RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 SCAPERQ9BY12 1400 aa24.57■■□□□ 1.52
PNKP-218ENST00000625299 ATP1B4Q9UN42 357 aaPredicted RBP24.56■■□□□ 1.52
PNKP-218ENST00000625299 EHMT2Q96KQ7 1210 aa24.54■■□□□ 1.52
PNKP-218ENST00000625299 PLCH2O75038 1416 aa24.53■■□□□ 1.52
PNKP-218ENST00000625299 MYO5CQ9NQX4 1742 aa24.51■■□□□ 1.51
PNKP-218ENST00000625299 ATP10AO60312 1499 aa24.48■■□□□ 1.51
PNKP-218ENST00000625299 C9orf84Q5VXU9 1444 aa24.48■■□□□ 1.51
PNKP-218ENST00000625299 CERKQ8TCT0 537 aa24.47■■□□□ 1.51
PNKP-218ENST00000625299 ARHGEF12Q9NZN5 1544 aa24.46■■□□□ 1.51
PNKP-218ENST00000625299 EFCAB2Q5VUJ9 269 aa24.45■■□□□ 1.5
PNKP-218ENST00000625299 PREX1Q8TCU6 1659 aa24.45■■□□□ 1.5
PNKP-218ENST00000625299 KIF14Q15058 1648 aa24.45■■□□□ 1.5
PNKP-218ENST00000625299 UBTFP17480 764 aaKnown RBP24.44■■□□□ 1.5
PNKP-218ENST00000625299 FMN1Q68DA7 1419 aa24.44■■□□□ 1.5
PNKP-218ENST00000625299 CEBPAP49715 358 aaPredicted RBP24.42■■□□□ 1.5
PNKP-218ENST00000625299 MYT1LQ9UL68 1186 aa24.42■■□□□ 1.5
PNKP-218ENST00000625299 ARHGAP5Q13017 1502 aa24.41■■□□□ 1.5
PNKP-218ENST00000625299 CDK11AQ9UQ88 783 aaPredicted RBP24.41■■□□□ 1.5
PNKP-218ENST00000625299 ZNF518AQ6AHZ1 1483 aa24.39■■□□□ 1.5
PNKP-218ENST00000625299 ARHGAP35Q9NRY4 1499 aa24.38■■□□□ 1.49
PNKP-218ENST00000625299 TROQ12816 1431 aaPredicted RBP24.35■■□□□ 1.49
PNKP-218ENST00000625299 AFAP1Q8N556 730 aa24.35■■□□□ 1.49
PNKP-218ENST00000625299 CLIP1P30622 1438 aa24.35■■□□□ 1.49
PNKP-218ENST00000625299 KDM5CP41229 1560 aa24.34■■□□□ 1.49
PNKP-218ENST00000625299 UHRF1BP1Q6BDS2 1440 aa24.33■■□□□ 1.49
PNKP-218ENST00000625299 DIP2CQ9Y2E4 1556 aa24.33■■□□□ 1.48
PNKP-218ENST00000625299 LRRIQ1Q96JM4 1722 aa24.32■■□□□ 1.48
PNKP-218ENST00000625299 STRCQ7RTU9 1775 aa24.31■■□□□ 1.48
PNKP-218ENST00000625299 ABCA6Q8N139 1617 aa24.29■■□□□ 1.48
PNKP-218ENST00000625299 CDC42BPBQ9Y5S2 1711 aa24.28■■□□□ 1.48
PNKP-218ENST00000625299 DMRT2Q9Y5R5 561 aa24.28■■□□□ 1.48
PNKP-218ENST00000625299 SETD1BQ9UPS6 1966 aaKnown RBP24.26■■□□□ 1.47
PNKP-218ENST00000625299 C3P01024 1663 aa24.26■■□□□ 1.47
PNKP-218ENST00000625299 REREQ9P2R6 1566 aa24.25■■□□□ 1.47
PNKP-218ENST00000625299 ESF1Q9H501 851 aaKnown RBP24.24■■□□□ 1.47
PNKP-218ENST00000625299 PREX2Q70Z35 1606 aa24.24■■□□□ 1.47
PNKP-218ENST00000625299 ABCC1P33527 1531 aa24.22■■□□□ 1.47
PNKP-218ENST00000625299 MLH3Q9UHC1 1453 aa24.22■■□□□ 1.47
PNKP-218ENST00000625299 ITSN2Q9NZM3 1697 aa24.21■■□□□ 1.47
PNKP-218ENST00000625299 TRAPPC8Q9Y2L5 1435 aa24.21■■□□□ 1.47
PNKP-218ENST00000625299 DISP3Q9P2K9 1392 aa24.21■■□□□ 1.47
PNKP-218ENST00000625299 AGLP35573 1532 aa24.17■■□□□ 1.46
PNKP-218ENST00000625299 CCDC18Q5T9S5 1454 aa24.16■■□□□ 1.46
PNKP-218ENST00000625299 KIDINS220Q9ULH0 1771 aa24.15■■□□□ 1.46
PNKP-218ENST00000625299 PTPRTO14522 1441 aa24.14■■□□□ 1.45
PNKP-218ENST00000625299 CDC42BPAQ5VT25 1732 aa24.14■■□□□ 1.45
PNKP-218ENST00000625299 CASKIN1Q8WXD9 1431 aa24.12■■□□□ 1.45
PNKP-218ENST00000625299 ILDR2Q71H61 639 aa24.11■■□□□ 1.45
PNKP-218ENST00000625299 ZNF777Q9ULD5 760 aaPredicted RBP24.1■■□□□ 1.45
PNKP-218ENST00000625299 CNTLNQ9NXG0 1405 aa24.1■■□□□ 1.45
PNKP-218ENST00000625299 CHIC1Q5VXU3 224 aa24.07■■□□□ 1.44
PNKP-218ENST00000625299 NCOA1Q15788 1441 aa24.07■■□□□ 1.44
PNKP-218ENST00000625299 SAMD9LQ8IVG5 1584 aa24.07■■□□□ 1.44
PNKP-218ENST00000625299 SPATA31D1Q6ZQQ2 1576 aa24.06■■□□□ 1.44
PNKP-218ENST00000625299 SUPT6HQ7KZ85 1726 aaKnown RBP24.06■■□□□ 1.44
PNKP-218ENST00000625299 LTBP4Q8N2S1 1624 aa24.06■■□□□ 1.44
PNKP-218ENST00000625299 SYCP2Q9BX26 1530 aa24.05■■□□□ 1.44
PNKP-218ENST00000625299 CAMSAP1Q5T5Y3 1602 aa24.04■■□□□ 1.44
PNKP-218ENST00000625299 MROH2AA6NES4 1674 aa24.04■■□□□ 1.44
PNKP-218ENST00000625299 FYCO1Q9BQS8 1478 aa24.02■■□□□ 1.44
PNKP-218ENST00000625299 SPAG9O60271 1321 aaKnown RBP24.02■■□□□ 1.44
PNKP-218ENST00000625299 SOCS7O14512 581 aa24■■□□□ 1.43
PNKP-218ENST00000625299 NPATQ14207 1427 aa24■■□□□ 1.43
PNKP-218ENST00000625299 CLTCQ00610 1675 aaKnown RBP23.99■■□□□ 1.43
PNKP-218ENST00000625299 HNRNPMP52272 730 aaKnown RBP eCLIP23.99■■□□□ 1.43
PNKP-218ENST00000625299 ZMYM3Q14202 1370 aa23.99■■□□□ 1.43
PNKP-218ENST00000625299 IQSEC2Q5JU85 1478 aa23.98■■□□□ 1.43
PNKP-218ENST00000625299 ATP7AQ04656 1500 aa23.98■■□□□ 1.43
PNKP-218ENST00000625299 GPATCH8Q9UKJ3 1502 aaKnown RBP23.98■■□□□ 1.43
PNKP-218ENST00000625299 NCKAP5LQ9HCH0 1330 aa23.96■■□□□ 1.43
PNKP-218ENST00000625299 MYO3AQ8NEV4 1616 aa23.95■■□□□ 1.42
PNKP-218ENST00000625299 INO80Q9ULG1 1556 aaPredicted RBP23.94■■□□□ 1.42
PNKP-218ENST00000625299 A2MP01023 1474 aa23.93■■□□□ 1.42
PNKP-218ENST00000625299 ZNF335Q9H4Z2 1342 aaPredicted RBP23.92■■□□□ 1.42
PNKP-218ENST00000625299 PLXNC1O60486 1568 aa23.92■■□□□ 1.42
PNKP-218ENST00000625299 CFDP1Q9UEE9 299 aaPredicted RBP23.92■■□□□ 1.42
PNKP-218ENST00000625299 GGT6Q6P531 493 aa23.91■■□□□ 1.42
PNKP-218ENST00000625299 ZNF142P52746 1687 aaPredicted RBP23.91■■□□□ 1.42
PNKP-218ENST00000625299 CCNB3Q8WWL7 1395 aa23.91■■□□□ 1.42
PNKP-218ENST00000625299 PLEKHH2Q8IVE3 1493 aa23.9■■□□□ 1.42
PNKP-218ENST00000625299 CEP170BQ9Y4F5 1589 aaPredicted RBP23.9■■□□□ 1.42
PNKP-218ENST00000625299 KIAA1107Q9UPP5 1409 aa23.89■■□□□ 1.41
PNKP-218ENST00000625299 PTPRKQ15262 1439 aa23.87■■□□□ 1.41
PNKP-218ENST00000625299 UBAP1LF5GYI3 381 aa23.87■■□□□ 1.41
PNKP-218ENST00000625299 PLA2R1Q13018 1463 aa23.86■■□□□ 1.41
PNKP-218ENST00000625299 MTUS2Q5JR59 1369 aa23.85■■□□□ 1.41
PNKP-218ENST00000625299 ADGBQ8N7X0 1667 aa23.85■■□□□ 1.41
PNKP-218ENST00000625299 PKD2Q13563 968 aa23.84■■□□□ 1.41
PNKP-218ENST00000625299 TCOF1Q13428 1488 aaKnown RBP23.82■■□□□ 1.4
PNKP-218ENST00000625299 PPP6R1Q9UPN7 881 aa23.8■■□□□ 1.4
PNKP-218ENST00000625299 ZNF644Q9H582 1327 aaPredicted RBP23.79■■□□□ 1.4
PNKP-218ENST00000625299 TIAM1Q13009 1591 aa23.78■■□□□ 1.4
PNKP-218ENST00000625299 A2ML1A8K2U0 1454 aa23.75■■□□□ 1.39
PNKP-218ENST00000625299 DNMT1P26358 1616 aaKnown RBP23.75■■□□□ 1.39
PNKP-218ENST00000625299 SCAF1Q9H7N4 1312 aaKnown RBP23.74■■□□□ 1.39
PNKP-218ENST00000625299 EHBP1L1Q8N3D4 1523 aa23.74■■□□□ 1.39
PNKP-218ENST00000625299 POLR1AO95602 1720 aaPredicted RBP23.73■■□□□ 1.39
PNKP-218ENST00000625299 MBD5Q9P267 1494 aa23.72■■□□□ 1.39
PNKP-218ENST00000625299 DHX29Q7Z478 1369 aaKnown RBP23.69■■□□□ 1.38
PNKP-218ENST00000625299 RTEL1-TNFRSF6BF6WH68 1400 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms