RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 MTDHQ86UE4 582 aaKnown RBP4.86□□□□□ -1.63
HMGB1-201ENST00000326004 NLRX1Q86UT6 975 aa4.86□□□□□ -1.63
HMGB1-201ENST00000326004 Q8N1Y9 231 aa4.86□□□□□ -1.63
HMGB1-201ENST00000326004 NUP43Q8NFH3 380 aa4.86□□□□□ -1.63
HMGB1-201ENST00000326004 SLC7A14Q8TBB6 771 aa4.86□□□□□ -1.63
HMGB1-201ENST00000326004 MAGEB10Q96LZ2 347 aaPredicted RBP4.86□□□□□ -1.63
HMGB1-201ENST00000326004 ALG1Q9BT22 464 aa4.86□□□□□ -1.63
HMGB1-201ENST00000326004 CRTAC1Q9NQ79 661 aa4.86□□□□□ -1.63
HMGB1-201ENST00000326004 PDLIM7Q9NR12 457 aa4.86□□□□□ -1.63
HMGB1-201ENST00000326004 INTS7Q9NVH2 962 aaKnown RBP4.86□□□□□ -1.63
HMGB1-201ENST00000326004 IMPACTQ9P2X3 320 aa4.86□□□□□ -1.63
HMGB1-201ENST00000326004 MAGEC2Q9UBF1 373 aaPredicted RBP4.86□□□□□ -1.63
HMGB1-201ENST00000326004 TRAF6Q9Y4K3 522 aa4.86□□□□□ -1.63
HMGB1-201ENST00000326004 PCDHA2Q9Y5H9 948 aa4.86□□□□□ -1.63
HMGB1-201ENST00000326004 OAS3Q9Y6K5 1087 aaKnown RBP4.86□□□□□ -1.63
HMGB1-201ENST00000326004 BIN1O00499 593 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 PSPNO60542 156 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 MSCO60682 206 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 PNLIPP16233 465 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 PRKCAP17252 672 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 ARL4AP40617 200 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 BCL6P41182 706 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 GYS2P54840 703 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 GUCY1A3Q02108 690 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 MVKQ03426 396 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 NIM1KQ8IY84 436 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 LZTR1Q8N653 840 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 ABHD4Q8TB40 342 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 DPF3Q92784 378 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 MFSD3Q96ES6 412 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 TMEM169Q96HH4 297 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 CHAMP1Q96JM3 812 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 CLUHP3Q96NS8 147 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 PLCD4Q9BRC7 762 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 GULP1Q9UBP9 304 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 GPR160Q9UJ42 338 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 SBNO2Q9Y2G9 1366 aa4.85□□□□□ -1.63
HMGB1-201ENST00000326004 A0A1W2PQJ5 194 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 B4E1Z4 1266 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 FAM47E-STBD1D6RA91 191 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 ARVCFO00192 962 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 CRTAMO95727 393 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 ASLP04424 464 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 GRK2P25098 689 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 GRK3P35626 688 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 CYP4F8P98187 520 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 PAK1Q13153 545 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 TIGD5Q53EQ6 642 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 TM4SF20Q53R12 229 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 CEP68Q76N32 757 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 CABP7Q86V35 215 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 RIOX2Q8IUF8 465 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 SHISA4Q96DD7 197 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 KIRREL1Q96J84 757 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 MTA3Q9BTC8 594 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 C19orf44Q9H6X5 657 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 CLDND1Q9NY35 253 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 MARCH2Q9P0N8 246 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 WDR3Q9UNX4 943 aaKnown RBP eCLIP4.84□□□□□ -1.63
HMGB1-201ENST00000326004 COA3Q9Y2R0 106 aaPredicted RBP4.84□□□□□ -1.63
HMGB1-201ENST00000326004 RWDD3Q9Y3V2 267 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 X6R8D5 127 aa4.84□□□□□ -1.63
HMGB1-201ENST00000326004 TCRBV16S1A1N1A0A5B0 115 aa4.83□□□□□ -1.64
HMGB1-201ENST00000326004 WNT9AO14904 365 aa4.83□□□□□ -1.64
HMGB1-201ENST00000326004 DNAJC8O75937 253 aaPredicted RBP4.83□□□□□ -1.64
HMGB1-201ENST00000326004 NPTXRO95502 500 aa4.83□□□□□ -1.64
HMGB1-201ENST00000326004 SOD2P04179 222 aa4.83□□□□□ -1.64
HMGB1-201ENST00000326004 TRHRP34981 398 aaPredicted RBP4.83□□□□□ -1.64
HMGB1-201ENST00000326004 IGFALSP35858 605 aa4.83□□□□□ -1.64
HMGB1-201ENST00000326004 FLT3P36888 993 aa4.83□□□□□ -1.64
HMGB1-201ENST00000326004 RNF187Q5TA31 235 aaPredicted RBP4.83□□□□□ -1.64
HMGB1-201ENST00000326004 MROH9Q5TGP6 573 aa4.83□□□□□ -1.64
HMGB1-201ENST00000326004 FGD2Q7Z6J4 655 aa4.83□□□□□ -1.64
HMGB1-201ENST00000326004 NLRP10Q86W26 655 aa4.83□□□□□ -1.64
HMGB1-201ENST00000326004 Q8N3U1 123 aa4.83□□□□□ -1.64
HMGB1-201ENST00000326004 PLEKHO2Q8TD55 490 aa4.83□□□□□ -1.64
HMGB1-201ENST00000326004 PANK1Q8TE04 598 aa4.83□□□□□ -1.64
HMGB1-201ENST00000326004 USP33Q8TEY7 942 aa4.83□□□□□ -1.64
HMGB1-201ENST00000326004 TRMT2BQ96GJ1 504 aaKnown RBP4.83□□□□□ -1.64
HMGB1-201ENST00000326004 SCLYQ96I15 445 aa4.83□□□□□ -1.64
HMGB1-201ENST00000326004 BTG4Q9NY30 223 aa4.83□□□□□ -1.64
HMGB1-201ENST00000326004 FBXL7Q9UJT9 491 aa4.83□□□□□ -1.64
HMGB1-201ENST00000326004 YBX2Q9Y2T7 364 aaKnown RBP4.83□□□□□ -1.64
HMGB1-201ENST00000326004 PCDHA9Q9Y5H5 950 aa4.83□□□□□ -1.64
HMGB1-201ENST00000326004 PCDHA8Q9Y5H6 950 aa4.83□□□□□ -1.64
HMGB1-201ENST00000326004 C22orf46C9J442 243 aa4.82□□□□□ -1.64
HMGB1-201ENST00000326004 IRS4O14654 1257 aaPredicted RBP4.82□□□□□ -1.64
HMGB1-201ENST00000326004 GSTA4O15217 222 aa4.82□□□□□ -1.64
HMGB1-201ENST00000326004 SRGAP3O43295 1099 aa4.82□□□□□ -1.64
HMGB1-201ENST00000326004 OPA1O60313 960 aa4.82□□□□□ -1.64
HMGB1-201ENST00000326004 PPP1R11O60927 126 aaPredicted RBP4.82□□□□□ -1.64
HMGB1-201ENST00000326004 RASGRP1O95267 797 aa4.82□□□□□ -1.64
HMGB1-201ENST00000326004 EFEMP2O95967 443 aa4.82□□□□□ -1.64
HMGB1-201ENST00000326004 FUCA1P04066 466 aa4.82□□□□□ -1.64
HMGB1-201ENST00000326004 MSL3P1P0C860 447 aa4.82□□□□□ -1.64
HMGB1-201ENST00000326004 JUNBP17275 347 aaPredicted RBP4.82□□□□□ -1.64
HMGB1-201ENST00000326004 SDSP20132 328 aa4.82□□□□□ -1.64
HMGB1-201ENST00000326004 C21orf62-AS1Q17RA5 79 aa4.82□□□□□ -1.64
HMGB1-201ENST00000326004 FAM47CQ5HY64 1035 aa4.82□□□□□ -1.64
HMGB1-201ENST00000326004 TEX2Q8IWB9 1127 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 198.8 ms