RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 CREB3L3Q68CJ9 461 aa22.61■■□□□ 1.21
LIME1-201ENST00000309546 FCHSD1Q86WN1 690 aa22.61■■□□□ 1.21
LIME1-201ENST00000309546 SCLYQ96I15 445 aa22.61■■□□□ 1.21
LIME1-201ENST00000309546 CDX2Q99626 313 aaPredicted RBP22.61■■□□□ 1.21
LIME1-201ENST00000309546 PDCD2LQ9BRP1 358 aa22.61■■□□□ 1.21
LIME1-201ENST00000309546 SCN5AQ14524 2016 aa22.6■■□□□ 1.21
LIME1-201ENST00000309546 CCDC69A6NI79 296 aa22.6■■□□□ 1.21
LIME1-201ENST00000309546 DNAJB2P25686 324 aa22.6■■□□□ 1.21
LIME1-201ENST00000309546 KIF5BP33176 963 aa22.6■■□□□ 1.21
LIME1-201ENST00000309546 PGM5Q15124 567 aa22.6■■□□□ 1.21
LIME1-201ENST00000309546 BMP2KLQ5H9B9 411 aa22.6■■□□□ 1.21
LIME1-201ENST00000309546 NFRKBQ6P4R8 1299 aa22.6■■□□□ 1.21
LIME1-201ENST00000309546 DDX41Q9UJV9 622 aaKnown RBP22.6■■□□□ 1.21
LIME1-201ENST00000309546 NOD1Q9Y239 953 aa22.6■■□□□ 1.21
LIME1-201ENST00000309546 GRXCR1A8MXD5 290 aa22.59■■□□□ 1.21
LIME1-201ENST00000309546 SH2B2O14492 632 aaPredicted RBP22.59■■□□□ 1.21
LIME1-201ENST00000309546 SORBS3O60504 671 aa22.59■■□□□ 1.21
LIME1-201ENST00000309546 FGBP02675 491 aa22.59■■□□□ 1.21
LIME1-201ENST00000309546 OTOP2Q7RTS6 562 aa22.59■■□□□ 1.21
LIME1-201ENST00000309546 SAMD3Q8N6K7 520 aa22.59■■□□□ 1.21
LIME1-201ENST00000309546 IL31RAQ8NI17 732 aa22.59■■□□□ 1.21
LIME1-201ENST00000309546 MYLIPQ8WY64 445 aa22.59■■□□□ 1.21
LIME1-201ENST00000309546 ZFP91Q96JP5 570 aaPredicted RBP22.59■■□□□ 1.21
LIME1-201ENST00000309546 MTIF3Q9H2K0 278 aaKnown RBP22.59■■□□□ 1.21
LIME1-201ENST00000309546 GBF1Q92538 1859 aa22.59■■□□□ 1.21
LIME1-201ENST00000309546 TANC1Q9C0D5 1861 aa22.59■■□□□ 1.21
LIME1-201ENST00000309546 TMEM265A0A087WTH1 108 aa22.58■■□□□ 1.21
LIME1-201ENST00000309546 RXRAP19793 462 aa22.58■■□□□ 1.21
LIME1-201ENST00000309546 CASTP20810 708 aaKnown RBP22.58■■□□□ 1.21
LIME1-201ENST00000309546 COL9A3Q14050 684 aaPredicted RBP22.58■■□□□ 1.21
LIME1-201ENST00000309546 RASIP1Q5U651 963 aa22.58■■□□□ 1.21
LIME1-201ENST00000309546 RAB11FIP4Q86YS3 637 aa22.58■■□□□ 1.21
LIME1-201ENST00000309546 HERVK_113Q902F9 699 aa22.58■■□□□ 1.21
LIME1-201ENST00000309546 TIFAQ96CG3 184 aa22.58■■□□□ 1.21
LIME1-201ENST00000309546 RRP36Q96EU6 259 aaKnown RBP22.58■■□□□ 1.21
LIME1-201ENST00000309546 TMEM87BQ96K49 555 aa22.58■■□□□ 1.21
LIME1-201ENST00000309546 MTA3Q9BTC8 594 aa22.58■■□□□ 1.21
LIME1-201ENST00000309546 LRRC2Q9BYS8 371 aa22.58■■□□□ 1.21
LIME1-201ENST00000309546 CXXC1Q9P0U4 656 aaPredicted RBP22.58■■□□□ 1.21
LIME1-201ENST00000309546 PLEKHA8P1O95397 391 aa22.57■■□□□ 1.2
LIME1-201ENST00000309546 CCND2P30279 289 aa22.57■■□□□ 1.2
LIME1-201ENST00000309546 PTPN11Q06124 597 aaPredicted RBP22.57■■□□□ 1.2
LIME1-201ENST00000309546 NECTIN1Q15223 517 aa22.57■■□□□ 1.2
LIME1-201ENST00000309546 DGKDQ16760 1214 aa22.57■■□□□ 1.2
LIME1-201ENST00000309546 DHX37Q8IY37 1157 aaKnown RBP22.57■■□□□ 1.2
LIME1-201ENST00000309546 RPUSD2Q8IZ73 545 aaKnown RBP22.57■■□□□ 1.2
LIME1-201ENST00000309546 MAP3K14Q99558 947 aa22.57■■□□□ 1.2
LIME1-201ENST00000309546 SPZ1Q9BXG8 430 aa22.57■■□□□ 1.2
LIME1-201ENST00000309546 SEC63Q9UGP8 760 aaKnown RBP22.57■■□□□ 1.2
LIME1-201ENST00000309546 RGS20O76081 388 aa22.56■■□□□ 1.2
LIME1-201ENST00000309546 PBX2P40425 430 aa22.56■■□□□ 1.2
LIME1-201ENST00000309546 LAMC2Q13753 1193 aa22.56■■□□□ 1.2
LIME1-201ENST00000309546 DEFB128Q7Z7B8 93 aa22.56■■□□□ 1.2
LIME1-201ENST00000309546 VSIG10LQ86VR7 867 aa22.56■■□□□ 1.2
LIME1-201ENST00000309546 TMTC2Q8N394 836 aa22.56■■□□□ 1.2
LIME1-201ENST00000309546 PBX4Q9BYU1 374 aa22.56■■□□□ 1.2
LIME1-201ENST00000309546 ZBBXA8MT70 800 aa22.55■■□□□ 1.2
LIME1-201ENST00000309546 ZNF286BP0CG31 522 aa22.55■■□□□ 1.2
LIME1-201ENST00000309546 PTGISQ16647 500 aa22.55■■□□□ 1.2
LIME1-201ENST00000309546 CMTR1Q8N1G2 835 aaKnown RBP22.55■■□□□ 1.2
LIME1-201ENST00000309546 PPTC7Q8NI37 304 aa22.55■■□□□ 1.2
LIME1-201ENST00000309546 KAT2BQ92831 832 aa22.55■■□□□ 1.2
LIME1-201ENST00000309546 EMID1Q96A84 441 aaPredicted RBP22.55■■□□□ 1.2
LIME1-201ENST00000309546 LZTS2Q9BRK4 669 aa22.55■■□□□ 1.2
LIME1-201ENST00000309546 ALG1Q9BT22 464 aa22.55■■□□□ 1.2
LIME1-201ENST00000309546 SLC12A7Q9Y666 1083 aa22.55■■□□□ 1.2
LIME1-201ENST00000309546 TRIP12Q14669 1992 aaPredicted RBP22.55■■□□□ 1.2
LIME1-201ENST00000309546 GGPS1O95749 300 aa22.54■■□□□ 1.2
LIME1-201ENST00000309546 FOSL2P15408 326 aa22.54■■□□□ 1.2
LIME1-201ENST00000309546 LIFRP42702 1097 aa22.54■■□□□ 1.2
LIME1-201ENST00000309546 GNAQP50148 359 aa22.54■■□□□ 1.2
LIME1-201ENST00000309546 RNF20Q5VTR2 975 aa22.54■■□□□ 1.2
LIME1-201ENST00000309546 KCNV1Q6PIU1 500 aa22.54■■□□□ 1.2
LIME1-201ENST00000309546 RETREG2Q8NC44 543 aa22.54■■□□□ 1.2
LIME1-201ENST00000309546 SMARCC2Q8TAQ2 1214 aa22.54■■□□□ 1.2
LIME1-201ENST00000309546 GPKOWQ92917 476 aaPredicted RBP eCLIP22.54■■□□□ 1.2
LIME1-201ENST00000309546 ZNF576Q9H609 170 aa22.54■■□□□ 1.2
LIME1-201ENST00000309546 DOCK5Q9H7D0 1870 aa22.54■■□□□ 1.2
LIME1-201ENST00000309546 CDC45O75419 566 aa22.53■■□□□ 1.2
LIME1-201ENST00000309546 CALM1P0DP23 149 aa22.53■■□□□ 1.2
LIME1-201ENST00000309546 CALM2P0DP24 149 aa22.53■■□□□ 1.2
LIME1-201ENST00000309546 CALM3P0DP25 149 aa22.53■■□□□ 1.2
LIME1-201ENST00000309546 UBA1P22314 1058 aaKnown RBP22.53■■□□□ 1.2
LIME1-201ENST00000309546 PSEN2P49810 448 aa22.53■■□□□ 1.2
LIME1-201ENST00000309546 BFSP2Q13515 415 aa22.53■■□□□ 1.2
LIME1-201ENST00000309546 GRIN2CQ14957 1233 aa22.53■■□□□ 1.2
LIME1-201ENST00000309546 GDF6Q6KF10 455 aaPredicted RBP22.53■■□□□ 1.2
LIME1-201ENST00000309546 MICU3Q86XE3 530 aa22.53■■□□□ 1.2
LIME1-201ENST00000309546 SRBD1Q8N5C6 995 aaKnown RBP22.53■■□□□ 1.2
LIME1-201ENST00000309546 MAFAQ8NHW3 353 aaPredicted RBP22.53■■□□□ 1.2
LIME1-201ENST00000309546 CUL5Q93034 780 aa22.53■■□□□ 1.2
LIME1-201ENST00000309546 SPATA33Q96N06 139 aa22.53■■□□□ 1.2
LIME1-201ENST00000309546 KATNAL1Q9BW62 490 aa22.53■■□□□ 1.2
LIME1-201ENST00000309546 PITPNM1O00562 1244 aa22.52■■□□□ 1.2
LIME1-201ENST00000309546 PFKMP08237 780 aa22.52■■□□□ 1.2
LIME1-201ENST00000309546 SMARCA1P28370 1054 aa22.52■■□□□ 1.2
LIME1-201ENST00000309546 MFSD10Q14728 455 aa22.52■■□□□ 1.2
LIME1-201ENST00000309546 RAB30Q15771 203 aa22.52■■□□□ 1.2
LIME1-201ENST00000309546 CELF3Q5SZQ8 465 aaKnown RBP22.52■■□□□ 1.2
LIME1-201ENST00000309546 MYSM1Q5VVJ2 828 aa22.52■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms