RNA–Protein interactions for RNA: ENST00000465721.1

CNOT4-208, Transcript of CCR4-NOT transcription complex subunit 4, human

TSL 4

Gene CNOT4, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CNOT4-208	ENST00000465721	GTPBP6	O43824	516 aa	Predicted RBP	13.91	□□□□□ -0.18
CNOT4-208	ENST00000465721	ORC4	O43929	436 aa		13.91	□□□□□ -0.18
CNOT4-208	ENST00000465721	ACTN1	P12814	892 aa		13.91	□□□□□ -0.18
CNOT4-208	ENST00000465721	EDNRB	P24530	442 aa		13.91	□□□□□ -0.18
CNOT4-208	ENST00000465721	SLC16A2	P36021	539 aa		13.91	□□□□□ -0.18
CNOT4-208	ENST00000465721	SKIV2L	Q15477	1246 aa	Known RBP	13.91	□□□□□ -0.18
CNOT4-208	ENST00000465721	NBPF20	Q3BBV1	942 aa		13.91	□□□□□ -0.18
CNOT4-208	ENST00000465721	SYDE2	Q5VT97	1194 aa		13.91	□□□□□ -0.18
CNOT4-208	ENST00000465721	NFRKB	Q6P4R8	1299 aa		13.91	□□□□□ -0.18
CNOT4-208	ENST00000465721	HERC6	Q8IVU3	1022 aa		13.91	□□□□□ -0.18
CNOT4-208	ENST00000465721	PHOSPHO2	Q8TCD6	241 aa		13.91	□□□□□ -0.18
CNOT4-208	ENST00000465721	CLEC4D	Q8WXI8	215 aa		13.91	□□□□□ -0.18
CNOT4-208	ENST00000465721	FAM122A	Q96E09	287 aa		13.91	□□□□□ -0.18
CNOT4-208	ENST00000465721	ANAPC4	Q9UJX5	808 aa		13.91	□□□□□ -0.18
CNOT4-208	ENST00000465721	MYO7A	Q13402	2215 aa		13.91	□□□□□ -0.18
CNOT4-208	ENST00000465721	PTPDC1	A2A3K4	754 aa		13.9	□□□□□ -0.18
CNOT4-208	ENST00000465721		A6NJR5	290 aa		13.9	□□□□□ -0.18
CNOT4-208	ENST00000465721	FGR	P09769	529 aa		13.9	□□□□□ -0.18
CNOT4-208	ENST00000465721	IQCF3	P0C7M6	154 aa		13.9	□□□□□ -0.18
CNOT4-208	ENST00000465721	PPP2R5B	Q15173	497 aa		13.9	□□□□□ -0.18
CNOT4-208	ENST00000465721	FAM47C	Q5HY64	1035 aa		13.9	□□□□□ -0.18
CNOT4-208	ENST00000465721	ARNTL2	Q8WYA1	636 aa		13.9	□□□□□ -0.18
CNOT4-208	ENST00000465721	COPS5	Q92905	334 aa		13.9	□□□□□ -0.18
CNOT4-208	ENST00000465721	COG5	Q9UP83	839 aa		13.9	□□□□□ -0.18
CNOT4-208	ENST00000465721	C5orf42	Q9H799	3197 aa		13.9	□□□□□ -0.18
CNOT4-208	ENST00000465721	FRMPD2	Q68DX3	1309 aa	Predicted RBP	13.9	□□□□□ -0.19
CNOT4-208	ENST00000465721	RAD50	Q92878	1312 aa		13.9	□□□□□ -0.19
CNOT4-208	ENST00000465721	WDFY4	Q6ZS81	3184 aa		13.89	□□□□□ -0.19
CNOT4-208	ENST00000465721	NKRF	O15226	690 aa	Known RBP eCLIP	13.89	□□□□□ -0.19
CNOT4-208	ENST00000465721	TLL1	O43897	1013 aa		13.89	□□□□□ -0.19
CNOT4-208	ENST00000465721	RANBP6	O60518	1105 aa	Known RBP	13.89	□□□□□ -0.19
CNOT4-208	ENST00000465721	LPXN	O60711	386 aa		13.89	□□□□□ -0.19
CNOT4-208	ENST00000465721	BAIAP3	O94812	1187 aa		13.89	□□□□□ -0.19
CNOT4-208	ENST00000465721	CALML3	P27482	149 aa		13.89	□□□□□ -0.19
CNOT4-208	ENST00000465721	RPS6	P62753	249 aa	Known RBP	13.89	□□□□□ -0.19
CNOT4-208	ENST00000465721	PTPN11	Q06124	597 aa	Predicted RBP	13.89	□□□□□ -0.19
CNOT4-208	ENST00000465721	GRB10	Q13322	594 aa		13.89	□□□□□ -0.19
CNOT4-208	ENST00000465721	VPS53	Q5VIR6	699 aa		13.89	□□□□□ -0.19
CNOT4-208	ENST00000465721	CTAGE1	Q96RT6	745 aa		13.89	□□□□□ -0.19
CNOT4-208	ENST00000465721	GPHN	Q9NQX3	736 aa	Predicted RBP	13.89	□□□□□ -0.19
CNOT4-208	ENST00000465721	WDR19	Q8NEZ3	1342 aa		13.89	□□□□□ -0.19
CNOT4-208	ENST00000465721	SALL3	Q9BXA9	1300 aa		13.89	□□□□□ -0.19
CNOT4-208	ENST00000465721	LCHN	A4D1U4	455 aa		13.88	□□□□□ -0.19
CNOT4-208	ENST00000465721	ARIH2	O95376	493 aa		13.88	□□□□□ -0.19
CNOT4-208	ENST00000465721	PDE4D	Q08499	809 aa		13.88	□□□□□ -0.19
CNOT4-208	ENST00000465721	BRDT	Q58F21	947 aa	Predicted RBP	13.88	□□□□□ -0.19
CNOT4-208	ENST00000465721	RNF207	Q6ZRF8	634 aa		13.88	□□□□□ -0.19
CNOT4-208	ENST00000465721	SCFD2	Q8WU76	684 aa		13.88	□□□□□ -0.19
CNOT4-208	ENST00000465721	TMEM47	Q9BQJ4	181 aa		13.88	□□□□□ -0.19
CNOT4-208	ENST00000465721	LRFN3	Q9BTN0	628 aa		13.88	□□□□□ -0.19
CNOT4-208	ENST00000465721	EPHX3	Q9H6B9	360 aa		13.88	□□□□□ -0.19
CNOT4-208	ENST00000465721	GPCPD1	Q9NPB8	672 aa		13.88	□□□□□ -0.19
CNOT4-208	ENST00000465721	RALGAPA2	Q2PPJ7	1873 aa		13.87	□□□□□ -0.19
CNOT4-208	ENST00000465721	DOCK5	Q9H7D0	1870 aa		13.87	□□□□□ -0.19
CNOT4-208	ENST00000465721	KPNA6	O60684	536 aa		13.87	□□□□□ -0.19
CNOT4-208	ENST00000465721	PDHB	P11177	359 aa		13.87	□□□□□ -0.19
CNOT4-208	ENST00000465721	TOP1	P11387	765 aa	Known RBP	13.87	□□□□□ -0.19
CNOT4-208	ENST00000465721	WDR5	P61964	334 aa	Known RBP	13.87	□□□□□ -0.19
CNOT4-208	ENST00000465721	BFSP2	Q13515	415 aa		13.87	□□□□□ -0.19
CNOT4-208	ENST00000465721	GPNMB	Q14956	572 aa		13.87	□□□□□ -0.19
CNOT4-208	ENST00000465721	RETREG2	Q8NC44	543 aa		13.87	□□□□□ -0.19
CNOT4-208	ENST00000465721	DNER	Q8NFT8	737 aa		13.87	□□□□□ -0.19
CNOT4-208	ENST00000465721	KHSRP	Q92945	711 aa	Known RBP eCLIP	13.87	□□□□□ -0.19	1e-6	■■■□□ 18.9
CNOT4-208	ENST00000465721	FTO	Q9C0B1	505 aa	Known RBP eCLIP	13.87	□□□□□ -0.19
CNOT4-208	ENST00000465721	ZNF318	Q5VUA4	2279 aa		13.87	□□□□□ -0.19
CNOT4-208	ENST00000465721	KIF28P	B7ZC32	967 aa		13.86	□□□□□ -0.19
CNOT4-208	ENST00000465721	SNHG28	P0DPA3	235 aa		13.86	□□□□□ -0.19
CNOT4-208	ENST00000465721	TXN	P10599	105 aa	Known RBP	13.86	□□□□□ -0.19
CNOT4-208	ENST00000465721	MX1	P20591	662 aa		13.86	□□□□□ -0.19
CNOT4-208	ENST00000465721	RBL2	Q08999	1139 aa		13.86	□□□□□ -0.19
CNOT4-208	ENST00000465721	ZNF543	Q08ER8	600 aa		13.86	□□□□□ -0.19
CNOT4-208	ENST00000465721	ALX1	Q15699	326 aa		13.86	□□□□□ -0.19
CNOT4-208	ENST00000465721	TMCO2	Q7Z6W1	182 aa	Predicted RBP	13.86	□□□□□ -0.19
CNOT4-208	ENST00000465721	SESTD1	Q86VW0	696 aa		13.86	□□□□□ -0.19
CNOT4-208	ENST00000465721	CAGE1	Q8TC20	777 aa		13.86	□□□□□ -0.19
CNOT4-208	ENST00000465721	AFAP1L1	Q8TED9	768 aa		13.86	□□□□□ -0.19
CNOT4-208	ENST00000465721	GDPD5	Q8WTR4	605 aa		13.86	□□□□□ -0.19
CNOT4-208	ENST00000465721	DHX38	Q92620	1227 aa	Known RBP	13.86	□□□□□ -0.19
CNOT4-208	ENST00000465721	HLA-C	Q95604	372 aa		13.86	□□□□□ -0.19
CNOT4-208	ENST00000465721	C11orf16	Q9NQ32	467 aa		13.86	□□□□□ -0.19
CNOT4-208	ENST00000465721	TCP11L1	Q9NUJ3	509 aa		13.86	□□□□□ -0.19
CNOT4-208	ENST00000465721	ARIH1	Q9Y4X5	557 aa	Predicted RBP	13.86	□□□□□ -0.19
CNOT4-208	ENST00000465721	MMP3	P08254	477 aa		13.85	□□□□□ -0.19
CNOT4-208	ENST00000465721	KCNJ6	P48051	423 aa		13.85	□□□□□ -0.19
CNOT4-208	ENST00000465721	DEFB103A	P81534	67 aa		13.85	□□□□□ -0.19
CNOT4-208	ENST00000465721	PTGIS	Q16647	500 aa		13.85	□□□□□ -0.19
CNOT4-208	ENST00000465721	TCTN1	Q2MV58	587 aa		13.85	□□□□□ -0.19
CNOT4-208	ENST00000465721	GDF6	Q6KF10	455 aa	Predicted RBP	13.85	□□□□□ -0.19
CNOT4-208	ENST00000465721	CCDC62	Q6P9F0	684 aa		13.85	□□□□□ -0.19
CNOT4-208	ENST00000465721	CCDC155	Q8N6L0	562 aa		13.85	□□□□□ -0.19
CNOT4-208	ENST00000465721	MPHOSPH6	Q99547	160 aa	Known RBP	13.85	□□□□□ -0.19
CNOT4-208	ENST00000465721	PNMA2	Q9UL42	364 aa		13.85	□□□□□ -0.19
CNOT4-208	ENST00000465721	NOD1	Q9Y239	953 aa		13.85	□□□□□ -0.19
CNOT4-208	ENST00000465721	ZMYM6	O95789	1325 aa		13.85	□□□□□ -0.19
CNOT4-208	ENST00000465721	KAT6A	Q92794	2004 aa		13.85	□□□□□ -0.19
CNOT4-208	ENST00000465721	BAZ2B	Q9UIF8	2168 aa	Known RBP	13.84	□□□□□ -0.19
CNOT4-208	ENST00000465721	RBAK-RBAKDN	I3L0D1	243 aa		13.84	□□□□□ -0.19
CNOT4-208	ENST00000465721	CXCL10	P02778	98 aa		13.84	□□□□□ -0.19
CNOT4-208	ENST00000465721	ARHGAP1	Q07960	439 aa		13.84	□□□□□ -0.19
CNOT4-208	ENST00000465721	RRP12	Q5JTH9	1297 aa	Known RBP	13.84	□□□□□ -0.19

Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms