RNA–Protein interactions for RNA: YLR005W

SSL1, Transcript of Subunit of the core form of RNA polymerase transcription factor TFIIH, yeast

Gene SSL1, Length 1,386 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSL1	YLR005W	NOP15	P53927	220 aa	Predicted RBP	3.78	□□□□□ -1.8
SSL1	YLR005W	PET117	Q02771	107 aa		3.78	□□□□□ -1.8
SSL1	YLR005W	VHS1	Q03785	461 aa		3.78	□□□□□ -1.8
SSL1	YLR005W	ARP9	Q05123	467 aa		3.78	□□□□□ -1.8
SSL1	YLR005W	ASM4	Q05166	528 aa		3.78	□□□□□ -1.8
SSL1	YLR005W	DIN7	Q12086	430 aa		3.78	□□□□□ -1.8
SSL1	YLR005W	LAG2	Q92325	660 aa		3.78	□□□□□ -1.8
SSL1	YLR005W	HSH49	Q99181	213 aa	Predicted RBP	3.78	□□□□□ -1.8
SSL1	YLR005W	YLR149C	Q99296	730 aa		3.78	□□□□□ -1.8
SSL1	YLR005W	YLR462W	O13556	202 aa		3.77	□□□□□ -1.81
SSL1	YLR005W	FUR1	P18562	216 aa	Known RBP	3.77	□□□□□ -1.81
SSL1	YLR005W	HXT1	P32465	570 aa		3.77	□□□□□ -1.81
SSL1	YLR005W	GDA1	P32621	518 aa		3.77	□□□□□ -1.81
SSL1	YLR005W	CNS1	P33313	385 aa		3.77	□□□□□ -1.81
SSL1	YLR005W	YPT52	P36018	234 aa	Known RBP	3.77	□□□□□ -1.81
SSL1	YLR005W	MRPL15	P36523	253 aa		3.77	□□□□□ -1.81
SSL1	YLR005W	YHL049C	P38722	271 aa		3.77	□□□□□ -1.81
SSL1	YLR005W	YHR045W	P38775	560 aa		3.77	□□□□□ -1.81
SSL1	YLR005W	SET5	P38890	526 aa	Known RBP	3.77	□□□□□ -1.81
SSL1	YLR005W	BEM4	P39011	633 aa		3.77	□□□□□ -1.81
SSL1	YLR005W	YEL073C	P39974	107 aa		3.77	□□□□□ -1.81
SSL1	YLR005W	GIM4	P40005	111 aa	Known RBP	3.77	□□□□□ -1.81
SSL1	YLR005W	LSM5	P40089	93 aa	Known RBP	3.77	□□□□□ -1.81
SSL1	YLR005W	ALG8	P40351	577 aa		3.77	□□□□□ -1.81
SSL1	YLR005W	DPH1	P40487	425 aa	Known RBP	3.77	□□□□□ -1.81
SSL1	YLR005W	DJP1	P40564	432 aa		3.77	□□□□□ -1.81
SSL1	YLR005W	PFA3	P42836	336 aa		3.77	□□□□□ -1.81
SSL1	YLR005W	QRI1	P43123	477 aa	Known RBP	3.77	□□□□□ -1.81
SSL1	YLR005W	YFL064C	P43540	174 aa		3.77	□□□□□ -1.81
SSL1	YLR005W	ALK1	P43633	760 aa	Known RBP	3.77	□□□□□ -1.81
SSL1	YLR005W	ARE2	P53629	642 aa	Known RBP	3.77	□□□□□ -1.81
SSL1	YLR005W	RSC3	Q06639	885 aa		3.77	□□□□□ -1.81
SSL1	YLR005W	PFA4	Q12006	378 aa		3.77	□□□□□ -1.81
SSL1	YLR005W	YLR125W	Q12138	136 aa		3.77	□□□□□ -1.81
SSL1	YLR005W	YBL111C	Q3E7Y5	667 aa		3.77	□□□□□ -1.81
SSL1	YLR005W	YLR415C	O13578	112 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	RAD10	P06838	210 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	ERG11	P10614	530 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	SEC62	P21825	274 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	VPS34	P22543	875 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	YCR006C	P25350	157 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	MVD1	P32377	396 aa	Known RBP	3.76	□□□□□ -1.81
SSL1	YLR005W	MF(ALPHA)2	P32435	120 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	RKM3	P38222	552 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	YHR182W	P38870	785 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	DHH1	P39517	506 aa	Known RBP	3.76	□□□□□ -1.81
SSL1	YLR005W	PXA1	P41909	870 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	YJL163C	P46996	555 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	UBX6	P47049	396 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	PEX8	P53248	589 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	DAM1	P53267	343 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	BTN2	P53286	410 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	YGR250C	P53316	781 aa	Known RBP	3.76	□□□□□ -1.81
SSL1	YLR005W	PRO2	P54885	456 aa	Known RBP	3.76	□□□□□ -1.81
SSL1	YLR005W	SSL2	Q00578	843 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	OSH6	Q02201	448 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	NRG1	Q03125	231 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	TRS23	Q03784	219 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	YDR514C	Q04408	483 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	YDR109C	Q04585	715 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	SOV1	Q04748	898 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	IRC13	Q08630	104 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	YPL272C	Q08984	517 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	GLE1	Q12315	538 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	HSP42	Q12329	375 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	AVL9	Q12500	764 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	YGR161W-C	Q3E744	92 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	BCY1	P07278	416 aa	Known RBP	3.76	□□□□□ -1.81
SSL1	YLR005W	LAT1	P12695	482 aa	Known RBP	3.76	□□□□□ -1.81
SSL1	YLR005W	IMG1	P25626	169 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	BUD14	P27637	709 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	NGG1	P32494	702 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	SMI1	P32566	505 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	SKT5	P34226	696 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	KES1	P35844	434 aa	Known RBP	3.76	□□□□□ -1.81
SSL1	YLR005W	MRP21	P38175	177 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	YBP1	P38315	674 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	GND1	P38720	489 aa	Known RBP	3.76	□□□□□ -1.81
SSL1	YLR005W	TCD1	P38756	429 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	END3	P39013	349 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	LCP5	P40079	357 aa	Predicted RBP	3.76	□□□□□ -1.81
SSL1	YLR005W	ERR3	P42222	437 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	ELP2	P42935	788 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	PET130	P47065	347 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	NNF2	P53253	936 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	ESF2	P53743	316 aa	Known RBP	3.76	□□□□□ -1.81
SSL1	YLR005W	PEX25	Q02969	394 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	TRS31	Q03337	283 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	RPN9	Q04062	393 aa	Known RBP	3.76	□□□□□ -1.81
SSL1	YLR005W	GAD1	Q04792	585 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	RRP45	Q05636	305 aa	Known RBP	3.76	□□□□□ -1.81
SSL1	YLR005W	VPS38	Q05919	439 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	MRH1	Q12117	320 aa	Predicted RBP	3.76	□□□□□ -1.81
SSL1	YLR005W	MSL5	Q12186	476 aa	Known RBP RIP-Chip data	3.76	□□□□□ -1.81	not detected
SSL1	YLR005W	LDB17	Q12342	491 aa		3.76	□□□□□ -1.81
SSL1	YLR005W	HRP1	Q99383	534 aa	Known RBP	3.76	□□□□□ -1.81
SSL1	YLR005W	CYR1	P08678	2026 aa	Known RBP	3.75	□□□□□ -1.81
SSL1	YLR005W	IMA3	P0CW40	589 aa		3.75	□□□□□ -1.81
SSL1	YLR005W	IMA4	P0CW41	589 aa		3.75	□□□□□ -1.81
SSL1	YLR005W	HOM3	P10869	527 aa		3.75	□□□□□ -1.81

Retrieved 100 of 5,963 RNA–protein pairs in 54.1 ms