RNA–Protein interactions for RNA: ENST00000588972.1

ATG4D-210, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 5

Gene ATG4D, Length 632 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-210ENST00000588972 MRC2Q9UBG0 1479 aa14.1□□□□□ -0.15
ATG4D-210ENST00000588972 MFSD10Q14728 455 aa14.09□□□□□ -0.15
ATG4D-210ENST00000588972 MS4A4AQ96JQ5 239 aa14.09□□□□□ -0.15
ATG4D-210ENST00000588972 LARP6Q9BRS8 491 aaKnown RBP14.09□□□□□ -0.15
ATG4D-210ENST00000588972 WDR62O43379 1518 aa14.09□□□□□ -0.15
ATG4D-210ENST00000588972 PDE4AP27815 886 aa14.08□□□□□ -0.16
ATG4D-210ENST00000588972 SLC24A3Q9HC58 644 aa14.07□□□□□ -0.16
ATG4D-210ENST00000588972 CADPSQ9ULU8 1353 aa14.07□□□□□ -0.16
ATG4D-210ENST00000588972 C14orf37Q86TY3 774 aa14.05□□□□□ -0.16
ATG4D-210ENST00000588972 CRISPLD2Q9H0B8 497 aa14.05□□□□□ -0.16
ATG4D-210ENST00000588972 NEUROD2Q15784 382 aa14.04□□□□□ -0.16
ATG4D-210ENST00000588972 ARIH1Q9Y4X5 557 aaPredicted RBP14.03□□□□□ -0.16
ATG4D-210ENST00000588972 ZMYND10O75800 440 aa14.01□□□□□ -0.17
ATG4D-210ENST00000588972 SMYD5Q6GMV2 418 aa14.01□□□□□ -0.17
ATG4D-210ENST00000588972 DDX27Q96GQ7 796 aaKnown RBP14.01□□□□□ -0.17
ATG4D-210ENST00000588972 PIP4P2Q8N4L2 257 aa14□□□□□ -0.17
ATG4D-210ENST00000588972 ZRANB1Q9UGI0 708 aa14□□□□□ -0.17
ATG4D-210ENST00000588972 CEP164Q9UPV0 1460 aa13.99□□□□□ -0.17
ATG4D-210ENST00000588972 CAMK2BQ13554 666 aa13.98□□□□□ -0.17
ATG4D-210ENST00000588972 PHF12Q96QT6 1004 aa13.98□□□□□ -0.17
ATG4D-210ENST00000588972 WIZO95785 1651 aa13.96□□□□□ -0.17
ATG4D-210ENST00000588972 GOLGA2Q08379 1002 aa13.94□□□□□ -0.18
ATG4D-210ENST00000588972 CHRDL2Q6WN34 429 aa13.94□□□□□ -0.18
ATG4D-210ENST00000588972 ARXQ96QS3 562 aa13.94□□□□□ -0.18
ATG4D-210ENST00000588972 TMEM106CQ9BVX2 250 aa13.94□□□□□ -0.18
ATG4D-210ENST00000588972 FANCD2Q9BXW9 1451 aa13.93□□□□□ -0.18
ATG4D-210ENST00000588972 CD44P16070 742 aaKnown RBP13.93□□□□□ -0.18
ATG4D-210ENST00000588972 BARGINQ6ZT62 677 aa13.92□□□□□ -0.18
ATG4D-210ENST00000588972 CFTRP13569 1480 aa13.88□□□□□ -0.19
ATG4D-210ENST00000588972 TRPC6Q9Y210 931 aa13.88□□□□□ -0.19
ATG4D-210ENST00000588972 MKRN3Q13064 507 aaKnown RBP13.87□□□□□ -0.19
ATG4D-210ENST00000588972 MLLT3P42568 568 aaPredicted RBP13.85□□□□□ -0.19
ATG4D-210ENST00000588972 RBM26Q5T8P6 1007 aaKnown RBP13.84□□□□□ -0.19
ATG4D-210ENST00000588972 MS4A3Q96HJ5 214 aa13.84□□□□□ -0.19
ATG4D-210ENST00000588972 PPP1R15BQ5SWA1 713 aa13.83□□□□□ -0.2
ATG4D-210ENST00000588972 URB2Q14146 1524 aaKnown RBP13.83□□□□□ -0.2
ATG4D-210ENST00000588972 TOP2AP11388 1531 aaKnown RBP13.81□□□□□ -0.2
ATG4D-210ENST00000588972 GPHNQ9NQX3 736 aaPredicted RBP13.81□□□□□ -0.2
ATG4D-210ENST00000588972 ILDR1Q86SU0 546 aaPredicted RBP13.8□□□□□ -0.2
ATG4D-210ENST00000588972 GPIHBP1Q8IV16 184 aa13.8□□□□□ -0.2
ATG4D-210ENST00000588972 AK7Q96M32 723 aa13.8□□□□□ -0.2
ATG4D-210ENST00000588972 PRDM2Q13029 1718 aa13.78□□□□□ -0.2
ATG4D-210ENST00000588972 RIMBP3CA6NJZ7 1639 aa13.77□□□□□ -0.21
ATG4D-210ENST00000588972 RIMBP3BA6NNM3 1639 aa13.77□□□□□ -0.21
ATG4D-210ENST00000588972 RIMBP3Q9UFD9 1639 aa13.77□□□□□ -0.21
ATG4D-210ENST00000588972 RSF1Q96T23 1441 aaPredicted RBP13.75□□□□□ -0.21
ATG4D-210ENST00000588972 TIE1P35590 1138 aa13.75□□□□□ -0.21
ATG4D-210ENST00000588972 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.75□□□□□ -0.21
ATG4D-210ENST00000588972 DPYSL4O14531 572 aa13.74□□□□□ -0.21
ATG4D-210ENST00000588972 KRI1Q8N9T8 703 aaKnown RBP13.74□□□□□ -0.21
ATG4D-210ENST00000588972 GPBP1L1Q9HC44 474 aaPredicted RBP13.74□□□□□ -0.21
ATG4D-210ENST00000588972 EMILIN3Q9NT22 766 aa13.74□□□□□ -0.21
ATG4D-210ENST00000588972 TTLL13PA6NNM8 815 aa13.73□□□□□ -0.21
ATG4D-210ENST00000588972 SPDYE16A6NNV3 312 aaPredicted RBP13.71□□□□□ -0.21
ATG4D-210ENST00000588972 PDIA6Q15084 440 aa13.71□□□□□ -0.21
ATG4D-210ENST00000588972 HOMEZQ8IX15 550 aa13.71□□□□□ -0.21
ATG4D-210ENST00000588972 IFT140Q96RY7 1462 aa13.71□□□□□ -0.21
ATG4D-210ENST00000588972 ARHGEF11O15085 1522 aa13.7□□□□□ -0.22
ATG4D-210ENST00000588972 DSG2Q14126 1118 aa13.7□□□□□ -0.22
ATG4D-210ENST00000588972 ZNF608Q9ULD9 1512 aaPredicted RBP13.69□□□□□ -0.22
ATG4D-210ENST00000588972 C19orf67A6NJJ6 358 aa13.67□□□□□ -0.22
ATG4D-210ENST00000588972 DAXXQ9UER7 740 aaPredicted RBP13.67□□□□□ -0.22
ATG4D-210ENST00000588972 TRIM66O15016 1216 aa13.66□□□□□ -0.22
ATG4D-210ENST00000588972 DPY19L2Q6NUT2 758 aa13.66□□□□□ -0.22
ATG4D-210ENST00000588972 BMP2KQ9NSY1 1161 aaPredicted RBP13.66□□□□□ -0.22
ATG4D-210ENST00000588972 EIF4G3O43432 1585 aaKnown RBP13.66□□□□□ -0.22
ATG4D-210ENST00000588972 SUPT5HO00267 1087 aaKnown RBP13.65□□□□□ -0.22
ATG4D-210ENST00000588972 MICALL2Q8IY33 904 aa13.65□□□□□ -0.22
ATG4D-210ENST00000588972 KDM4CQ9H3R0 1056 aa13.65□□□□□ -0.22
ATG4D-210ENST00000588972 TOPBP1Q92547 1522 aa13.64□□□□□ -0.23
ATG4D-210ENST00000588972 FOXK1P85037 733 aa13.64□□□□□ -0.23
ATG4D-210ENST00000588972 IL27Q8NEV9 243 aa13.64□□□□□ -0.23
ATG4D-210ENST00000588972 GPR37O15354 613 aa13.63□□□□□ -0.23
ATG4D-210ENST00000588972 PDE4DQ08499 809 aa13.63□□□□□ -0.23
ATG4D-210ENST00000588972 TRIM35Q9UPQ4 493 aa13.63□□□□□ -0.23
ATG4D-210ENST00000588972 TMC2Q8TDI7 906 aa13.62□□□□□ -0.23
ATG4D-210ENST00000588972 ABCC8Q09428 1581 aa13.61□□□□□ -0.23
ATG4D-210ENST00000588972 CCDC88BA6NC98 1476 aa13.6□□□□□ -0.23
ATG4D-210ENST00000588972 DNMBPQ6XZF7 1577 aa13.59□□□□□ -0.23
ATG4D-210ENST00000588972 CHD1O14646 1710 aa13.59□□□□□ -0.23
ATG4D-210ENST00000588972 PLPP6Q8IY26 295 aa13.57□□□□□ -0.24
ATG4D-210ENST00000588972 PDCD7Q8N8D1 485 aaKnown RBP13.57□□□□□ -0.24
ATG4D-210ENST00000588972 TARBP1Q13395 1621 aaKnown RBP13.56□□□□□ -0.24
ATG4D-210ENST00000588972 ARAP1Q96P48 1450 aa13.55□□□□□ -0.24
ATG4D-210ENST00000588972 GALR2O43603 387 aaPredicted RBP13.53□□□□□ -0.24
ATG4D-210ENST00000588972 CYB5RLQ6IPT4 315 aa13.53□□□□□ -0.24
ATG4D-210ENST00000588972 TMEM121BQ9BXQ6 578 aaPredicted RBP13.53□□□□□ -0.24
ATG4D-210ENST00000588972 C2orf72A6NCS6 295 aa13.52□□□□□ -0.25
ATG4D-210ENST00000588972 KIF3CO14782 793 aa13.52□□□□□ -0.25
ATG4D-210ENST00000588972 AQRO60306 1485 aaKnown RBP eCLIP13.51□□□□□ -0.25
ATG4D-210ENST00000588972 MINK1Q8N4C8 1332 aaPredicted RBP13.51□□□□□ -0.25
ATG4D-210ENST00000588972 GRXCR2A6NFK2 248 aa13.5□□□□□ -0.25
ATG4D-210ENST00000588972 POLA1P09884 1462 aaPredicted RBP13.49□□□□□ -0.25
ATG4D-210ENST00000588972 MAP3K9P80192 1104 aa13.49□□□□□ -0.25
ATG4D-210ENST00000588972 NUTM2FA1L443 756 aa13.48□□□□□ -0.25
ATG4D-210ENST00000588972 FAM117AQ9C073 453 aa13.48□□□□□ -0.25
ATG4D-210ENST00000588972 BOLA1Q9Y3E2 137 aa13.48□□□□□ -0.25
ATG4D-210ENST00000588972 IRX5P78411 483 aaPredicted RBP13.47□□□□□ -0.25
ATG4D-210ENST00000588972 MAP2K5Q13163 448 aa13.47□□□□□ -0.25
ATG4D-210ENST00000588972 CCDC102AQ96A19 550 aa13.47□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms