RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 SCGB1D2O95969 90 aa9.91□□□□□ -0.82
NUP54-215ENST00000514313 CEBPAP49715 358 aaPredicted RBP9.91□□□□□ -0.82
NUP54-215ENST00000514313 RAB27AP51159 221 aa9.91□□□□□ -0.82
NUP54-215ENST00000514313 RPL11P62913 178 aaKnown RBP9.91□□□□□ -0.82
NUP54-215ENST00000514313 ATP13A4Q4VNC1 1196 aa9.91□□□□□ -0.82
NUP54-215ENST00000514313 SYDE2Q5VT97 1194 aa9.91□□□□□ -0.82
NUP54-215ENST00000514313 CREB3L3Q68CJ9 461 aa9.91□□□□□ -0.82
NUP54-215ENST00000514313 C16orf59Q7L2K0 433 aa9.91□□□□□ -0.82
NUP54-215ENST00000514313 WDR75Q8IWA0 830 aaKnown RBP9.91□□□□□ -0.82
NUP54-215ENST00000514313 NETO1Q8TDF5 533 aa9.91□□□□□ -0.82
NUP54-215ENST00000514313 FCRL2Q96LA5 508 aaPredicted RBP9.91□□□□□ -0.82
NUP54-215ENST00000514313 GABBR1Q9UBS5 961 aa9.91□□□□□ -0.82
NUP54-215ENST00000514313 IQSEC1Q6DN90 963 aa9.9□□□□□ -0.82
NUP54-215ENST00000514313 DPF3Q92784 378 aa9.9□□□□□ -0.82
NUP54-215ENST00000514313 KCNJ15Q99712 375 aa9.9□□□□□ -0.82
NUP54-215ENST00000514313 CLDND1Q9NY35 253 aa9.9□□□□□ -0.82
NUP54-215ENST00000514313 H2AFY2Q9P0M6 372 aaPredicted RBP9.9□□□□□ -0.82
NUP54-215ENST00000514313 SNX11Q9Y5W9 270 aa9.9□□□□□ -0.82
NUP54-215ENST00000514313 TMEM265A0A087WTH1 108 aa9.89□□□□□ -0.83
NUP54-215ENST00000514313 GSTA4O15217 222 aa9.89□□□□□ -0.83
NUP54-215ENST00000514313 CYP26A1O43174 497 aa9.89□□□□□ -0.83
NUP54-215ENST00000514313 AKAP10O43572 662 aa9.89□□□□□ -0.83
NUP54-215ENST00000514313 NPHS1O60500 1241 aa9.89□□□□□ -0.83
NUP54-215ENST00000514313 YBX3P16989 372 aaKnown RBP eCLIP9.89□□□□□ -0.834e-11■■■■■ 30.1
NUP54-215ENST00000514313 FSTP19883 344 aa9.89□□□□□ -0.83
NUP54-215ENST00000514313 GTF2A2P52657 109 aa9.89□□□□□ -0.83
NUP54-215ENST00000514313 TBX4P57082 545 aa9.89□□□□□ -0.83
NUP54-215ENST00000514313 ZBTB46Q86UZ6 589 aa9.89□□□□□ -0.83
NUP54-215ENST00000514313 C2orf69Q8N8R5 385 aa9.89□□□□□ -0.83
NUP54-215ENST00000514313 CHMP4CQ96CF2 233 aa9.89□□□□□ -0.83
NUP54-215ENST00000514313 HOOK2Q96ED9 719 aa9.89□□□□□ -0.83
NUP54-215ENST00000514313 C8orf48Q96LL4 319 aa9.89□□□□□ -0.83
NUP54-215ENST00000514313 CATSPERZQ9NTU4 200 aa9.89□□□□□ -0.83
NUP54-215ENST00000514313 BTG4Q9NY30 223 aa9.89□□□□□ -0.83
NUP54-215ENST00000514313 ZIM2Q9NZV7 527 aa9.89□□□□□ -0.83
NUP54-215ENST00000514313 ZNF281Q9Y2X9 895 aa9.89□□□□□ -0.83
NUP54-215ENST00000514313 GSC2O15499 205 aa9.88□□□□□ -0.83
NUP54-215ENST00000514313 KPNA1P52294 538 aaPredicted RBP9.88□□□□□ -0.83
NUP54-215ENST00000514313 PIN1Q13526 163 aaPredicted RBP9.88□□□□□ -0.83
NUP54-215ENST00000514313 HDGFL2Q7Z4V5 671 aaPredicted RBP9.88□□□□□ -0.83
NUP54-215ENST00000514313 JAM3Q9BX67 310 aa9.88□□□□□ -0.83
NUP54-215ENST00000514313 VTA1Q9NP79 307 aa9.88□□□□□ -0.83
NUP54-215ENST00000514313 ZC3H7BQ9UGR2 993 aaKnown RBP9.88□□□□□ -0.83
NUP54-215ENST00000514313 TNKSO95271 1327 aa9.87□□□□□ -0.83
NUP54-215ENST00000514313 CCDC194A0A1B0GVG4 234 aa9.87□□□□□ -0.83
NUP54-215ENST00000514313 FAM181BA6NEQ2 426 aa9.87□□□□□ -0.83
NUP54-215ENST00000514313 FPR2P25090 351 aa9.87□□□□□ -0.83
NUP54-215ENST00000514313 OCRLQ01968 901 aa9.87□□□□□ -0.83
NUP54-215ENST00000514313 CRY1Q16526 586 aa9.87□□□□□ -0.83
NUP54-215ENST00000514313 ABCB5Q2M3G0 1257 aa9.87□□□□□ -0.83
NUP54-215ENST00000514313 OTOP1Q7RTM1 612 aa9.87□□□□□ -0.83
NUP54-215ENST00000514313 C11orf74Q86VG3 221 aa9.87□□□□□ -0.83
NUP54-215ENST00000514313 PANK1Q8TE04 598 aa9.87□□□□□ -0.83
NUP54-215ENST00000514313 AASDHPPTQ9NRN7 309 aa9.87□□□□□ -0.83
NUP54-215ENST00000514313 OXSMQ9NWU1 459 aa9.87□□□□□ -0.83
NUP54-215ENST00000514313 H7BY64 318 aa9.86□□□□□ -0.83
NUP54-215ENST00000514313 ZNF561-AS1K7EIQ3 104 aa9.86□□□□□ -0.83
NUP54-215ENST00000514313 ULK1O75385 1050 aa9.86□□□□□ -0.83
NUP54-215ENST00000514313 PDE6AP16499 860 aa9.86□□□□□ -0.83
NUP54-215ENST00000514313 HLA-DQA1Q5Y7H0 255 aa9.86□□□□□ -0.83
NUP54-215ENST00000514313 ZDHHC13Q8IUH4 622 aa9.86□□□□□ -0.83
NUP54-215ENST00000514313 TEX2Q8IWB9 1127 aa9.86□□□□□ -0.83
NUP54-215ENST00000514313 Q8N1Y9 231 aa9.86□□□□□ -0.83
NUP54-215ENST00000514313 CBARPQ8N350 705 aaPredicted RBP9.86□□□□□ -0.83
NUP54-215ENST00000514313 TMEM169Q96HH4 297 aa9.86□□□□□ -0.83
NUP54-215ENST00000514313 CCDC136Q96JN2 1154 aa9.86□□□□□ -0.83
NUP54-215ENST00000514313 RTFDC1Q9BY42 306 aaPredicted RBP9.86□□□□□ -0.83
NUP54-215ENST00000514313 CDH19Q9H159 772 aa9.86□□□□□ -0.83
NUP54-215ENST00000514313 SMURF1Q9HCE7 757 aa9.86□□□□□ -0.83
NUP54-215ENST00000514313 PIM2Q9P1W9 311 aa9.86□□□□□ -0.83
NUP54-215ENST00000514313 GULP1Q9UBP9 304 aa9.86□□□□□ -0.83
NUP54-215ENST00000514313 K7ESF4 209 aa9.85□□□□□ -0.83
NUP54-215ENST00000514313 KRT37O76014 449 aa9.85□□□□□ -0.83
NUP54-215ENST00000514313 FBXO21O94952 628 aa9.85□□□□□ -0.83
NUP54-215ENST00000514313 ITGB2P05107 769 aa9.85□□□□□ -0.83
NUP54-215ENST00000514313 JAM2P57087 298 aa9.85□□□□□ -0.83
NUP54-215ENST00000514313 ERVK-21P61565 698 aa9.85□□□□□ -0.83
NUP54-215ENST00000514313 LACTBP83111 547 aaPredicted RBP9.85□□□□□ -0.83
NUP54-215ENST00000514313 ARHGAP44Q17R89 818 aa9.85□□□□□ -0.83
NUP54-215ENST00000514313 CEP68Q76N32 757 aa9.85□□□□□ -0.83
NUP54-215ENST00000514313 CLRN3Q8NCR9 226 aa9.85□□□□□ -0.83
NUP54-215ENST00000514313 HRASLS5Q96KN8 279 aa9.85□□□□□ -0.83
NUP54-215ENST00000514313 MENTQ9BUN1 341 aa9.85□□□□□ -0.83
NUP54-215ENST00000514313 MARCH2Q9P0N8 246 aa9.85□□□□□ -0.83
NUP54-215ENST00000514313 WTIPA6NIX2 430 aaPredicted RBP9.84□□□□□ -0.83
NUP54-215ENST00000514313 PRC1O43663 620 aa9.84□□□□□ -0.83
NUP54-215ENST00000514313 AMY2AP04746 511 aa9.84□□□□□ -0.83
NUP54-215ENST00000514313 GNAT1P11488 350 aa9.84□□□□□ -0.83
NUP54-215ENST00000514313 KRT15P19012 456 aa9.84□□□□□ -0.83
NUP54-215ENST00000514313 AMY2BP19961 511 aa9.84□□□□□ -0.83
NUP54-215ENST00000514313 IARSP41252 1262 aaKnown RBP9.84□□□□□ -0.83
NUP54-215ENST00000514313 FSTL4Q6MZW2 842 aa9.84□□□□□ -0.83
NUP54-215ENST00000514313 OSTM1Q86WC4 334 aa9.84□□□□□ -0.83
NUP54-215ENST00000514313 PASD1Q8IV76 773 aa9.84□□□□□ -0.83
NUP54-215ENST00000514313 CCDC146Q8IYE0 955 aa9.84□□□□□ -0.83
NUP54-215ENST00000514313 EFHBQ8N7U6 833 aa9.84□□□□□ -0.83
NUP54-215ENST00000514313 SLC5A5Q92911 643 aa9.84□□□□□ -0.83
NUP54-215ENST00000514313 MAP6Q96JE9 813 aa9.84□□□□□ -0.83
NUP54-215ENST00000514313 G6PC3Q9BUM1 346 aa9.84□□□□□ -0.83
NUP54-215ENST00000514313 BOCQ9BWV1 1114 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms