RNA–Protein interactions for RNA: ENST00000487245.5

HLA-C-208, Transcript of major histocompatibility complex, class I, C, human

Gene HLA-C, Length 1,880 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HLA-C-208	ENST00000487245	DDX25	Q9UHL0	483 aa	Known RBP	29.08	■■■□□ 2.25
HLA-C-208	ENST00000487245	CYLC1	P35663	651 aa	Predicted RBP	29.08	■■■□□ 2.25
HLA-C-208	ENST00000487245	TMEM119	Q4V9L6	283 aa		29.08	■■■□□ 2.25
HLA-C-208	ENST00000487245	MCTP2	Q6DN12	878 aa		29.08	■■■□□ 2.25
HLA-C-208	ENST00000487245	KCTD1	Q719H9	257 aa		29.08	■■■□□ 2.25
HLA-C-208	ENST00000487245	TRAPPC11	Q7Z392	1133 aa		29.08	■■■□□ 2.25
HLA-C-208	ENST00000487245	ZSWIM4	Q9H7M6	989 aa		29.08	■■■□□ 2.25
HLA-C-208	ENST00000487245	ABCB11	O95342	1321 aa		29.07	■■■□□ 2.24
HLA-C-208	ENST00000487245	RASSF10	A6NK89	507 aa		29.07	■■■□□ 2.24
HLA-C-208	ENST00000487245	FGFR1OP	O95684	399 aa	Known RBP	29.07	■■■□□ 2.24
HLA-C-208	ENST00000487245	PSMD2	Q13200	908 aa		29.07	■■■□□ 2.24
HLA-C-208	ENST00000487245	UBE2S	Q16763	222 aa		29.07	■■■□□ 2.24
HLA-C-208	ENST00000487245	BEND6	Q5SZJ8	279 aa	Predicted RBP	29.07	■■■□□ 2.24
HLA-C-208	ENST00000487245	CENPP	Q6IPU0	288 aa		29.07	■■■□□ 2.24
HLA-C-208	ENST00000487245	ZFPM1	Q8IX07	1006 aa		29.07	■■■□□ 2.24
HLA-C-208	ENST00000487245	SNX29	Q8TEQ0	813 aa		29.07	■■■□□ 2.24
HLA-C-208	ENST00000487245	SERPINA10	Q9UK55	444 aa		29.07	■■■□□ 2.24
HLA-C-208	ENST00000487245	ATF5	Q9Y2D1	282 aa	Predicted RBP	29.07	■■■□□ 2.24
HLA-C-208	ENST00000487245	EIF3CL	B5ME19	914 aa	Known RBP	29.06	■■■□□ 2.24
HLA-C-208	ENST00000487245	SLC16A2	P36021	539 aa		29.06	■■■□□ 2.24
HLA-C-208	ENST00000487245	TBC1D8B	Q0IIM8	1120 aa		29.06	■■■□□ 2.24
HLA-C-208	ENST00000487245	MCM6	Q14566	821 aa		29.06	■■■□□ 2.24
HLA-C-208	ENST00000487245	SEPT2	Q15019	361 aa		29.06	■■■□□ 2.24
HLA-C-208	ENST00000487245	MIIP	Q5JXC2	388 aa		29.06	■■■□□ 2.24
HLA-C-208	ENST00000487245	FOXR2	Q6PJQ5	311 aa		29.06	■■■□□ 2.24
HLA-C-208	ENST00000487245	KIAA0825	Q8IV33	1275 aa		29.06	■■■□□ 2.24
HLA-C-208	ENST00000487245	EIF3C	Q99613	913 aa	Known RBP	29.06	■■■□□ 2.24
HLA-C-208	ENST00000487245	GBP3	Q9H0R5	595 aa		29.06	■■■□□ 2.24
HLA-C-208	ENST00000487245	DNAJC18	Q9H819	358 aa		29.06	■■■□□ 2.24
HLA-C-208	ENST00000487245	ZNHIT6	Q9NWK9	470 aa	Known RBP	29.06	■■■□□ 2.24
HLA-C-208	ENST00000487245	MYMK	A6NI61	221 aa		29.06	■■■□□ 2.24
HLA-C-208	ENST00000487245	PES1	O00541	588 aa	Known RBP	29.06	■■■□□ 2.24
HLA-C-208	ENST00000487245	ECE2	O60344	883 aa		29.06	■■■□□ 2.24
HLA-C-208	ENST00000487245	OAS2	P29728	719 aa	Known RBP	29.06	■■■□□ 2.24
HLA-C-208	ENST00000487245	TATDN1	Q6P1N9	297 aa		29.06	■■■□□ 2.24
HLA-C-208	ENST00000487245	PNKP	Q96T60	521 aa		29.06	■■■□□ 2.24
HLA-C-208	ENST00000487245	FAM198A	Q9UFP1	575 aa		29.06	■■■□□ 2.24
HLA-C-208	ENST00000487245	MARCH6	O60337	910 aa		29.05	■■■□□ 2.24
HLA-C-208	ENST00000487245	FCER1A	P12319	257 aa		29.05	■■■□□ 2.24
HLA-C-208	ENST00000487245	EEF2	P13639	858 aa	Known RBP	29.05	■■■□□ 2.24
HLA-C-208	ENST00000487245	SLC1A4	P43007	532 aa		29.05	■■■□□ 2.24
HLA-C-208	ENST00000487245	RBM5	P52756	815 aa	Known RBP eCLIP	29.05	■■■□□ 2.24
HLA-C-208	ENST00000487245	PAPD7	Q5XG87	772 aa	Known RBP	29.05	■■■□□ 2.24
HLA-C-208	ENST00000487245	SLFN13	Q68D06	897 aa		29.05	■■■□□ 2.24
HLA-C-208	ENST00000487245	ZNF772	Q68DY9	489 aa	Predicted RBP	29.05	■■■□□ 2.24
HLA-C-208	ENST00000487245	ZKSCAN7	Q9P0L1	754 aa	Predicted RBP	29.05	■■■□□ 2.24
HLA-C-208	ENST00000487245	MTIF2	P46199	727 aa	Known RBP	29.04	■■■□□ 2.24
HLA-C-208	ENST00000487245	USP11	P51784	963 aa		29.04	■■■□□ 2.24
HLA-C-208	ENST00000487245	TMEM179	Q6ZVK1	233 aa		29.04	■■■□□ 2.24
HLA-C-208	ENST00000487245	GUF1	Q8N442	669 aa	Known RBP	29.04	■■■□□ 2.24
HLA-C-208	ENST00000487245	KIAA0895	Q8NCT3	520 aa		29.04	■■■□□ 2.24
HLA-C-208	ENST00000487245	KCNQ5	Q9NR82	932 aa		29.04	■■■□□ 2.24
HLA-C-208	ENST00000487245	GUCA1B	Q9UMX6	200 aa		29.04	■■■□□ 2.24
HLA-C-208	ENST00000487245	CCDC66	A2RUB6	948 aa		29.04	■■■□□ 2.24
HLA-C-208	ENST00000487245	HDX	Q7Z353	690 aa		29.04	■■■□□ 2.24
HLA-C-208	ENST00000487245	CNKSR1	Q969H4	720 aa		29.04	■■■□□ 2.24
HLA-C-208	ENST00000487245	KDM3A	Q9Y4C1	1321 aa		29.03	■■■□□ 2.24
HLA-C-208	ENST00000487245	DDTL	A6NHG4	134 aa	Predicted RBP	29.03	■■■□□ 2.24
HLA-C-208	ENST00000487245	TRIM21	P19474	475 aa	Known RBP	29.03	■■■□□ 2.24
HLA-C-208	ENST00000487245	HNRNPH3	P31942	346 aa	Known RBP	29.03	■■■□□ 2.24
HLA-C-208	ENST00000487245	QRICH1	Q2TAL8	776 aa		29.03	■■■□□ 2.24
HLA-C-208	ENST00000487245	HYI	Q5T013	277 aa		29.03	■■■□□ 2.24
HLA-C-208	ENST00000487245	NOC4L	Q9BVI4	516 aa	Known RBP	29.03	■■■□□ 2.24
HLA-C-208	ENST00000487245	NT5C3A	Q9H0P0	336 aa		29.03	■■■□□ 2.24
HLA-C-208	ENST00000487245	SIPA1L1	O43166	1804 aa		29.03	■■■□□ 2.24
HLA-C-208	ENST00000487245	POTEM	A6NI47	508 aa		29.02	■■■□□ 2.24
HLA-C-208	ENST00000487245	KRT86	O43790	486 aa		29.02	■■■□□ 2.24
HLA-C-208	ENST00000487245	TCP10	Q12799	353 aa		29.02	■■■□□ 2.24
HLA-C-208	ENST00000487245	CCDC122	Q5T0U0	273 aa		29.02	■■■□□ 2.24
HLA-C-208	ENST00000487245	FKBP15	Q5T1M5	1219 aa		29.02	■■■□□ 2.24
HLA-C-208	ENST00000487245	WDR93	Q6P2C0	686 aa		29.02	■■■□□ 2.24
HLA-C-208	ENST00000487245	HAS1	Q92839	578 aa		29.02	■■■□□ 2.24
HLA-C-208	ENST00000487245	SEMA6B	Q9H3T3	888 aa		29.02	■■■□□ 2.24
HLA-C-208	ENST00000487245	PCDHA12	Q9UN75	941 aa		29.02	■■■□□ 2.24
HLA-C-208	ENST00000487245	L1RE1	Q9UN81	338 aa		29.02	■■■□□ 2.24
HLA-C-208	ENST00000487245	MOXD1	Q6UVY6	613 aa		29.02	■■■□□ 2.24
HLA-C-208	ENST00000487245	RPGRIP1	Q96KN7	1286 aa		29.02	■■■□□ 2.24
HLA-C-208	ENST00000487245	PURB	Q96QR8	312 aa	Known RBP	29.02	■■■□□ 2.24
HLA-C-208	ENST00000487245	SLC39A2	Q9NP94	309 aa		29.02	■■■□□ 2.24
HLA-C-208	ENST00000487245	AGPAT5	Q9NUQ2	364 aa		29.02	■■■□□ 2.24
HLA-C-208	ENST00000487245	TRIM10	Q9UDY6	481 aa		29.02	■■■□□ 2.24
HLA-C-208	ENST00000487245	PCDHA1	Q9Y5I3	950 aa		29.02	■■■□□ 2.24
HLA-C-208	ENST00000487245	LRRC63	Q05C16	580 aa		29.01	■■■□□ 2.23
HLA-C-208	ENST00000487245	AP3B2	Q13367	1082 aa		29.01	■■■□□ 2.23
HLA-C-208	ENST00000487245	JAKMIP2	Q96AA8	810 aa		29.01	■■■□□ 2.23
HLA-C-208	ENST00000487245	NHEJ1	Q9H9Q4	299 aa	Predicted RBP	29.01	■■■□□ 2.23
HLA-C-208	ENST00000487245	CYP3A7-CYP3A51P	A0A087WV96	503 aa		29	■■■□□ 2.23
HLA-C-208	ENST00000487245	ENTPD3	O75355	529 aa		29	■■■□□ 2.23
HLA-C-208	ENST00000487245	CYP3A7	P24462	503 aa		29	■■■□□ 2.23
HLA-C-208	ENST00000487245	CC2D2B	Q6DHV5	1058 aa		29	■■■□□ 2.23
HLA-C-208	ENST00000487245	GMCL1P1	Q8NEA9	526 aa		29	■■■□□ 2.23
HLA-C-208	ENST00000487245	ANO9	A1A5B4	782 aa		29	■■■□□ 2.23
HLA-C-208	ENST00000487245	ICA1	Q05084	483 aa		29	■■■□□ 2.23
HLA-C-208	ENST00000487245	CDC37	Q16543	378 aa	Predicted RBP	29	■■■□□ 2.23
HLA-C-208	ENST00000487245	MSL1	Q68DK7	614 aa		29	■■■□□ 2.23
HLA-C-208	ENST00000487245	SH3BP5L	Q7L8J4	393 aa		29	■■■□□ 2.23
HLA-C-208	ENST00000487245	KIAA1328	Q86T90	577 aa		29	■■■□□ 2.23
HLA-C-208	ENST00000487245	SUPT20H	Q8NEM7	779 aa		29	■■■□□ 2.23
HLA-C-208	ENST00000487245	BMP2K	Q9NSY1	1161 aa	Predicted RBP	29	■■■□□ 2.23
HLA-C-208	ENST00000487245	MYH7B	A7E2Y1	1941 aa		28.99	■■■□□ 2.23

Retrieved 100 of 20,778 RNA–protein pairs in 87.4 ms