RNA–Protein interactions for RNA: YMR153W

NUP53, Transcript of FG-nucleoporin component of central core of nuclear pore complex (NPC), yeast

Gene NUP53, Length 1,428 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP53	YMR153W	RMA1	P36001	430 aa	Known RBP	7.32	□□□□□ -1.24
NUP53	YMR153W	SET3	P36124	751 aa		7.32	□□□□□ -1.24
NUP53	YMR153W	CBP4	P37267	147 aa		7.32	□□□□□ -1.24
NUP53	YMR153W	CTP1	P38152	299 aa		7.32	□□□□□ -1.24
NUP53	YMR153W	LIN1	P38852	340 aa	Predicted RBP	7.32	□□□□□ -1.24
NUP53	YMR153W	PAC11	P40960	533 aa		7.32	□□□□□ -1.24
NUP53	YMR153W	IKS1	P47042	667 aa		7.32	□□□□□ -1.24
NUP53	YMR153W	LIA1	P47120	325 aa	Known RBP	7.32	□□□□□ -1.24
NUP53	YMR153W	YPL109C	Q02981	657 aa		7.32	□□□□□ -1.24
NUP53	YMR153W	BOP2	Q06150	570 aa		7.32	□□□□□ -1.24
NUP53	YMR153W	TRX3	P25372	127 aa		7.31	□□□□□ -1.24
NUP53	YMR153W	MGR1	P25573	417 aa		7.31	□□□□□ -1.24
NUP53	YMR153W	LYP1	P32487	611 aa		7.31	□□□□□ -1.24
NUP53	YMR153W	CDC5	P32562	705 aa		7.31	□□□□□ -1.24
NUP53	YMR153W	PET127	P32606	800 aa		7.31	□□□□□ -1.24
NUP53	YMR153W	HES1	P35843	434 aa		7.31	□□□□□ -1.24
NUP53	YMR153W	MET12	P46151	657 aa		7.31	□□□□□ -1.24
NUP53	YMR153W	YPT32	P51996	222 aa	Known RBP	7.31	□□□□□ -1.24
NUP53	YMR153W	RCF2	P53721	224 aa		7.31	□□□□□ -1.24
NUP53	YMR153W	UBX4	P54730	416 aa		7.31	□□□□□ -1.24
NUP53	YMR153W	PRP38	Q00723	242 aa	Predicted RBP	7.31	□□□□□ -1.24
NUP53	YMR153W	GIP3	Q03016	1276 aa		7.31	□□□□□ -1.24
NUP53	YMR153W	MMT2	Q08970	484 aa		7.31	□□□□□ -1.24
NUP53	YMR153W	YBR056W-A	I2HB52	66 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	RHO2	P06781	192 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	SPT3	P06844	337 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	HSC82	P15108	705 aa	Known RBP	7.3	□□□□□ -1.24
NUP53	YMR153W	BAS1	P22035	811 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	SGV1	P23293	657 aa	Known RBP	7.3	□□□□□ -1.24
NUP53	YMR153W	CHA1	P25379	360 aa	Known RBP	7.3	□□□□□ -1.24
NUP53	YMR153W	SPS22	P25380	463 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	HEM3	P28789	327 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	MLS1	P30952	554 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	CDC12	P32468	407 aa	Known RBP	7.3	□□□□□ -1.24
NUP53	YMR153W	UGP1	P32861	499 aa	Known RBP	7.3	□□□□□ -1.24
NUP53	YMR153W	ASC1	P38011	319 aa	Known RBP	7.3	□□□□□ -1.24
NUP53	YMR153W	RIM2	P38127	377 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	BMT2	P38278	337 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	YHB1	P39676	399 aa	Known RBP	7.3	□□□□□ -1.24
NUP53	YMR153W	OAF1	P39720	1047 aa	Predicted RBP	7.3	□□□□□ -1.24
NUP53	YMR153W	ARB1	P40024	610 aa	Known RBP	7.3	□□□□□ -1.24
NUP53	YMR153W	NEO1	P40527	1151 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	MAD2	P40958	196 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	FKH2	P41813	862 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	YGL176C	P46945	554 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	JHD2	P47156	728 aa	Predicted RBP	7.3	□□□□□ -1.24
NUP53	YMR153W	YJR154W	P47181	346 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	YML131W	Q03102	365 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	TPP1	Q03796	238 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	YOL024W	Q08172	172 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	RRP40	Q08285	240 aa	Known RBP	7.3	□□□□□ -1.24
NUP53	YMR153W	YOL159C	Q08300	171 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	RUP1	Q12242	671 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	YCL012C	Q8J0M4	134 aa		7.3	□□□□□ -1.24
NUP53	YMR153W	GCN1	P33892	2672 aa	Known RBP	7.3	□□□□□ -1.24
NUP53	YMR153W	CDC26	P14724	124 aa		7.29	□□□□□ -1.24
NUP53	YMR153W	TAH1	P25638	111 aa	Predicted RBP	7.29	□□□□□ -1.24
NUP53	YMR153W	ERG1	P32476	496 aa	Known RBP	7.29	□□□□□ -1.24
NUP53	YMR153W	KAP122	P32767	1081 aa		7.29	□□□□□ -1.24
NUP53	YMR153W	RPS1A	P33442	255 aa	Known RBP	7.29	□□□□□ -1.24
NUP53	YMR153W	RPL10	P41805	221 aa	Known RBP	7.29	□□□□□ -1.24
NUP53	YMR153W	GCD10	P41814	478 aa		7.29	□□□□□ -1.24
NUP53	YMR153W	SDT1	P53078	280 aa		7.29	□□□□□ -1.24
NUP53	YMR153W	GTR2	P53290	341 aa		7.29	□□□□□ -1.24
NUP53	YMR153W	YNL140C	P53910	189 aa		7.29	□□□□□ -1.24
NUP53	YMR153W	XYL2	Q07993	356 aa		7.29	□□□□□ -1.24
NUP53	YMR153W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	7.29	□□□□□ -1.24	not detected
NUP53	YMR153W	SPE4	Q12455	300 aa		7.29	□□□□□ -1.24
NUP53	YMR153W	COS2	P0CX12	379 aa		7.28	□□□□□ -1.24
NUP53	YMR153W	COS3	P0CX13	379 aa		7.28	□□□□□ -1.24
NUP53	YMR153W	GCD2	P12754	651 aa	Predicted RBP	7.28	□□□□□ -1.24
NUP53	YMR153W	MXR2	P25566	168 aa		7.28	□□□□□ -1.24
NUP53	YMR153W	SUI1	P32911	108 aa	Known RBP	7.28	□□□□□ -1.24
NUP53	YMR153W	VPS21	P36017	210 aa	Known RBP	7.28	□□□□□ -1.24
NUP53	YMR153W	OAF3	P36023	863 aa		7.28	□□□□□ -1.24
NUP53	YMR153W	EAP1	P36041	632 aa	Known RBP	7.28	□□□□□ -1.24
NUP53	YMR153W	PFK26	P40433	827 aa	Known RBP	7.28	□□□□□ -1.24
NUP53	YMR153W	COS4	P43542	379 aa		7.28	□□□□□ -1.24
NUP53	YMR153W	YGL260W	P53056	76 aa		7.28	□□□□□ -1.24
NUP53	YMR153W	ROG1	P53118	685 aa		7.28	□□□□□ -1.24
NUP53	YMR153W	YGR053C	P53234	283 aa		7.28	□□□□□ -1.24
NUP53	YMR153W	MET31	Q03081	177 aa		7.28	□□□□□ -1.24
NUP53	YMR153W	TDA5	Q06417	326 aa	Known RBP	7.28	□□□□□ -1.24
NUP53	YMR153W	HDA3	Q06623	655 aa		7.28	□□□□□ -1.24
NUP53	YMR153W	ENT4	Q07872	247 aa		7.28	□□□□□ -1.24
NUP53	YMR153W	TMA46	Q12000	345 aa	Known RBP	7.28	□□□□□ -1.24
NUP53	YMR153W	YLR049C	Q12110	428 aa		7.28	□□□□□ -1.24
NUP53	YMR153W	COR1	P07256	457 aa		7.27	□□□□□ -1.24
NUP53	YMR153W	HOM3	P10869	527 aa		7.27	□□□□□ -1.24
NUP53	YMR153W	SRV2	P17555	526 aa	Known RBP	7.27	□□□□□ -1.24
NUP53	YMR153W	KIP2	P28743	706 aa		7.27	□□□□□ -1.24
NUP53	YMR153W	YSC84	P32793	468 aa		7.27	□□□□□ -1.24
NUP53	YMR153W	OMA1	P36163	345 aa		7.27	□□□□□ -1.24
NUP53	YMR153W	SHU2	P38957	223 aa		7.27	□□□□□ -1.24
NUP53	YMR153W	YDR089W	P38966	869 aa		7.27	□□□□□ -1.24
NUP53	YMR153W	MBP1	P39678	833 aa		7.27	□□□□□ -1.24
NUP53	YMR153W	GUS1	P46655	708 aa	Known RBP RIP-Chip data	7.27	□□□□□ -1.24	not detected
NUP53	YMR153W	ARC1	P46672	376 aa	Known RBP	7.27	□□□□□ -1.24
NUP53	YMR153W	YGR012W	P53206	393 aa		7.27	□□□□□ -1.24
NUP53	YMR153W	SLM2	P53955	656 aa		7.27	□□□□□ -1.24

Retrieved 100 of 5,963 RNA–protein pairs in 27.5 ms