RNA–Protein interactions for RNA: ENST00000581021.5

SS18-218, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-218ENST00000581021 CCDC196A0A1B0GTZ2 297 aa23.16■■□□□ 1.3
SS18-218ENST00000581021 ARHGAP1Q07960 439 aa23.16■■□□□ 1.3
SS18-218ENST00000581021 TTLL4Q14679 1199 aa23.16■■□□□ 1.3
SS18-218ENST00000581021 PFKFB3Q16875 520 aaPredicted RBP23.16■■□□□ 1.3
SS18-218ENST00000581021 OR6J1Q8NGC5 347 aa23.16■■□□□ 1.3
SS18-218ENST00000581021 SMARCC2Q8TAQ2 1214 aa23.16■■□□□ 1.3
SS18-218ENST00000581021 STARD7Q9NQZ5 370 aa23.16■■□□□ 1.3
SS18-218ENST00000581021 BARHL2Q9NY43 387 aa23.16■■□□□ 1.3
SS18-218ENST00000581021 NAPAP54920 295 aa23.15■■□□□ 1.3
SS18-218ENST00000581021 TLE2Q04725 743 aa23.15■■□□□ 1.3
SS18-218ENST00000581021 ZNF274Q96GC6 653 aaPredicted RBP23.15■■□□□ 1.3
SS18-218ENST00000581021 PRO3102Q9H379 93 aa23.15■■□□□ 1.3
SS18-218ENST00000581021 DDX41Q9UJV9 622 aaKnown RBP23.15■■□□□ 1.3
SS18-218ENST00000581021 TPCN1Q9ULQ1 816 aa23.15■■□□□ 1.3
SS18-218ENST00000581021 GRIN2DO15399 1336 aa23.14■■□□□ 1.3
SS18-218ENST00000581021 SCG2P13521 617 aa23.14■■□□□ 1.29
SS18-218ENST00000581021 IFNAR1P17181 557 aa23.14■■□□□ 1.29
SS18-218ENST00000581021 CCND2P30279 289 aa23.14■■□□□ 1.29
SS18-218ENST00000581021 STK3Q13188 491 aa23.14■■□□□ 1.29
SS18-218ENST00000581021 PPP1R18Q6NYC8 613 aa23.14■■□□□ 1.29
SS18-218ENST00000581021 CUL5Q93034 780 aa23.14■■□□□ 1.29
SS18-218ENST00000581021 COLQQ9Y215 455 aaPredicted RBP23.14■■□□□ 1.29
SS18-218ENST00000581021 ELP1O95163 1332 aa23.13■■□□□ 1.29
SS18-218ENST00000581021 NKRFO15226 690 aaKnown RBP eCLIP23.13■■□□□ 1.29
SS18-218ENST00000581021 PRPF3O43395 683 aaKnown RBP23.13■■□□□ 1.29
SS18-218ENST00000581021 AK2P54819 239 aa23.13■■□□□ 1.29
SS18-218ENST00000581021 SP2Q02086 613 aa23.13■■□□□ 1.29
SS18-218ENST00000581021 SEMA3FQ13275 785 aa23.13■■□□□ 1.29
SS18-218ENST00000581021 CHRDL2Q6WN34 429 aa23.13■■□□□ 1.29
SS18-218ENST00000581021 SH3RF1Q7Z6J0 888 aa23.13■■□□□ 1.29
SS18-218ENST00000581021 GLT1D1Q96MS3 346 aa23.13■■□□□ 1.29
SS18-218ENST00000581021 ALDH8A1Q9H2A2 487 aaPredicted RBP23.13■■□□□ 1.29
SS18-218ENST00000581021 RIC8AQ9NPQ8 531 aa23.13■■□□□ 1.29
SS18-218ENST00000581021 PDLIM7Q9NR12 457 aa23.13■■□□□ 1.29
SS18-218ENST00000581021 MRVI1Q9Y6F6 885 aa23.13■■□□□ 1.29
SS18-218ENST00000581021 A6NJR5 290 aa23.12■■□□□ 1.29
SS18-218ENST00000581021 PQBP1O60828 265 aaKnown RBP23.12■■□□□ 1.29
SS18-218ENST00000581021 DTNBO60941 627 aa23.12■■□□□ 1.29
SS18-218ENST00000581021 CDK7P50613 346 aa23.12■■□□□ 1.29
SS18-218ENST00000581021 PSMC6P62333 389 aa23.12■■□□□ 1.29
SS18-218ENST00000581021 AFG1LQ8WV93 481 aa23.12■■□□□ 1.29
SS18-218ENST00000581021 PGBD1Q96JS3 809 aa23.12■■□□□ 1.29
SS18-218ENST00000581021 INPP4AQ96PE3 977 aaPredicted RBP23.12■■□□□ 1.29
SS18-218ENST00000581021 SLC26A6Q9BXS9 759 aa23.12■■□□□ 1.29
SS18-218ENST00000581021 BCAS3Q9H6U6 928 aa23.12■■□□□ 1.29
SS18-218ENST00000581021 TMEM260Q9NX78 707 aa23.12■■□□□ 1.29
SS18-218ENST00000581021 LTBP2Q14767 1821 aa23.11■■□□□ 1.29
SS18-218ENST00000581021 hCG_1984214I3L0E3 225 aa23.11■■□□□ 1.29
SS18-218ENST00000581021 LARGE1O95461 756 aa23.11■■□□□ 1.29
SS18-218ENST00000581021 UBA1P22314 1058 aaKnown RBP23.11■■□□□ 1.29
SS18-218ENST00000581021 PURAQ00577 322 aaKnown RBP23.11■■□□□ 1.29
SS18-218ENST00000581021 PCNX4Q63HM2 1172 aa23.11■■□□□ 1.29
SS18-218ENST00000581021 ANKRD33Q7Z3H0 272 aa23.11■■□□□ 1.29
SS18-218ENST00000581021 ZNF713Q8N859 430 aaPredicted RBP23.11■■□□□ 1.29
SS18-218ENST00000581021 KIF2CQ99661 725 aa23.11■■□□□ 1.29
SS18-218ENST00000581021 RNF26Q9BY78 433 aaPredicted RBP23.11■■□□□ 1.29
SS18-218ENST00000581021 RTEL1Q9NZ71 1219 aa23.11■■□□□ 1.29
SS18-218ENST00000581021 PCDHA6Q9UN73 950 aa23.11■■□□□ 1.29
SS18-218ENST00000581021 PCDHA8Q9Y5H6 950 aa23.11■■□□□ 1.29
SS18-218ENST00000581021 TRIOBPQ9H2D6 2365 aa23.11■■□□□ 1.29
SS18-218ENST00000581021 A0A0U1RQG5 324 aaPredicted RBP23.1■■□□□ 1.29
SS18-218ENST00000581021 TRIM43BA6NCK2 446 aa23.1■■□□□ 1.29
SS18-218ENST00000581021 SMCO2A6NFE2 343 aa23.1■■□□□ 1.29
SS18-218ENST00000581021 SORBS3O60504 671 aa23.1■■□□□ 1.29
SS18-218ENST00000581021 GH1P01241 217 aa23.1■■□□□ 1.29
SS18-218ENST00000581021 MAGEA10P43363 369 aaPredicted RBP23.1■■□□□ 1.29
SS18-218ENST00000581021 CPT1AP50416 773 aa23.1■■□□□ 1.29
SS18-218ENST00000581021 ADCY7P51828 1080 aa23.1■■□□□ 1.29
SS18-218ENST00000581021 SCRN1Q12765 414 aa23.1■■□□□ 1.29
SS18-218ENST00000581021 SLC43A3Q8NBI5 491 aa23.1■■□□□ 1.29
SS18-218ENST00000581021 PPP1R13LQ8WUF5 828 aa23.1■■□□□ 1.29
SS18-218ENST00000581021 TRIM43Q96BQ3 446 aaPredicted RBP23.1■■□□□ 1.29
SS18-218ENST00000581021 ARVCFO00192 962 aa23.09■■□□□ 1.29
SS18-218ENST00000581021 EIF5BO60841 1220 aaKnown RBP23.09■■□□□ 1.29
SS18-218ENST00000581021 MMP3P08254 477 aa23.09■■□□□ 1.29
SS18-218ENST00000581021 MYL3P08590 195 aa23.09■■□□□ 1.29
SS18-218ENST00000581021 ITGB8P26012 769 aa23.09■■□□□ 1.29
SS18-218ENST00000581021 CLK2P49760 499 aaKnown RBP23.09■■□□□ 1.29
SS18-218ENST00000581021 FAAP100Q0VG06 881 aa23.09■■□□□ 1.29
SS18-218ENST00000581021 EMID1Q96A84 441 aaPredicted RBP23.09■■□□□ 1.29
SS18-218ENST00000581021 GDF15Q99988 308 aa23.09■■□□□ 1.29
SS18-218ENST00000581021 RBM27Q9P2N5 1060 aaKnown RBP23.09■■□□□ 1.29
SS18-218ENST00000581021 LAMA3Q16787 3333 aa23.09■■□□□ 1.29
SS18-218ENST00000581021 ZEB2O60315 1214 aa23.08■■□□□ 1.29
SS18-218ENST00000581021 PFKFB2O60825 505 aa23.08■■□□□ 1.29
SS18-218ENST00000581021 ITGB5P18084 799 aa23.08■■□□□ 1.29
SS18-218ENST00000581021 VTI1AQ96AJ9 217 aa23.08■■□□□ 1.29
SS18-218ENST00000581021 AIFM3Q96NN9 605 aa23.08■■□□□ 1.29
SS18-218ENST00000581021 PRDM5Q9NQX1 630 aaPredicted RBP23.08■■□□□ 1.29
SS18-218ENST00000581021 VPS54Q9P1Q0 977 aa23.08■■□□□ 1.29
SS18-218ENST00000581021 TELO2Q9Y4R8 837 aa23.08■■□□□ 1.29
SS18-218ENST00000581021 SCN10AQ9Y5Y9 1956 aa23.08■■□□□ 1.29
SS18-218ENST00000581021 ESYT2A0FGR8 921 aa23.07■■□□□ 1.28
SS18-218ENST00000581021 SPDYE3A6NKU9 549 aa23.07■■□□□ 1.28
SS18-218ENST00000581021 SPATA31C2B4DYI2 1134 aa23.07■■□□□ 1.28
SS18-218ENST00000581021 CABYRO75952 493 aa23.07■■□□□ 1.28
SS18-218ENST00000581021 GGPS1O95749 300 aa23.07■■□□□ 1.28
SS18-218ENST00000581021 ICAM3P32942 547 aa23.07■■□□□ 1.28
SS18-218ENST00000581021 NEK4P51957 841 aa23.07■■□□□ 1.28
SS18-218ENST00000581021 ITGA7Q13683 1181 aa23.07■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 207.5 ms