RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 PRDM6Q9NQX0 595 aa16.45■□□□□ 0.22
SNHG1-213ENST00000540725 PXMP2Q9NR77 195 aa16.45■□□□□ 0.22
SNHG1-213ENST00000540725 OPLAHO14841 1288 aa16.44■□□□□ 0.22
SNHG1-213ENST00000540725 NR3C2P08235 984 aa16.44■□□□□ 0.22
SNHG1-213ENST00000540725 IQCF3P0C7M6 154 aa16.44■□□□□ 0.22
SNHG1-213ENST00000540725 ACTN1P12814 892 aa16.44■□□□□ 0.22
SNHG1-213ENST00000540725 MYOGP15173 224 aa16.44■□□□□ 0.22
SNHG1-213ENST00000540725 IGFBP4P22692 258 aa16.44■□□□□ 0.22
SNHG1-213ENST00000540725 HSD17B4P51659 736 aa16.44■□□□□ 0.22
SNHG1-213ENST00000540725 GHRHRQ02643 423 aa16.44■□□□□ 0.22
SNHG1-213ENST00000540725 TRDNQ13061 729 aa16.44■□□□□ 0.22
SNHG1-213ENST00000540725 BFSP2Q13515 415 aa16.44■□□□□ 0.22
SNHG1-213ENST00000540725 PPP2R2DQ66LE6 453 aa16.44■□□□□ 0.22
SNHG1-213ENST00000540725 SYMPKQ92797 1274 aaKnown RBP16.44■□□□□ 0.22
SNHG1-213ENST00000540725 MTMR8Q96EF0 704 aa16.44■□□□□ 0.22
SNHG1-213ENST00000540725 MAD2L2Q9UI95 211 aa16.44■□□□□ 0.22
SNHG1-213ENST00000540725 REV3LO60673 3130 aa16.43■□□□□ 0.22
SNHG1-213ENST00000540725 ZBTB5O15062 677 aa16.43■□□□□ 0.22
SNHG1-213ENST00000540725 PPP1R11O60927 126 aaPredicted RBP16.43■□□□□ 0.22
SNHG1-213ENST00000540725 EIF3JO75822 258 aaKnown RBP16.43■□□□□ 0.22
SNHG1-213ENST00000540725 CASTP20810 708 aaKnown RBP16.43■□□□□ 0.22
SNHG1-213ENST00000540725 PTGISQ16647 500 aa16.43■□□□□ 0.22
SNHG1-213ENST00000540725 TJAP1Q5JTD0 557 aa16.43■□□□□ 0.22
SNHG1-213ENST00000540725 KAT2BQ92831 832 aa16.43■□□□□ 0.22
SNHG1-213ENST00000540725 DDX41Q9UJV9 622 aaKnown RBP16.43■□□□□ 0.22
SNHG1-213ENST00000540725 MRVI1Q9Y6F6 885 aa16.43■□□□□ 0.22
SNHG1-213ENST00000540725 PALM3A6NDB9 673 aaPredicted RBP16.42■□□□□ 0.22
SNHG1-213ENST00000540725 CYP21A2P08686 494 aa16.42■□□□□ 0.22
SNHG1-213ENST00000540725 DGKDQ16760 1214 aa16.42■□□□□ 0.22
SNHG1-213ENST00000540725 GDF6Q6KF10 455 aaPredicted RBP16.42■□□□□ 0.22
SNHG1-213ENST00000540725 SESTD1Q86VW0 696 aa16.42■□□□□ 0.22
SNHG1-213ENST00000540725 CCDC155Q8N6L0 562 aa16.42■□□□□ 0.22
SNHG1-213ENST00000540725 RUFY2Q8WXA3 655 aa16.42■□□□□ 0.22
SNHG1-213ENST00000540725 EMID1Q96A84 441 aaPredicted RBP16.42■□□□□ 0.22
SNHG1-213ENST00000540725 CTAGE1Q96RT6 745 aa16.42■□□□□ 0.22
SNHG1-213ENST00000540725 PDCD2LQ9BRP1 358 aa16.42■□□□□ 0.22
SNHG1-213ENST00000540725 FTOQ9C0B1 505 aaKnown RBP eCLIP16.42■□□□□ 0.22
SNHG1-213ENST00000540725 SUPT16HQ9Y5B9 1047 aaKnown RBP16.42■□□□□ 0.22
SNHG1-213ENST00000540725 PCDHA1Q9Y5I3 950 aa16.42■□□□□ 0.22
SNHG1-213ENST00000540725 U3KPZ7 1027 aaPredicted RBP16.42■□□□□ 0.22
SNHG1-213ENST00000540725 BRWD1Q9NSI6 2320 aa16.41■□□□□ 0.22
SNHG1-213ENST00000540725 DOCK5Q9H7D0 1870 aa16.41■□□□□ 0.22
SNHG1-213ENST00000540725 CHMLP26374 656 aa16.41■□□□□ 0.22
SNHG1-213ENST00000540725 PTH1RQ03431 593 aa16.41■□□□□ 0.22
SNHG1-213ENST00000540725 GRM4Q14833 912 aa16.41■□□□□ 0.22
SNHG1-213ENST00000540725 CCDC85BQ15834 202 aaPredicted RBP16.41■□□□□ 0.22
SNHG1-213ENST00000540725 SLC35G1Q2M3R5 365 aa16.41■□□□□ 0.22
SNHG1-213ENST00000540725 TMEM67Q5HYA8 995 aa16.41■□□□□ 0.22
SNHG1-213ENST00000540725 HOMER1Q86YM7 354 aa16.41■□□□□ 0.22
SNHG1-213ENST00000540725 CAGE1Q8TC20 777 aa16.41■□□□□ 0.22
SNHG1-213ENST00000540725 SLC9A7Q96T83 725 aa16.41■□□□□ 0.22
SNHG1-213ENST00000540725 MAP3K20Q9NYL2 800 aaKnown RBP16.41■□□□□ 0.22
SNHG1-213ENST00000540725 MUC3AQ02505 3323 aa16.41■□□□□ 0.22
SNHG1-213ENST00000540725 IFIT3O14879 490 aaKnown RBP16.4■□□□□ 0.22
SNHG1-213ENST00000540725 MYCLP12524 364 aaPredicted RBP16.4■□□□□ 0.22
SNHG1-213ENST00000540725 HOXA13P31271 388 aaPredicted RBP16.4■□□□□ 0.22
SNHG1-213ENST00000540725 PSEN2P49810 448 aa16.4■□□□□ 0.22
SNHG1-213ENST00000540725 LAMC2Q13753 1193 aa16.4■□□□□ 0.22
SNHG1-213ENST00000540725 STOX1Q6ZVD7 989 aa16.4■□□□□ 0.22
SNHG1-213ENST00000540725 DHX37Q8IY37 1157 aaKnown RBP16.4■□□□□ 0.22
SNHG1-213ENST00000540725 SAMD3Q8N6K7 520 aa16.4■□□□□ 0.22
SNHG1-213ENST00000540725 PPTC7Q8NI37 304 aa16.4■□□□□ 0.22
SNHG1-213ENST00000540725 AFAP1L1Q8TED9 768 aa16.4■□□□□ 0.22
SNHG1-213ENST00000540725 DHX38Q92620 1227 aaKnown RBP16.4■□□□□ 0.22
SNHG1-213ENST00000540725 PIGSQ96S52 555 aa16.4■□□□□ 0.22
SNHG1-213ENST00000540725 SENP2Q9HC62 589 aa16.4■□□□□ 0.22
SNHG1-213ENST00000540725 THEGQ9P2T0 379 aa16.4■□□□□ 0.22
SNHG1-213ENST00000540725 ERICH2A1L162 156 aa16.39■□□□□ 0.21
SNHG1-213ENST00000540725 RGS20O76081 388 aa16.39■□□□□ 0.21
SNHG1-213ENST00000540725 CA3P07451 260 aa16.39■□□□□ 0.21
SNHG1-213ENST00000540725 ZNF286BP0CG31 522 aa16.39■□□□□ 0.21
SNHG1-213ENST00000540725 TRAF1Q13077 416 aa16.39■□□□□ 0.21
SNHG1-213ENST00000540725 RALYLQ86SE5 291 aaKnown RBP16.39■□□□□ 0.21
SNHG1-213ENST00000540725 C7orf31Q8N865 590 aa16.39■□□□□ 0.21
SNHG1-213ENST00000540725 IL31RAQ8NI17 732 aa16.39■□□□□ 0.21
SNHG1-213ENST00000540725 PHOSPHO2Q8TCD6 241 aa16.39■□□□□ 0.21
SNHG1-213ENST00000540725 ALG1Q9BT22 464 aa16.39■□□□□ 0.21
SNHG1-213ENST00000540725 KATNAL1Q9BW62 490 aa16.39■□□□□ 0.21
SNHG1-213ENST00000540725 RIOX1Q9H6W3 641 aa16.39■□□□□ 0.21
SNHG1-213ENST00000540725 HDAC6Q9UBN7 1215 aa16.39■□□□□ 0.21
SNHG1-213ENST00000540725 GTF2IRD1Q9UHL9 959 aa16.39■□□□□ 0.21
SNHG1-213ENST00000540725 TAF6LQ9Y6J9 622 aa16.39■□□□□ 0.21
SNHG1-213ENST00000540725 TCF20Q9UGU0 1960 aaKnown RBP16.39■□□□□ 0.21
SNHG1-213ENST00000540725 E7EWF7 191 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 BAIAP3O94812 1187 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 F2P00734 622 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 SELPP16109 830 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 RBL2Q08999 1139 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 MFSD10Q14728 455 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 WTAPQ15007 396 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 SART3Q15020 963 aaKnown RBP16.38■□□□□ 0.21
SNHG1-213ENST00000540725 PGM5Q15124 567 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 KIAA0753Q2KHM9 967 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 KCNV1Q6PIU1 500 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 LRRC8DQ7L1W4 858 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 VSIG10LQ86VR7 867 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 HERC6Q8IVU3 1022 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 NCOA7Q8NI08 942 aa16.38■□□□□ 0.21
SNHG1-213ENST00000540725 ATXN2LQ8WWM7 1075 aaKnown RBP16.38■□□□□ 0.21
SNHG1-213ENST00000540725 KAT6AQ92794 2004 aa16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 59.6 ms