RNA–Protein interactions for RNA: ENST00000562956.1

LINC00838-201, long intergenic non-protein coding RNA 838, humanhuman

TSL 1 (best) BASIC

Gene LINC00838, Length 2,936 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00838-201ENST00000562956 AKNAQ7Z591 1439 aa13.77□□□□□ -0.2
LINC00838-201ENST00000562956 DNMT1P26358 1616 aaKnown RBP13.77□□□□□ -0.21
LINC00838-201ENST00000562956 ROCK1Q13464 1354 aa13.74□□□□□ -0.21
LINC00838-201ENST00000562956 SIN3AQ96ST3 1273 aa13.74□□□□□ -0.21
LINC00838-201ENST00000562956 UHRF1BP1LA0JNW5 1464 aa13.74□□□□□ -0.21
LINC00838-201ENST00000562956 GCC2Q8IWJ2 1684 aa13.74□□□□□ -0.21
LINC00838-201ENST00000562956 ZNF316A6NFI3 1004 aaPredicted RBP13.74□□□□□ -0.21
LINC00838-201ENST00000562956 KDM6BO15054 1643 aa13.73□□□□□ -0.21
LINC00838-201ENST00000562956 CDC42BPAQ5VT25 1732 aa13.73□□□□□ -0.21
LINC00838-201ENST00000562956 OSCARQ8IYS5 282 aa13.73□□□□□ -0.21
LINC00838-201ENST00000562956 NEUROD1Q13562 356 aa13.71□□□□□ -0.21
LINC00838-201ENST00000562956 KDM5BQ9UGL1 1544 aa13.7□□□□□ -0.22
LINC00838-201ENST00000562956 ZCCHC11Q5TAX3 1644 aaKnown RBP13.69□□□□□ -0.22
LINC00838-201ENST00000562956 KCNH8Q96L42 1107 aa13.69□□□□□ -0.22
LINC00838-201ENST00000562956 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.68□□□□□ -0.22
LINC00838-201ENST00000562956 TRIM52Q96A61 297 aa13.68□□□□□ -0.22
LINC00838-201ENST00000562956 NCOA1Q15788 1441 aa13.68□□□□□ -0.22
LINC00838-201ENST00000562956 TTC37Q6PGP7 1564 aa13.68□□□□□ -0.22
LINC00838-201ENST00000562956 HNRNPMP52272 730 aaKnown RBP eCLIP13.66□□□□□ -0.22
LINC00838-201ENST00000562956 DIEXFQ68CQ4 756 aaKnown RBP13.66□□□□□ -0.22
LINC00838-201ENST00000562956 PREX2Q70Z35 1606 aa13.66□□□□□ -0.22
LINC00838-201ENST00000562956 DENND4BO75064 1496 aaPredicted RBP13.66□□□□□ -0.22
LINC00838-201ENST00000562956 ADGRL2O95490 1459 aa13.66□□□□□ -0.22
LINC00838-201ENST00000562956 CROCC2H7BZ55 1655 aa13.65□□□□□ -0.22
LINC00838-201ENST00000562956 CDC42BPBQ9Y5S2 1711 aa13.65□□□□□ -0.22
LINC00838-201ENST00000562956 MBD5Q9P267 1494 aa13.65□□□□□ -0.22
LINC00838-201ENST00000562956 SAMD9LQ8IVG5 1584 aa13.65□□□□□ -0.23
LINC00838-201ENST00000562956 ANKRD30AQ9BXX3 1397 aa13.64□□□□□ -0.23
LINC00838-201ENST00000562956 C9orf84Q5VXU9 1444 aa13.63□□□□□ -0.23
LINC00838-201ENST00000562956 MPHOSPH9Q99550 1183 aa13.63□□□□□ -0.23
LINC00838-201ENST00000562956 SHANK2Q9UPX8 1470 aa13.63□□□□□ -0.23
LINC00838-201ENST00000562956 ARHGAP5Q13017 1502 aa13.63□□□□□ -0.23
LINC00838-201ENST00000562956 TIMELESSQ9UNS1 1208 aa13.63□□□□□ -0.23
LINC00838-201ENST00000562956 ADGBQ8N7X0 1667 aa13.62□□□□□ -0.23
LINC00838-201ENST00000562956 TSPY4P0CV99 314 aa13.62□□□□□ -0.23
LINC00838-201ENST00000562956 TSPY10P0CW01 314 aa13.62□□□□□ -0.23
LINC00838-201ENST00000562956 ARHGEF5Q12774 1597 aa13.61□□□□□ -0.23
LINC00838-201ENST00000562956 PLCH2O75038 1416 aa13.6□□□□□ -0.23
LINC00838-201ENST00000562956 FOXD1Q16676 465 aa13.6□□□□□ -0.23
LINC00838-201ENST00000562956 CCDC141Q6ZP82 1450 aa13.59□□□□□ -0.23
LINC00838-201ENST00000562956 ACIN1Q9UKV3 1341 aaKnown RBP13.59□□□□□ -0.23
LINC00838-201ENST00000562956 SYCP2Q9BX26 1530 aa13.59□□□□□ -0.23
LINC00838-201ENST00000562956 MYO5CQ9NQX4 1742 aa13.59□□□□□ -0.23
LINC00838-201ENST00000562956 ANKRD50Q9ULJ7 1429 aa13.58□□□□□ -0.23
LINC00838-201ENST00000562956 WDR7Q9Y4E6 1490 aa13.58□□□□□ -0.23
LINC00838-201ENST00000562956 PPP1R15AO75807 674 aaPredicted RBP13.58□□□□□ -0.24
LINC00838-201ENST00000562956 RSPH4AQ5TD94 716 aa13.58□□□□□ -0.24
LINC00838-201ENST00000562956 TONSLQ96HA7 1378 aa13.58□□□□□ -0.24
LINC00838-201ENST00000562956 SLC4A1APQ9BWU0 796 aaKnown RBP13.57□□□□□ -0.24
LINC00838-201ENST00000562956 KIF15Q9NS87 1388 aa13.56□□□□□ -0.24
LINC00838-201ENST00000562956 KIAA1107Q9UPP5 1409 aa13.56□□□□□ -0.24
LINC00838-201ENST00000562956 PZPP20742 1482 aa13.56□□□□□ -0.24
LINC00838-201ENST00000562956 ARHGEF12Q9NZN5 1544 aa13.55□□□□□ -0.24
LINC00838-201ENST00000562956 EFCAB2Q5VUJ9 269 aa13.55□□□□□ -0.24
LINC00838-201ENST00000562956 PLEKHH2Q8IVE3 1493 aa13.55□□□□□ -0.24
LINC00838-201ENST00000562956 ASXL2Q76L83 1435 aa13.55□□□□□ -0.24
LINC00838-201ENST00000562956 ANKRD30BQ9BXX2 1392 aa13.54□□□□□ -0.24
LINC00838-201ENST00000562956 MAST1Q9Y2H9 1570 aa13.51□□□□□ -0.25
LINC00838-201ENST00000562956 NPM1P06748 294 aaKnown RBP eCLIP13.5□□□□□ -0.25
LINC00838-201ENST00000562956 ABCC1P33527 1531 aa13.5□□□□□ -0.25
LINC00838-201ENST00000562956 NUP155O75694 1391 aa13.5□□□□□ -0.25
LINC00838-201ENST00000562956 ARAP3Q8WWN8 1544 aa13.5□□□□□ -0.25
LINC00838-201ENST00000562956 TRAPPC8Q9Y2L5 1435 aa13.49□□□□□ -0.25
LINC00838-201ENST00000562956 ABCA9Q8IUA7 1624 aa13.49□□□□□ -0.25
LINC00838-201ENST00000562956 PKD2Q13563 968 aa13.49□□□□□ -0.25
LINC00838-201ENST00000562956 RPRD2Q5VT52 1461 aaKnown RBP13.47□□□□□ -0.25
LINC00838-201ENST00000562956 FANCAO15360 1455 aa13.47□□□□□ -0.25
LINC00838-201ENST00000562956 KDM5DQ9BY66 1539 aa13.46□□□□□ -0.25
LINC00838-201ENST00000562956 PLXNC1O60486 1568 aa13.46□□□□□ -0.25
LINC00838-201ENST00000562956 AFAP1Q8N556 730 aa13.46□□□□□ -0.26
LINC00838-201ENST00000562956 L3MBTL2Q969R5 705 aa13.46□□□□□ -0.26
LINC00838-201ENST00000562956 MIER1Q8N108 512 aa13.44□□□□□ -0.26
LINC00838-201ENST00000562956 SPAG9O60271 1321 aaKnown RBP13.43□□□□□ -0.26
LINC00838-201ENST00000562956 HIRIP3Q9BW71 556 aaPredicted RBP13.43□□□□□ -0.26
LINC00838-201ENST00000562956 DUOX2Q9NRD8 1548 aa13.42□□□□□ -0.26
LINC00838-201ENST00000562956 TEX14Q8IWB6 1497 aa13.42□□□□□ -0.26
LINC00838-201ENST00000562956 CYB5RLQ6IPT4 315 aa13.42□□□□□ -0.26
LINC00838-201ENST00000562956 FAM135AQ9P2D6 1515 aa13.41□□□□□ -0.26
LINC00838-201ENST00000562956 ADGRL1O94910 1474 aa13.41□□□□□ -0.26
LINC00838-201ENST00000562956 SCAPERQ9BY12 1400 aa13.41□□□□□ -0.26
LINC00838-201ENST00000562956 RTEL1-TNFRSF6BF6WH68 1400 aa13.4□□□□□ -0.26
LINC00838-201ENST00000562956 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.4□□□□□ -0.26
LINC00838-201ENST00000562956 ERBINQ96RT1 1412 aa13.4□□□□□ -0.26
LINC00838-201ENST00000562956 ZFYVE16Q7Z3T8 1539 aa13.4□□□□□ -0.26
LINC00838-201ENST00000562956 CD109Q6YHK3 1445 aa13.39□□□□□ -0.27
LINC00838-201ENST00000562956 UNC13BO14795 1591 aa13.39□□□□□ -0.27
LINC00838-201ENST00000562956 GTF3C3Q9Y5Q9 886 aa13.38□□□□□ -0.27
LINC00838-201ENST00000562956 RIMBP3CA6NJZ7 1639 aa13.37□□□□□ -0.27
LINC00838-201ENST00000562956 RIMBP3BA6NNM3 1639 aa13.37□□□□□ -0.27
LINC00838-201ENST00000562956 RIMBP3Q9UFD9 1639 aa13.37□□□□□ -0.27
LINC00838-201ENST00000562956 NBPF8Q3BBV2 869 aa13.37□□□□□ -0.27
LINC00838-201ENST00000562956 MAGI2Q86UL8 1455 aa13.36□□□□□ -0.27
LINC00838-201ENST00000562956 ATP7AQ04656 1500 aa13.36□□□□□ -0.27
LINC00838-201ENST00000562956 INO80Q9ULG1 1556 aaPredicted RBP13.35□□□□□ -0.27
LINC00838-201ENST00000562956 IQGAP3Q86VI3 1631 aa13.34□□□□□ -0.27
LINC00838-201ENST00000562956 MYT1LQ9UL68 1186 aa13.34□□□□□ -0.27
LINC00838-201ENST00000562956 MYT1Q01538 1121 aa13.33□□□□□ -0.28
LINC00838-201ENST00000562956 DDX10Q13206 875 aaKnown RBP13.33□□□□□ -0.28
LINC00838-201ENST00000562956 ZNF518AQ6AHZ1 1483 aa13.32□□□□□ -0.28
LINC00838-201ENST00000562956 HSPA5P11021 654 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms