RNA–Protein interactions for RNA: ENST00000588617.1

VMP1-208, Transcript of vacuole membrane protein 1, humanhuman

TSL 4

Gene VMP1, Length 884 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-208ENST00000588617 TRPC6Q9Y210 931 aa14.46□□□□□ -0.09
VMP1-208ENST00000588617 ATMINO43313 823 aaPredicted RBP14.44□□□□□ -0.1
VMP1-208ENST00000588617 MFSD10Q14728 455 aa14.44□□□□□ -0.1
VMP1-208ENST00000588617 DDX27Q96GQ7 796 aaKnown RBP14.43□□□□□ -0.1
VMP1-208ENST00000588617 ARIH1Q9Y4X5 557 aaPredicted RBP14.43□□□□□ -0.1
VMP1-208ENST00000588617 AK7Q96M32 723 aa14.41□□□□□ -0.1
VMP1-208ENST00000588617 CRISPLD2Q9H0B8 497 aa14.4□□□□□ -0.1
VMP1-208ENST00000588617 BMP2KQ9NSY1 1161 aaPredicted RBP14.39□□□□□ -0.11
VMP1-208ENST00000588617 KRI1Q8N9T8 703 aaKnown RBP14.38□□□□□ -0.11
VMP1-208ENST00000588617 ATN1P54259 1190 aaPredicted RBP14.36□□□□□ -0.11
VMP1-208ENST00000588617 MS4A4AQ96JQ5 239 aa14.36□□□□□ -0.11
VMP1-208ENST00000588617 TIE1P35590 1138 aa14.35□□□□□ -0.11
VMP1-208ENST00000588617 CAMK2BQ13554 666 aa14.35□□□□□ -0.11
VMP1-208ENST00000588617 RBM26Q5T8P6 1007 aaKnown RBP14.35□□□□□ -0.11
VMP1-208ENST00000588617 GPBP1L1Q9HC44 474 aaPredicted RBP14.35□□□□□ -0.11
VMP1-208ENST00000588617 GPIHBP1Q8IV16 184 aa14.34□□□□□ -0.11
VMP1-208ENST00000588617 IL27Q8NEV9 243 aa14.33□□□□□ -0.12
VMP1-208ENST00000588617 METRNQ9UJH8 293 aa14.31□□□□□ -0.12
VMP1-208ENST00000588617 TTLL13PA6NNM8 815 aa14.3□□□□□ -0.12
VMP1-208ENST00000588617 MLLT3P42568 568 aaPredicted RBP14.3□□□□□ -0.12
VMP1-208ENST00000588617 SLC39A7Q92504 469 aa14.3□□□□□ -0.12
VMP1-208ENST00000588617 POTEB2H3BUK9 544 aa14.29□□□□□ -0.12
VMP1-208ENST00000588617 GOLGA2Q08379 1002 aa14.29□□□□□ -0.12
VMP1-208ENST00000588617 C7P10643 843 aa14.27□□□□□ -0.13
VMP1-208ENST00000588617 KDM4CQ9H3R0 1056 aa14.27□□□□□ -0.13
VMP1-208ENST00000588617 ZMYND15Q9H091 742 aa14.25□□□□□ -0.13
VMP1-208ENST00000588617 TRIM66O15016 1216 aa14.22□□□□□ -0.13
VMP1-208ENST00000588617 PDE4DQ08499 809 aa14.21□□□□□ -0.13
VMP1-208ENST00000588617 TRIM35Q9UPQ4 493 aa14.21□□□□□ -0.13
VMP1-208ENST00000588617 PPP1R15BQ5SWA1 713 aa14.2□□□□□ -0.14
VMP1-208ENST00000588617 TMEM106CQ9BVX2 250 aa14.2□□□□□ -0.14
VMP1-208ENST00000588617 POTEFA5A3E0 1075 aa14.18□□□□□ -0.14
VMP1-208ENST00000588617 MKRN3Q13064 507 aaKnown RBP14.18□□□□□ -0.14
VMP1-208ENST00000588617 RSPH6AQ9H0K4 717 aa14.18□□□□□ -0.14
VMP1-208ENST00000588617 OTUD5Q96G74 571 aa14.16□□□□□ -0.14
VMP1-208ENST00000588617 DPYSL4O14531 572 aa14.15□□□□□ -0.14
VMP1-208ENST00000588617 GPHNQ9NQX3 736 aaPredicted RBP14.15□□□□□ -0.14
VMP1-208ENST00000588617 SPDYE16A6NNV3 312 aaPredicted RBP14.14□□□□□ -0.15
VMP1-208ENST00000588617 POTEJP0CG39 1038 aa14.14□□□□□ -0.15
VMP1-208ENST00000588617 UBTFP17480 764 aaKnown RBP14.14□□□□□ -0.15
VMP1-208ENST00000588617 COLQQ9Y215 455 aaPredicted RBP14.12□□□□□ -0.15
VMP1-208ENST00000588617 IER5LQ5T953 404 aa14.11□□□□□ -0.15
VMP1-208ENST00000588617 EMILIN3Q9NT22 766 aa14.1□□□□□ -0.15
VMP1-208ENST00000588617 PODXL2Q9NZ53 605 aa14.1□□□□□ -0.15
VMP1-208ENST00000588617 PDIA6Q15084 440 aa14.08□□□□□ -0.16
VMP1-208ENST00000588617 FAM117AQ9C073 453 aa14.06□□□□□ -0.16
VMP1-208ENST00000588617 ZNF316A6NFI3 1004 aaPredicted RBP14.05□□□□□ -0.16
VMP1-208ENST00000588617 SEC24BO95487 1268 aa14.05□□□□□ -0.16
VMP1-208ENST00000588617 DSG2Q14126 1118 aa14.04□□□□□ -0.16
VMP1-208ENST00000588617 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP14.03□□□□□ -0.162e-48■□□□□ 10.3
VMP1-208ENST00000588617 MINK1Q8N4C8 1332 aaPredicted RBP14.02□□□□□ -0.17
VMP1-208ENST00000588617 GPR37O15354 613 aa14.02□□□□□ -0.17
VMP1-208ENST00000588617 IRX5P78411 483 aaPredicted RBP14□□□□□ -0.17
VMP1-208ENST00000588617 ARID3AQ99856 593 aa14□□□□□ -0.17
VMP1-208ENST00000588617 NUTM2FA1L443 756 aa13.99□□□□□ -0.17
VMP1-208ENST00000588617 DDRGK1Q96HY6 314 aa13.99□□□□□ -0.17
VMP1-208ENST00000588617 MAMSTRQ6ZN01 415 aa13.98□□□□□ -0.17
VMP1-208ENST00000588617 TMC2Q8TDI7 906 aa13.98□□□□□ -0.17
VMP1-208ENST00000588617 GRXCR2A6NFK2 248 aa13.97□□□□□ -0.17
VMP1-208ENST00000588617 PLCG2P16885 1265 aa13.96□□□□□ -0.17
VMP1-208ENST00000588617 MAP2K5Q13163 448 aa13.96□□□□□ -0.17
VMP1-208ENST00000588617 ILDR1Q86SU0 546 aaPredicted RBP13.96□□□□□ -0.17
VMP1-208ENST00000588617 CCDC102AQ96A19 550 aa13.96□□□□□ -0.17
VMP1-208ENST00000588617 PLEKHG3A1L390 1219 aa13.95□□□□□ -0.18
VMP1-208ENST00000588617 FOXK1P85037 733 aa13.95□□□□□ -0.18
VMP1-208ENST00000588617 IRF6O14896 467 aa13.94□□□□□ -0.18
VMP1-208ENST00000588617 SCUBE2Q9NQ36 999 aa13.93□□□□□ -0.18
VMP1-208ENST00000588617 FLIIQ13045 1269 aa13.91□□□□□ -0.18
VMP1-208ENST00000588617 AMHR2Q16671 573 aa13.91□□□□□ -0.18
VMP1-208ENST00000588617 DPY19L2Q6NUT2 758 aa13.91□□□□□ -0.18
VMP1-208ENST00000588617 PLPP6Q8IY26 295 aa13.91□□□□□ -0.18
VMP1-208ENST00000588617 OCEL1Q9H607 264 aa13.91□□□□□ -0.18
VMP1-208ENST00000588617 MAP3K9P80192 1104 aa13.9□□□□□ -0.18
VMP1-208ENST00000588617 TRIM26Q12899 539 aaPredicted RBP13.9□□□□□ -0.18
VMP1-208ENST00000588617 PARP9Q8IXQ6 854 aa13.9□□□□□ -0.18
VMP1-208ENST00000588617 MICALL2Q8IY33 904 aa13.9□□□□□ -0.18
VMP1-208ENST00000588617 C1orf115Q9H7X2 142 aa13.9□□□□□ -0.18
VMP1-208ENST00000588617 GNPATO15228 680 aa13.88□□□□□ -0.19
VMP1-208ENST00000588617 ARID3CA6NKF2 412 aa13.86□□□□□ -0.19
VMP1-208ENST00000588617 APBB1O00213 710 aa13.86□□□□□ -0.19
VMP1-208ENST00000588617 PDCD7Q8N8D1 485 aaKnown RBP13.86□□□□□ -0.19
VMP1-208ENST00000588617 HIC1Q14526 733 aa13.84□□□□□ -0.19
VMP1-208ENST00000588617 FCHSD2O94868 740 aa13.83□□□□□ -0.2
VMP1-208ENST00000588617 OSBPP22059 807 aa13.83□□□□□ -0.2
VMP1-208ENST00000588617 TTLL12Q14166 644 aaPredicted RBP13.83□□□□□ -0.2
VMP1-208ENST00000588617 FECHP22830 423 aa13.82□□□□□ -0.2
VMP1-208ENST00000588617 C2orf72A6NCS6 295 aa13.81□□□□□ -0.2
VMP1-208ENST00000588617 GOPCQ9HD26 462 aa13.81□□□□□ -0.2
VMP1-208ENST00000588617 RANGAP1P46060 587 aaPredicted RBP13.8□□□□□ -0.2
VMP1-208ENST00000588617 UPF1Q92900 1129 aaKnown RBP eCLIP13.79□□□□□ -0.2
VMP1-208ENST00000588617 HRCP23327 699 aa13.78□□□□□ -0.2
VMP1-208ENST00000588617 DDX12PQ92771 950 aa13.77□□□□□ -0.21
VMP1-208ENST00000588617 PCMTD1Q96MG8 357 aaPredicted RBP13.77□□□□□ -0.21
VMP1-208ENST00000588617 KIF3CO14782 793 aa13.75□□□□□ -0.21
VMP1-208ENST00000588617 G3V3G9 751 aa13.74□□□□□ -0.21
VMP1-208ENST00000588617 ONECUT3O60422 494 aaPredicted RBP13.74□□□□□ -0.21
VMP1-208ENST00000588617 PTGER2P43116 358 aa13.74□□□□□ -0.21
VMP1-208ENST00000588617 GIGYF2Q6Y7W6 1299 aaKnown RBP13.73□□□□□ -0.21
VMP1-208ENST00000588617 BOLA1Q9Y3E2 137 aa13.73□□□□□ -0.21
VMP1-208ENST00000588617 SLAIN1Q8ND83 568 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms