RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 PCDHA2Q9Y5H9 948 aa9.99□□□□□ -0.81
NUP54-215ENST00000514313 TRBV23OR9-2A0A075B6M9 112 aa9.98□□□□□ -0.81
NUP54-215ENST00000514313 TRAF5O00463 557 aa9.98□□□□□ -0.81
NUP54-215ENST00000514313 ZEB2O60315 1214 aa9.98□□□□□ -0.81
NUP54-215ENST00000514313 SOD2P04179 222 aa9.98□□□□□ -0.81
NUP54-215ENST00000514313 LTKP29376 864 aa9.98□□□□□ -0.81
NUP54-215ENST00000514313 GATA4P43694 442 aa9.98□□□□□ -0.81
NUP54-215ENST00000514313 IL2P60568 153 aa9.98□□□□□ -0.81
NUP54-215ENST00000514313 MCL1Q07820 350 aa9.98□□□□□ -0.81
NUP54-215ENST00000514313 NFIAQ12857 509 aa9.98□□□□□ -0.81
NUP54-215ENST00000514313 LAPTM5Q13571 262 aa9.98□□□□□ -0.81
NUP54-215ENST00000514313 TMEM177Q53S58 311 aa9.98□□□□□ -0.81
NUP54-215ENST00000514313 ZPBP2Q6X784 338 aa9.98□□□□□ -0.81
NUP54-215ENST00000514313 CPNE8Q86YQ8 564 aa9.98□□□□□ -0.81
NUP54-215ENST00000514313 DBNDD2Q9BQY9 259 aa9.98□□□□□ -0.81
NUP54-215ENST00000514313 METTL22Q9BUU2 404 aaPredicted RBP9.98□□□□□ -0.81
NUP54-215ENST00000514313 OSBPL1AQ9BXW6 950 aa9.98□□□□□ -0.81
NUP54-215ENST00000514313 CCDC8Q9H0W5 538 aaPredicted RBP9.98□□□□□ -0.81
NUP54-215ENST00000514313 IPPKQ9H8X2 491 aa9.98□□□□□ -0.81
NUP54-215ENST00000514313 SEMA3GQ9NS98 782 aa9.98□□□□□ -0.81
NUP54-215ENST00000514313 PCDHA11Q9Y5I1 949 aa9.98□□□□□ -0.81
NUP54-215ENST00000514313 SMC1BQ8NDV3 1235 aa9.97□□□□□ -0.81
NUP54-215ENST00000514313 SHKBP1Q8TBC3 707 aa9.97□□□□□ -0.81
NUP54-215ENST00000514313 TSR2Q969E8 191 aaKnown RBP9.97□□□□□ -0.81
NUP54-215ENST00000514313 LRRC4CQ9HCJ2 640 aa9.97□□□□□ -0.81
NUP54-215ENST00000514313 TMEM82A0PJX8 343 aa9.96□□□□□ -0.82
NUP54-215ENST00000514313 CCDC66A2RUB6 948 aa9.96□□□□□ -0.82
NUP54-215ENST00000514313 WNT9AO14904 365 aa9.96□□□□□ -0.82
NUP54-215ENST00000514313 PYGMP11217 842 aa9.96□□□□□ -0.82
NUP54-215ENST00000514313 GRK2P25098 689 aa9.96□□□□□ -0.82
NUP54-215ENST00000514313 GRK3P35626 688 aa9.96□□□□□ -0.82
NUP54-215ENST00000514313 DNM2P50570 870 aa9.96□□□□□ -0.82
NUP54-215ENST00000514313 NEK2P51955 445 aa9.96□□□□□ -0.82
NUP54-215ENST00000514313 SART3Q15020 963 aaKnown RBP9.96□□□□□ -0.82
NUP54-215ENST00000514313 NFE2Q16621 373 aaPredicted RBP9.96□□□□□ -0.82
NUP54-215ENST00000514313 CNTD1Q8N815 330 aa9.96□□□□□ -0.82
NUP54-215ENST00000514313 NAT16Q8N8M0 369 aa9.96□□□□□ -0.82
NUP54-215ENST00000514313 CHST14Q8NCH0 376 aa9.96□□□□□ -0.82
NUP54-215ENST00000514313 GPR101Q96P66 508 aaPredicted RBP9.96□□□□□ -0.82
NUP54-215ENST00000514313 PUS7LQ9H0K6 701 aaKnown RBP9.96□□□□□ -0.82
NUP54-215ENST00000514313 CABP5Q9NP86 173 aa9.96□□□□□ -0.82
NUP54-215ENST00000514313 B4GALT6Q9UBX8 382 aa9.96□□□□□ -0.82
NUP54-215ENST00000514313 TRHDEQ9UKU6 1024 aa9.96□□□□□ -0.82
NUP54-215ENST00000514313 GAS7O60861 476 aa9.95□□□□□ -0.82
NUP54-215ENST00000514313 FKBP9O95302 570 aa9.95□□□□□ -0.82
NUP54-215ENST00000514313 MECP2P51608 486 aaKnown RBP9.95□□□□□ -0.82
NUP54-215ENST00000514313 TEKQ02763 1124 aa9.95□□□□□ -0.82
NUP54-215ENST00000514313 FKBP9P1Q75LS8 142 aa9.95□□□□□ -0.82
NUP54-215ENST00000514313 OVCH1Q7RTY7 1134 aa9.95□□□□□ -0.82
NUP54-215ENST00000514313 PLD6Q8N2A8 252 aaKnown RBP9.95□□□□□ -0.82
NUP54-215ENST00000514313 CISD2Q8N5K1 135 aaKnown RBP9.95□□□□□ -0.82
NUP54-215ENST00000514313 CHMP4AQ9BY43 222 aa9.95□□□□□ -0.82
NUP54-215ENST00000514313 ATG3Q9NT62 314 aa9.95□□□□□ -0.82
NUP54-215ENST00000514313 THG1LQ9NWX6 298 aaKnown RBP9.95□□□□□ -0.82
NUP54-215ENST00000514313 ERVK13-1Q9NX77 482 aa9.95□□□□□ -0.82
NUP54-215ENST00000514313 PITPNM2Q9BZ72 1349 aa9.95□□□□□ -0.82
NUP54-215ENST00000514313 RNF225M0QZC1 329 aaPredicted RBP9.94□□□□□ -0.82
NUP54-215ENST00000514313 ENDOUP21128 410 aaKnown RBP9.94□□□□□ -0.82
NUP54-215ENST00000514313 FAM47CQ5HY64 1035 aa9.94□□□□□ -0.82
NUP54-215ENST00000514313 CYP2R1Q6VVX0 501 aa9.94□□□□□ -0.82
NUP54-215ENST00000514313 CREG2Q8IUH2 290 aa9.94□□□□□ -0.82
NUP54-215ENST00000514313 CHTF18Q8WVB6 975 aa9.94□□□□□ -0.82
NUP54-215ENST00000514313 FBXW5Q969U6 566 aa9.94□□□□□ -0.82
NUP54-215ENST00000514313 TPSG1Q9NRR2 321 aa9.94□□□□□ -0.82
NUP54-215ENST00000514313 ZKSCAN5Q9Y2L8 839 aa9.94□□□□□ -0.82
NUP54-215ENST00000514313 SHTN1A0MZ66 631 aa9.93□□□□□ -0.82
NUP54-215ENST00000514313 C7orf72A4D263 438 aa9.93□□□□□ -0.82
NUP54-215ENST00000514313 FAM47E-STBD1D6RA91 191 aa9.93□□□□□ -0.82
NUP54-215ENST00000514313 MYO1BO43795 1136 aa9.93□□□□□ -0.82
NUP54-215ENST00000514313 PRKD3O94806 890 aa9.93□□□□□ -0.82
NUP54-215ENST00000514313 ESR1P03372 595 aa9.93□□□□□ -0.82
NUP54-215ENST00000514313 ATP2A2P16615 1042 aaKnown RBP9.93□□□□□ -0.82
NUP54-215ENST00000514313 LSSP48449 732 aa9.93□□□□□ -0.82
NUP54-215ENST00000514313 EGR3Q06889 387 aa9.93□□□□□ -0.82
NUP54-215ENST00000514313 TMPRSS7Q7RTY8 843 aa9.93□□□□□ -0.82
NUP54-215ENST00000514313 WAPLQ7Z5K2 1190 aa9.93□□□□□ -0.82
NUP54-215ENST00000514313 YIPF4Q9BSR8 244 aa9.93□□□□□ -0.82
NUP54-215ENST00000514313 ATP13A1Q9HD20 1204 aa9.93□□□□□ -0.82
NUP54-215ENST00000514313 CBLCQ9ULV8 474 aa9.93□□□□□ -0.82
NUP54-215ENST00000514313 TIMM13Q9Y5L4 95 aaPredicted RBP9.93□□□□□ -0.82
NUP54-215ENST00000514313 GABRDO14764 452 aa9.92□□□□□ -0.82
NUP54-215ENST00000514313 TSPAN6O43657 245 aa9.92□□□□□ -0.82
NUP54-215ENST00000514313 TBC1D8O95759 1140 aa9.92□□□□□ -0.82
NUP54-215ENST00000514313 IGLV1-40P01703 118 aa9.92□□□□□ -0.82
NUP54-215ENST00000514313 RPL10P27635 214 aaKnown RBP9.92□□□□□ -0.82
NUP54-215ENST00000514313 BCL6P41182 706 aa9.92□□□□□ -0.82
NUP54-215ENST00000514313 ST5P78524 1137 aa9.92□□□□□ -0.82
NUP54-215ENST00000514313 LSAMPQ13449 338 aa9.92□□□□□ -0.82
NUP54-215ENST00000514313 PPP2R5AQ15172 486 aa9.92□□□□□ -0.82
NUP54-215ENST00000514313 LRRC41Q15345 812 aa9.92□□□□□ -0.82
NUP54-215ENST00000514313 CPSF6Q16630 551 aaKnown RBP eCLIP9.92□□□□□ -0.82
NUP54-215ENST00000514313 IFI16Q16666 785 aaKnown RBP9.92□□□□□ -0.82
NUP54-215ENST00000514313 NLRP10Q86W26 655 aa9.92□□□□□ -0.82
NUP54-215ENST00000514313 TMEM52Q8NDY8 209 aa9.92□□□□□ -0.82
NUP54-215ENST00000514313 CHAMP1Q96JM3 812 aa9.92□□□□□ -0.82
NUP54-215ENST00000514313 CDIP1Q9H305 208 aa9.92□□□□□ -0.82
NUP54-215ENST00000514313 EMC7Q9NPA0 242 aa9.92□□□□□ -0.82
NUP54-215ENST00000514313 SPTLC3Q9NUV7 552 aa9.92□□□□□ -0.82
NUP54-215ENST00000514313 SLC52A1Q9NWF4 448 aa9.92□□□□□ -0.82
NUP54-215ENST00000514313 PTPDC1A2A3K4 754 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 79.8 ms