RNA–Protein interactions for RNA: YDR136C

VPS61, Transcript of Dubious open reading frame, yeastyeast

Gene VPS61, Length 573 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS61YDR136C CST9Q06032 482 aa8.28□□□□□ -1.08
VPS61YDR136C NUP188P52593 1655 aaKnown RBP8.27□□□□□ -1.09
VPS61YDR136C DOP1Q03921 1698 aa8.27□□□□□ -1.09
VPS61YDR136C TIF4632P39936 914 aaKnown RBP8.26□□□□□ -1.09
VPS61YDR136C BNR1P40450 1375 aa8.25□□□□□ -1.09
VPS61YDR136C IML1P47170 1584 aa8.23□□□□□ -1.09
VPS61YDR136C PDR11P40550 1411 aa8.23□□□□□ -1.09
VPS61YDR136C NUP192P47054 1683 aa8.23□□□□□ -1.09
VPS61YDR136C TRM3Q07527 1436 aa8.22□□□□□ -1.09
VPS61YDR136C RTC1Q08281 1341 aa8.22□□□□□ -1.09
VPS61YDR136C LEU3P08638 886 aa8.2□□□□□ -1.1
VPS61YDR136C MRM1P25270 412 aa8.18□□□□□ -1.1
VPS61YDR136C DNF2Q12675 1612 aa8.17□□□□□ -1.1
VPS61YDR136C DRS2P39524 1355 aa8.16□□□□□ -1.1
VPS61YDR136C TGL3P40308 642 aa8.16□□□□□ -1.1
VPS61YDR136C PDS5Q04264 1277 aa8.15□□□□□ -1.1
VPS61YDR136C ORC1P54784 914 aaPredicted RBP8.14□□□□□ -1.11
VPS61YDR136C MLP1Q02455 1875 aaKnown RBP8.13□□□□□ -1.11
VPS61YDR136C TAF5P38129 798 aa8.11□□□□□ -1.11
VPS61YDR136C ESL2P36168 1195 aa8.1□□□□□ -1.11
VPS61YDR136C RTG3P38165 486 aa8.09□□□□□ -1.11
VPS61YDR136C KIP3P53086 805 aaKnown RBP8.09□□□□□ -1.11
VPS61YDR136C CFT1Q06632 1357 aaKnown RBP8.09□□□□□ -1.12
VPS61YDR136C NST1P53935 1240 aa8.08□□□□□ -1.12
VPS61YDR136C SNF2P22082 1703 aa8.07□□□□□ -1.12
VPS61YDR136C SCT1P32784 759 aa8.07□□□□□ -1.12
VPS61YDR136C DMA1P38823 416 aa8.07□□□□□ -1.12
VPS61YDR136C RPP0P05317 312 aaKnown RBP8.04□□□□□ -1.12
VPS61YDR136C BCK1Q01389 1478 aa8.04□□□□□ -1.12
VPS61YDR136C SPE2P21182 396 aa8.02□□□□□ -1.13
VPS61YDR136C IOC4Q04213 475 aa8.01□□□□□ -1.13
VPS61YDR136C CDC45Q08032 650 aa8.01□□□□□ -1.13
VPS61YDR136C RCR1P38212 213 aa7.99□□□□□ -1.13
VPS61YDR136C VPS27P40343 622 aaKnown RBP7.99□□□□□ -1.13
VPS61YDR136C YAP5P40574 245 aa7.99□□□□□ -1.13
VPS61YDR136C HAP1P0CE41 1502 aa7.98□□□□□ -1.13
VPS61YDR136C DNF3Q12674 1656 aa7.98□□□□□ -1.13
VPS61YDR136C RAM2P29703 316 aa7.97□□□□□ -1.13
VPS61YDR136C VPS29P38759 282 aa7.96□□□□□ -1.14
VPS61YDR136C YMR1P47147 688 aaKnown RBP RIP-Chip data7.96□□□□□ -1.14not detected
VPS61YDR136C YAP3P38749 330 aa7.95□□□□□ -1.14
VPS61YDR136C FKH1P40466 484 aa7.94□□□□□ -1.14
VPS61YDR136C YOR238WQ08634 303 aa7.94□□□□□ -1.14
VPS61YDR136C RVB2Q12464 471 aaKnown RBP7.94□□□□□ -1.14
VPS61YDR136C YML133CQ03099 1374 aa7.94□□□□□ -1.14
VPS61YDR136C YLL067CQ07888 1374 aa7.94□□□□□ -1.14
VPS61YDR136C YLL066CQ99208 1374 aa7.94□□□□□ -1.14
VPS61YDR136C YRB30P53107 440 aaPredicted RBP7.93□□□□□ -1.14
VPS61YDR136C RAD9P14737 1309 aa7.93□□□□□ -1.14
VPS61YDR136C BNI1P41832 1953 aa7.92□□□□□ -1.14
VPS61YDR136C YEF3P16521 1044 aaKnown RBP7.92□□□□□ -1.14
VPS61YDR136C MAK11P20484 414 aaKnown RBP7.92□□□□□ -1.14
VPS61YDR136C FUN12P39730 1002 aaKnown RBP7.92□□□□□ -1.14
VPS61YDR136C YDL144CQ07589 356 aa7.92□□□□□ -1.14
VPS61YDR136C TYS1P36421 394 aaKnown RBP7.91□□□□□ -1.14
VPS61YDR136C IPL1P38991 367 aa7.91□□□□□ -1.14
VPS61YDR136C ALD4P46367 519 aaKnown RBP7.91□□□□□ -1.14
VPS61YDR136C TAF8Q03750 510 aa7.91□□□□□ -1.14
VPS61YDR136C TRK1P12685 1235 aa7.9□□□□□ -1.14
VPS61YDR136C RPC31P17890 251 aa7.9□□□□□ -1.14
VPS61YDR136C MST1P07236 462 aa7.88□□□□□ -1.15
VPS61YDR136C SUI2P20459 304 aaKnown RBP7.88□□□□□ -1.15
VPS61YDR136C DBP1P24784 617 aaKnown RBP7.88□□□□□ -1.15
VPS61YDR136C URN1Q06525 465 aaKnown RBP7.88□□□□□ -1.15
VPS61YDR136C TY1B-NL2Q99337 1749 aaKnown RBP7.87□□□□□ -1.15
VPS61YDR136C IME2P32581 645 aa7.87□□□□□ -1.15
VPS61YDR136C FPR3P38911 411 aaKnown RBP7.87□□□□□ -1.15
VPS61YDR136C CHZ1P40019 153 aaPredicted RBP7.87□□□□□ -1.15
VPS61YDR136C USO1P25386 1790 aa7.87□□□□□ -1.15
VPS61YDR136C NAP1P25293 417 aaKnown RBP7.86□□□□□ -1.15
VPS61YDR136C OPY1P38271 328 aa7.86□□□□□ -1.15
VPS61YDR136C STS1P38637 319 aa7.86□□□□□ -1.15
VPS61YDR136C PSK1P31374 1356 aa7.84□□□□□ -1.15
VPS61YDR136C YFR006WP43590 535 aa7.84□□□□□ -1.15
VPS61YDR136C MPP10P47083 593 aaKnown RBP7.84□□□□□ -1.15
VPS61YDR136C NAB6Q03735 1134 aaKnown RBP RIP-Chip data7.84□□□□□ -1.15not detected
VPS61YDR136C KRE5P22023 1365 aa7.84□□□□□ -1.16
VPS61YDR136C CAB1Q04430 367 aa7.83□□□□□ -1.16
VPS61YDR136C ABP1P15891 592 aaKnown RBP7.82□□□□□ -1.16
VPS61YDR136C PIB1Q06651 286 aa7.82□□□□□ -1.16
VPS61YDR136C YIR014WP40570 242 aa7.81□□□□□ -1.16
VPS61YDR136C RRP46P53256 223 aaPredicted RBP7.81□□□□□ -1.16
VPS61YDR136C SIR4P11978 1358 aa7.81□□□□□ -1.16
VPS61YDR136C SET1P38827 1080 aaKnown RBP7.8□□□□□ -1.16
VPS61YDR136C GTT3P39996 337 aa7.8□□□□□ -1.16
VPS61YDR136C YRF1-4O13559 1382 aa7.8□□□□□ -1.16
VPS61YDR136C RTR1P40084 226 aaPredicted RBP7.79□□□□□ -1.16
VPS61YDR136C COQ8P27697 501 aa7.78□□□□□ -1.16
VPS61YDR136C TAP42Q04372 366 aa7.78□□□□□ -1.16
VPS61YDR136C AUS1Q08409 1394 aa7.77□□□□□ -1.17
VPS61YDR136C CLC1P17891 233 aa7.77□□□□□ -1.17
VPS61YDR136C MIF2P35201 549 aa7.77□□□□□ -1.17
VPS61YDR136C EAF7P53911 425 aaKnown RBP7.77□□□□□ -1.17
VPS61YDR136C ITT1Q04638 464 aa7.77□□□□□ -1.17
VPS61YDR136C APC1P53886 1748 aa7.77□□□□□ -1.17
VPS61YDR136C RAD2P07276 1031 aa7.76□□□□□ -1.17
VPS61YDR136C KAR2P16474 682 aaKnown RBP7.76□□□□□ -1.17
VPS61YDR136C VMA1P17255 1071 aaKnown RBP7.76□□□□□ -1.17
VPS61YDR136C BUD27P43573 796 aaKnown RBP RIP-Chip data7.76□□□□□ -1.17not detected
VPS61YDR136C YFR016CP43597 1233 aaKnown RBP7.76□□□□□ -1.17
Retrieved 100 of 5,963 RNA–protein pairs in 138.4 ms