RNA–Protein interactions for RNA: ENST00000542641.5

YBX3-213, Transcript of Y-box binding protein 3, humanhuman

TSL 4

Gene YBX3, Length 669 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-213ENST00000542641 ZNF792Q3KQV3 632 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 JAKMIP3Q5VZ66 844 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 MCTP2Q6DN12 878 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 FAM133AQ8N9E0 248 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 DAGLBQ8NCG7 672 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 USP6NLQ92738 828 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 PURBQ96QR8 312 aaKnown RBP13.28□□□□□ -0.28
YBX3-213ENST00000542641 TAAR1Q96RJ0 339 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 TMEM260Q9NX78 707 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 COL20A1Q9P218 1284 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 ADD3Q9UEY8 706 aaKnown RBP13.28□□□□□ -0.28
YBX3-213ENST00000542641 SRRDQ9UH36 339 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 GABRQQ9UN88 632 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 TRIM17Q9Y577 477 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 SMCHD1A6NHR9 2005 aa13.28□□□□□ -0.28
YBX3-213ENST00000542641 FOSP01100 380 aaPredicted RBP13.27□□□□□ -0.29
YBX3-213ENST00000542641 PRKCZQ05513 592 aa13.27□□□□□ -0.29
YBX3-213ENST00000542641 GNL2Q13823 731 aaKnown RBP13.27□□□□□ -0.29
YBX3-213ENST00000542641 ARHGEF16Q5VV41 709 aa13.27□□□□□ -0.29
YBX3-213ENST00000542641 OTOP1Q7RTM1 612 aa13.27□□□□□ -0.29
YBX3-213ENST00000542641 DIS3L2Q8IYB7 885 aaKnown RBP13.27□□□□□ -0.29
YBX3-213ENST00000542641 RASGRP4Q8TDF6 673 aa13.27□□□□□ -0.29
YBX3-213ENST00000542641 OXER1Q8TDS5 423 aa13.27□□□□□ -0.29
YBX3-213ENST00000542641 RMDN3Q96TC7 470 aa13.27□□□□□ -0.29
YBX3-213ENST00000542641 TSPYL2Q9H2G4 693 aaPredicted RBP13.27□□□□□ -0.29
YBX3-213ENST00000542641 PCDHA6Q9UN73 950 aa13.27□□□□□ -0.29
YBX3-213ENST00000542641 PCDHA8Q9Y5H6 950 aa13.27□□□□□ -0.29
YBX3-213ENST00000542641 VPS37CA5D8V6 355 aaPredicted RBP13.26□□□□□ -0.29
YBX3-213ENST00000542641 SOWAHBA6NEL2 793 aa13.26□□□□□ -0.29
YBX3-213ENST00000542641 BTBD18B2RXH4 712 aa13.26□□□□□ -0.29
YBX3-213ENST00000542641 HOXC6P09630 235 aa13.26□□□□□ -0.29
YBX3-213ENST00000542641 XRCC5P13010 732 aaKnown RBP13.26□□□□□ -0.29
YBX3-213ENST00000542641 PRMT2P55345 433 aa13.26□□□□□ -0.29
YBX3-213ENST00000542641 NR5A1Q13285 461 aa13.26□□□□□ -0.29
YBX3-213ENST00000542641 AP3B2Q13367 1082 aa13.26□□□□□ -0.29
YBX3-213ENST00000542641 GSE1Q14687 1217 aa13.26□□□□□ -0.29
YBX3-213ENST00000542641 MCTP1Q6DN14 999 aa13.26□□□□□ -0.29
YBX3-213ENST00000542641 DNERQ8NFT8 737 aa13.26□□□□□ -0.29
YBX3-213ENST00000542641 NPLOC4Q8TAT6 608 aa13.26□□□□□ -0.29
YBX3-213ENST00000542641 NSUN6Q8TEA1 469 aaKnown RBP13.26□□□□□ -0.29
YBX3-213ENST00000542641 MAML3Q96JK9 1138 aa13.26□□□□□ -0.29
YBX3-213ENST00000542641 PGBD1Q96JS3 809 aa13.26□□□□□ -0.29
YBX3-213ENST00000542641 MPHOSPH6Q99547 160 aaKnown RBP13.26□□□□□ -0.29
YBX3-213ENST00000542641 APBA2Q99767 749 aa13.26□□□□□ -0.29
YBX3-213ENST00000542641 EHMT1Q9H9B1 1298 aa13.26□□□□□ -0.29
YBX3-213ENST00000542641 PXMP2Q9NR77 195 aa13.26□□□□□ -0.29
YBX3-213ENST00000542641 DIS3Q9Y2L1 958 aaKnown RBP13.26□□□□□ -0.29
YBX3-213ENST00000542641 CCDC194A0A1B0GVG4 234 aa13.25□□□□□ -0.29
YBX3-213ENST00000542641 B4DLN1 442 aa13.25□□□□□ -0.29
YBX3-213ENST00000542641 M0R2N6 131 aa13.25□□□□□ -0.29
YBX3-213ENST00000542641 STX6O43752 255 aa13.25□□□□□ -0.29
YBX3-213ENST00000542641 PDIA4P13667 645 aaKnown RBP13.25□□□□□ -0.29
YBX3-213ENST00000542641 EIF2AK2P19525 551 aaKnown RBP13.25□□□□□ -0.29
YBX3-213ENST00000542641 ALDH5A1P51649 535 aaPredicted RBP13.25□□□□□ -0.29
YBX3-213ENST00000542641 KRT25Q7Z3Z0 450 aa13.25□□□□□ -0.29
YBX3-213ENST00000542641 ZNF467Q7Z7K2 595 aaPredicted RBP13.25□□□□□ -0.29
YBX3-213ENST00000542641 RAET1EQ8TD07 263 aa13.25□□□□□ -0.29
YBX3-213ENST00000542641 IPO9Q96P70 1041 aaKnown RBP13.25□□□□□ -0.29
YBX3-213ENST00000542641 ANO3Q9BYT9 981 aa13.25□□□□□ -0.29
YBX3-213ENST00000542641 FOXP1Q9H334 677 aaPredicted RBP13.25□□□□□ -0.29
YBX3-213ENST00000542641 ASTN1O14525 1302 aa13.24□□□□□ -0.29
YBX3-213ENST00000542641 ASB14A6NK59 587 aa13.24□□□□□ -0.29
YBX3-213ENST00000542641 UBXN2AP68543 259 aa13.24□□□□□ -0.29
YBX3-213ENST00000542641 IRF5Q13568 498 aa13.24□□□□□ -0.29
YBX3-213ENST00000542641 NONOQ15233 471 aaKnown RBP eCLIP13.24□□□□□ -0.29
YBX3-213ENST00000542641 CCL14Q16627 93 aa13.24□□□□□ -0.29
YBX3-213ENST00000542641 PIK3AP1Q6ZUJ8 805 aa13.24□□□□□ -0.29
YBX3-213ENST00000542641 FGD4Q96M96 766 aa13.24□□□□□ -0.29
YBX3-213ENST00000542641 IWS1Q96ST2 819 aa13.24□□□□□ -0.29
YBX3-213ENST00000542641 MTMR6Q9Y217 621 aa13.24□□□□□ -0.29
YBX3-213ENST00000542641 ZSWIM8A7E2V4 1837 aa13.23□□□□□ -0.29
YBX3-213ENST00000542641 PLXNB2O15031 1838 aa13.23□□□□□ -0.29
YBX3-213ENST00000542641 RPTORQ8N122 1335 aa13.23□□□□□ -0.29
YBX3-213ENST00000542641 LOC102724159A0A0B4J2E5 919 aa13.23□□□□□ -0.29
YBX3-213ENST00000542641 ADCY3O60266 1144 aa13.23□□□□□ -0.29
YBX3-213ENST00000542641 NR3C2P08235 984 aa13.23□□□□□ -0.29
YBX3-213ENST00000542641 MYCLP12524 364 aaPredicted RBP13.23□□□□□ -0.29
YBX3-213ENST00000542641 U2AF2P26368 475 aaKnown RBP eCLIP13.23□□□□□ -0.292e-8■■□□□ 14.4
YBX3-213ENST00000542641 PDE4DQ08499 809 aa13.23□□□□□ -0.29
YBX3-213ENST00000542641 PGM5Q15124 567 aa13.23□□□□□ -0.29
YBX3-213ENST00000542641 PWP2Q15269 919 aaKnown RBP13.23□□□□□ -0.29
YBX3-213ENST00000542641 OLFML2BQ68BL8 750 aa13.23□□□□□ -0.29
YBX3-213ENST00000542641 MAMDC4Q6UXC1 1216 aa13.23□□□□□ -0.29
YBX3-213ENST00000542641 CTU1Q7Z7A3 348 aaKnown RBP13.23□□□□□ -0.29
YBX3-213ENST00000542641 NOSTRINQ8IVI9 506 aa13.23□□□□□ -0.29
YBX3-213ENST00000542641 TRMT44Q8IYL2 757 aaKnown RBP13.23□□□□□ -0.29
YBX3-213ENST00000542641 MSL3Q8N5Y2 521 aaKnown RBP13.23□□□□□ -0.29
YBX3-213ENST00000542641 TBCKQ8TEA7 893 aa13.23□□□□□ -0.29
YBX3-213ENST00000542641 TNFRSF25Q93038 417 aa13.23□□□□□ -0.29
YBX3-213ENST00000542641 PDCD2LQ9BRP1 358 aa13.23□□□□□ -0.29
YBX3-213ENST00000542641 TINF2Q9BSI4 451 aa13.23□□□□□ -0.29
YBX3-213ENST00000542641 FLRT1Q9NZU1 646 aa13.23□□□□□ -0.29
YBX3-213ENST00000542641 CIZ1Q9ULV3 898 aaPredicted RBP13.23□□□□□ -0.29
YBX3-213ENST00000542641 PTPN22Q9Y2R2 807 aa13.23□□□□□ -0.29
YBX3-213ENST00000542641 MGAMO43451 1857 aa13.23□□□□□ -0.29
YBX3-213ENST00000542641 FRMPD4Q14CM0 1322 aa13.22□□□□□ -0.29
YBX3-213ENST00000542641 KIF28PB7ZC32 967 aa13.22□□□□□ -0.29
YBX3-213ENST00000542641 EDNRBP24530 442 aa13.22□□□□□ -0.29
YBX3-213ENST00000542641 CCND2P30279 289 aa13.22□□□□□ -0.29
YBX3-213ENST00000542641 SREBF1P36956 1147 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 158.7 ms