RNA–Protein interactions for RNA: ENST00000510569.5

NUP54-209, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 494 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-209ENST00000510569 MICAL1Q8TDZ2 1067 aa8.35□□□□□ -1.07
NUP54-209ENST00000510569 DIO2Q92813 273 aa8.35□□□□□ -1.07
NUP54-209ENST00000510569 CCDC140Q96MF4 163 aa8.35□□□□□ -1.07
NUP54-209ENST00000510569 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.35□□□□□ -1.07
NUP54-209ENST00000510569 PCDH18Q9HCL0 1135 aa8.35□□□□□ -1.07
NUP54-209ENST00000510569 NTMQ9P121 344 aa8.35□□□□□ -1.07
NUP54-209ENST00000510569 TMEFF2Q9UIK5 374 aaPredicted RBP8.35□□□□□ -1.07
NUP54-209ENST00000510569 MEFVO15553 781 aaPredicted RBP8.34□□□□□ -1.07
NUP54-209ENST00000510569 SNRPB2P08579 225 aaKnown RBP8.34□□□□□ -1.07
NUP54-209ENST00000510569 GTF2A2P52657 109 aa8.34□□□□□ -1.07
NUP54-209ENST00000510569 GFRA1P56159 465 aa8.34□□□□□ -1.07
NUP54-209ENST00000510569 NT5DC1Q5TFE4 455 aa8.34□□□□□ -1.07
NUP54-209ENST00000510569 ZBTB8AQ96BR9 441 aa8.34□□□□□ -1.07
NUP54-209ENST00000510569 DDX11Q96FC9 970 aa8.34□□□□□ -1.07
NUP54-209ENST00000510569 GORASP1Q9BQQ3 440 aa8.34□□□□□ -1.07
NUP54-209ENST00000510569 EPN3Q9H201 632 aa8.34□□□□□ -1.07
NUP54-209ENST00000510569 ZNF408Q9H9D4 720 aa8.34□□□□□ -1.07
NUP54-209ENST00000510569 BTG4Q9NY30 223 aa8.34□□□□□ -1.07
NUP54-209ENST00000510569 PRICKLE3O43900 615 aaPredicted RBP8.33□□□□□ -1.08
NUP54-209ENST00000510569 NOBOXO60393 691 aa8.33□□□□□ -1.08
NUP54-209ENST00000510569 DDAH1O94760 285 aa8.33□□□□□ -1.08
NUP54-209ENST00000510569 KRTAP10-2P60368 255 aa8.33□□□□□ -1.08
NUP54-209ENST00000510569 RTP5Q14D33 572 aa8.33□□□□□ -1.08
NUP54-209ENST00000510569 USP40Q9NVE5 1235 aa8.33□□□□□ -1.08
NUP54-209ENST00000510569 LRP2BPQ9P2M1 347 aa8.33□□□□□ -1.08
NUP54-209ENST00000510569 MYO1BO43795 1136 aa8.32□□□□□ -1.08
NUP54-209ENST00000510569 ECI1P42126 302 aa8.32□□□□□ -1.08
NUP54-209ENST00000510569 SARSP49591 514 aaKnown RBP8.32□□□□□ -1.08
NUP54-209ENST00000510569 SF1Q15637 639 aaKnown RBP8.32□□□□□ -1.08
NUP54-209ENST00000510569 SLC10A6Q3KNW5 377 aa8.32□□□□□ -1.08
NUP54-209ENST00000510569 MCF2L2Q86YR7 1114 aa8.32□□□□□ -1.08
NUP54-209ENST00000510569 FAM126BQ8IXS8 530 aa8.32□□□□□ -1.08
NUP54-209ENST00000510569 C1orf159Q96HA4 380 aa8.32□□□□□ -1.08
NUP54-209ENST00000510569 C11orf84Q9BUA3 381 aaPredicted RBP8.32□□□□□ -1.08
NUP54-209ENST00000510569 FBXL7Q9UJT9 491 aa8.32□□□□□ -1.08
NUP54-209ENST00000510569 PALD1Q9ULE6 856 aa8.32□□□□□ -1.08
NUP54-209ENST00000510569 GJB6O95452 261 aa8.31□□□□□ -1.08
NUP54-209ENST00000510569 THBS2P35442 1172 aa8.31□□□□□ -1.08
NUP54-209ENST00000510569 LTBRP36941 435 aa8.31□□□□□ -1.08
NUP54-209ENST00000510569 BCL6P41182 706 aa8.31□□□□□ -1.08
NUP54-209ENST00000510569 ARID5AQ03989 594 aa8.31□□□□□ -1.08
NUP54-209ENST00000510569 EFEMP1Q12805 493 aa8.31□□□□□ -1.08
NUP54-209ENST00000510569 PRSS53Q2L4Q9 553 aa8.31□□□□□ -1.08
NUP54-209ENST00000510569 DENND5AQ6IQ26 1287 aa8.31□□□□□ -1.08
NUP54-209ENST00000510569 TTLL7Q6ZT98 887 aa8.31□□□□□ -1.08
NUP54-209ENST00000510569 ZNF761Q86XN6 746 aaPredicted RBP8.31□□□□□ -1.08
NUP54-209ENST00000510569 PPIL6Q8IXY8 311 aa8.31□□□□□ -1.08
NUP54-209ENST00000510569 RCBTB1Q8NDN9 531 aa8.31□□□□□ -1.08
NUP54-209ENST00000510569 BDH2Q9BUT1 245 aa8.31□□□□□ -1.08
NUP54-209ENST00000510569 LNPKQ9C0E8 428 aa8.31□□□□□ -1.08
NUP54-209ENST00000510569 CNOT11Q9UKZ1 510 aaKnown RBP8.31□□□□□ -1.08
NUP54-209ENST00000510569 ZNF652Q9Y2D9 606 aa8.31□□□□□ -1.08
NUP54-209ENST00000510569 GJA9P57773 515 aa8.3□□□□□ -1.08
NUP54-209ENST00000510569 SMAD4Q13485 552 aaKnown RBP8.3□□□□□ -1.08
NUP54-209ENST00000510569 SLC35F1Q5T1Q4 408 aa8.3□□□□□ -1.08
NUP54-209ENST00000510569 CEP68Q76N32 757 aa8.3□□□□□ -1.08
NUP54-209ENST00000510569 EEPD1Q7L9B9 569 aa8.3□□□□□ -1.08
NUP54-209ENST00000510569 PRRT2Q7Z6L0 340 aaPredicted RBP8.3□□□□□ -1.08
NUP54-209ENST00000510569 ZC3H18Q86VM9 953 aaKnown RBP8.3□□□□□ -1.08
NUP54-209ENST00000510569 FAM26EQ8N5C1 309 aa8.3□□□□□ -1.08
NUP54-209ENST00000510569 KYQ8NBH2 561 aa8.3□□□□□ -1.08
NUP54-209ENST00000510569 TMEM145Q8NBT3 493 aa8.3□□□□□ -1.08
NUP54-209ENST00000510569 TRMT2BQ96GJ1 504 aaKnown RBP8.3□□□□□ -1.08
NUP54-209ENST00000510569 TMEM169Q96HH4 297 aa8.3□□□□□ -1.08
NUP54-209ENST00000510569 CCDC9Q9Y3X0 531 aaKnown RBP8.3□□□□□ -1.08
NUP54-209ENST00000510569 H7BY64 318 aa8.29□□□□□ -1.08
NUP54-209ENST00000510569 SMARCA5O60264 1052 aaPredicted RBP8.29□□□□□ -1.08
NUP54-209ENST00000510569 RPL13P26373 211 aaKnown RBP8.29□□□□□ -1.08
NUP54-209ENST00000510569 NFKB2Q00653 900 aa8.29□□□□□ -1.08
NUP54-209ENST00000510569 MILR1Q7Z6M3 343 aa8.29□□□□□ -1.08
NUP54-209ENST00000510569 NPFFR2Q9Y5X5 522 aa8.29□□□□□ -1.08
NUP54-209ENST00000510569 KCNJ6P48051 423 aa8.28□□□□□ -1.08
NUP54-209ENST00000510569 ITGA1P56199 1179 aa8.28□□□□□ -1.08
NUP54-209ENST00000510569 EMC4Q5J8M3 183 aa8.28□□□□□ -1.08
NUP54-209ENST00000510569 UBXN11Q5T124 520 aa8.28□□□□□ -1.08
NUP54-209ENST00000510569 ADAMTS17Q8TE56 1095 aa8.28□□□□□ -1.08
NUP54-209ENST00000510569 SYT3Q9BQG1 590 aa8.28□□□□□ -1.08
NUP54-209ENST00000510569 NGRNQ9NPE2 291 aaKnown RBP8.28□□□□□ -1.08
NUP54-209ENST00000510569 COA3Q9Y2R0 106 aaPredicted RBP8.28□□□□□ -1.08
NUP54-209ENST00000510569 DUSP10Q9Y6W6 482 aa8.28□□□□□ -1.08
NUP54-209ENST00000510569 LCP1P13796 627 aa8.27□□□□□ -1.09
NUP54-209ENST00000510569 PLP2Q04941 152 aa8.27□□□□□ -1.09
NUP54-209ENST00000510569 MAP4K2Q12851 820 aa8.27□□□□□ -1.09
NUP54-209ENST00000510569 LSAMPQ13449 338 aa8.27□□□□□ -1.09
NUP54-209ENST00000510569 CHRNA2Q15822 529 aa8.27□□□□□ -1.09
NUP54-209ENST00000510569 PRR31Q5SQ13 230 aa8.27□□□□□ -1.09
NUP54-209ENST00000510569 CD300LDQ6UXZ3 194 aa8.27□□□□□ -1.09
NUP54-209ENST00000510569 TTLL6Q8N841 843 aa8.27□□□□□ -1.09
NUP54-209ENST00000510569 SLC43A3Q8NBI5 491 aa8.27□□□□□ -1.09
NUP54-209ENST00000510569 GMLQ99445 158 aa8.27□□□□□ -1.09
NUP54-209ENST00000510569 AGRPO00253 132 aa8.26□□□□□ -1.09
NUP54-209ENST00000510569 CNR2P34972 360 aa8.26□□□□□ -1.09
NUP54-209ENST00000510569 PPP2R2AP63151 447 aa8.26□□□□□ -1.09
NUP54-209ENST00000510569 CR1LQ2VPA4 569 aa8.26□□□□□ -1.09
NUP54-209ENST00000510569 SPATS1Q496A3 300 aa8.26□□□□□ -1.09
NUP54-209ENST00000510569 FAM26FQ5R3K3 315 aa8.26□□□□□ -1.09
NUP54-209ENST00000510569 FERMT3Q86UX7 667 aa8.26□□□□□ -1.09
NUP54-209ENST00000510569 HNRNPLLQ8WVV9 542 aaKnown RBP8.26□□□□□ -1.09
NUP54-209ENST00000510569 KRTAP4-5Q9BYR2 181 aa8.26□□□□□ -1.09
NUP54-209ENST00000510569 PCDHA2Q9Y5H9 948 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms