RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 A0A1W2PQC6 194 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 A0A1W2PQD8 194 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 ALDH1L1O75891 902 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 KRT18P05783 430 aaKnown RBP5.28□□□□□ -1.56
HMGB1-204ENST00000399489 NME1P15531 152 aaKnown RBP5.28□□□□□ -1.56
HMGB1-204ENST00000399489 BMP7P18075 431 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 POLR2BP30876 1174 aaKnown RBP5.28□□□□□ -1.56
HMGB1-204ENST00000399489 TTF1Q15361 905 aaPredicted RBP5.28□□□□□ -1.56
HMGB1-204ENST00000399489 SYCP2LQ5T4T6 812 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 ERICH6BQ5W0A0 696 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 CELF2-AS1Q8N7Q2 184 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 DSCC1Q9BVC3 393 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 CDADC1Q9BWV3 514 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 CHST12Q9NRB3 414 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 PRR13Q9NZ81 148 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 SASH1O94885 1247 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 IMPDH2P12268 514 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 CLCQ05315 142 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 PPP2R5AQ15172 486 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 BBS9Q3SYG4 887 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 C2orf27AQ580R0 203 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 DALRD3Q5D0E6 543 aaKnown RBP5.28□□□□□ -1.56
HMGB1-204ENST00000399489 CWF19L1Q69YN2 538 aaKnown RBP5.28□□□□□ -1.56
HMGB1-204ENST00000399489 NT5C1AQ9BXI3 368 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 GCM1Q9NP62 436 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 UBP1Q9NZI7 540 aa5.28□□□□□ -1.56
HMGB1-204ENST00000399489 R3HCC1Q9Y3T6 440 aaKnown RBP5.28□□□□□ -1.56
HMGB1-204ENST00000399489 A0A1W2PQ45 241 aaPredicted RBP5.27□□□□□ -1.57
HMGB1-204ENST00000399489 A0A1W2PQY0 241 aa5.27□□□□□ -1.57
HMGB1-204ENST00000399489 TMEM82A0PJX8 343 aa5.27□□□□□ -1.57
HMGB1-204ENST00000399489 OVOL3O00110 214 aa5.27□□□□□ -1.57
HMGB1-204ENST00000399489 MEIS1O00470 390 aa5.27□□□□□ -1.57
HMGB1-204ENST00000399489 GSNP06396 782 aa5.27□□□□□ -1.57
HMGB1-204ENST00000399489 HOXA5P20719 270 aa5.27□□□□□ -1.57
HMGB1-204ENST00000399489 BMP8BP34820 402 aa5.27□□□□□ -1.57
HMGB1-204ENST00000399489 IFRD2Q12894 506 aaPredicted RBP5.27□□□□□ -1.57
HMGB1-204ENST00000399489 SNW1Q13573 536 aaKnown RBP5.27□□□□□ -1.57
HMGB1-204ENST00000399489 COL9A2Q14055 689 aaPredicted RBP5.27□□□□□ -1.57
HMGB1-204ENST00000399489 BRD3Q15059 726 aa5.27□□□□□ -1.57
HMGB1-204ENST00000399489 DDR2Q16832 855 aa5.27□□□□□ -1.57
HMGB1-204ENST00000399489 NAT16Q8N8M0 369 aa5.27□□□□□ -1.57
HMGB1-204ENST00000399489 ANAPC16Q96DE5 110 aa5.27□□□□□ -1.57
HMGB1-204ENST00000399489 EAF1Q96JC9 268 aaPredicted RBP5.27□□□□□ -1.57
HMGB1-204ENST00000399489 SLC6A18Q96N87 628 aa5.27□□□□□ -1.57
HMGB1-204ENST00000399489 GFOD1Q9NXC2 390 aa5.27□□□□□ -1.57
HMGB1-204ENST00000399489 SWAP70Q9UH65 585 aa5.27□□□□□ -1.57
HMGB1-204ENST00000399489 MBD1Q9UIS9 605 aaPredicted RBP5.27□□□□□ -1.57
HMGB1-204ENST00000399489 GPR55Q9Y2T6 319 aaPredicted RBP5.27□□□□□ -1.57
HMGB1-204ENST00000399489 MEIS3P2A8K0S8 358 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 NOTOA8MTQ0 251 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 FADS2P1A8MWK0 482 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 EXOC5O00471 708 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 TNFRSF10CO14798 259 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 N4BP3O15049 544 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 SCGB1D2O95969 90 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 FGAP02671 866 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 MYL1P05976 194 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 PI3P19957 117 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 CNGA1P29973 690 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 VIPR1P32241 457 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 CRKP46108 304 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 ERVFRD-1P60508 538 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 YBX1P67809 324 aaKnown RBP5.26□□□□□ -1.57
HMGB1-204ENST00000399489 CYP4F8P98187 520 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 POU5F1BQ06416 359 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 RASGRF1Q13972 1273 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 LRRC41Q15345 812 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 HSF5Q4G112 596 aaPredicted RBP5.26□□□□□ -1.57
HMGB1-204ENST00000399489 AMOTL1Q8IY63 956 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 CCDC144CPQ8IYA2 1237 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 SMARCC1Q92922 1105 aaPredicted RBP5.26□□□□□ -1.57
HMGB1-204ENST00000399489 ARPC5LQ9BPX5 153 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 FBXO9Q9UK97 447 aaPredicted RBP5.26□□□□□ -1.57
HMGB1-204ENST00000399489 PLAAQ9Y263 795 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 PDPK1O15530 556 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 ZNF205O95201 554 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 FOSP01100 380 aaPredicted RBP5.26□□□□□ -1.57
HMGB1-204ENST00000399489 PMLP29590 882 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 AFF3P51826 1226 aaKnown RBP5.26□□□□□ -1.57
HMGB1-204ENST00000399489 AUHQ13825 339 aaKnown RBP5.26□□□□□ -1.57
HMGB1-204ENST00000399489 RAB3GAP1Q15042 981 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 TCEA2Q15560 299 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 ZPBP2Q6X784 338 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 PCGF5Q86SE9 256 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 SLITRK4Q8IW52 837 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 NUP43Q8NFH3 380 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 SHDQ96IW2 340 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 ZNF700Q9H0M5 742 aa5.26□□□□□ -1.57
HMGB1-204ENST00000399489 A0A1W2PQJ5 194 aa5.25□□□□□ -1.57
HMGB1-204ENST00000399489 ALG1L2C9J202 215 aa5.25□□□□□ -1.57
HMGB1-204ENST00000399489 SMAD7O15105 426 aaKnown RBP5.25□□□□□ -1.57
HMGB1-204ENST00000399489 PRKCAP17252 672 aa5.25□□□□□ -1.57
HMGB1-204ENST00000399489 CD53P19397 219 aa5.25□□□□□ -1.57
HMGB1-204ENST00000399489 STAT3P40763 770 aa5.25□□□□□ -1.57
HMGB1-204ENST00000399489 MCL1Q07820 350 aa5.25□□□□□ -1.57
HMGB1-204ENST00000399489 LMOD3Q0VAK6 560 aa5.25□□□□□ -1.57
HMGB1-204ENST00000399489 SSPNQ14714 243 aa5.25□□□□□ -1.57
HMGB1-204ENST00000399489 TNNI3KQ59H18 835 aa5.25□□□□□ -1.57
HMGB1-204ENST00000399489 HLA-DQA1Q5Y7H0 255 aa5.25□□□□□ -1.57
HMGB1-204ENST00000399489 INTS3Q68E01 1043 aaKnown RBP5.25□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms