RNA–Protein interactions for RNA: ENST00000562956.1

LINC00838-201, long intergenic non-protein coding RNA 838, humanhuman

TSL 1 (best) BASIC

Gene LINC00838, Length 2,936 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00838-201ENST00000562956 AKNAQ7Z591 1439 aa13.77□□□□□ -0.2
LINC00838-201ENST00000562956 DNMT1P26358 1616 aaKnown RBP13.77□□□□□ -0.21
LINC00838-201ENST00000562956 ROCK1Q13464 1354 aa13.74□□□□□ -0.21
LINC00838-201ENST00000562956 SIN3AQ96ST3 1273 aa13.74□□□□□ -0.21
LINC00838-201ENST00000562956 UHRF1BP1LA0JNW5 1464 aa13.74□□□□□ -0.21
LINC00838-201ENST00000562956 GCC2Q8IWJ2 1684 aa13.74□□□□□ -0.21
LINC00838-201ENST00000562956 ZNF316A6NFI3 1004 aaPredicted RBP13.74□□□□□ -0.21
LINC00838-201ENST00000562956 KDM6BO15054 1643 aa13.73□□□□□ -0.21
LINC00838-201ENST00000562956 CDC42BPAQ5VT25 1732 aa13.73□□□□□ -0.21
LINC00838-201ENST00000562956 OSCARQ8IYS5 282 aa13.73□□□□□ -0.21
LINC00838-201ENST00000562956 NEUROD1Q13562 356 aa13.71□□□□□ -0.21
LINC00838-201ENST00000562956 KDM5BQ9UGL1 1544 aa13.7□□□□□ -0.22
LINC00838-201ENST00000562956 ZCCHC11Q5TAX3 1644 aaKnown RBP13.69□□□□□ -0.22
LINC00838-201ENST00000562956 KCNH8Q96L42 1107 aa13.69□□□□□ -0.22
LINC00838-201ENST00000562956 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.68□□□□□ -0.22
LINC00838-201ENST00000562956 TRIM52Q96A61 297 aa13.68□□□□□ -0.22
LINC00838-201ENST00000562956 NCOA1Q15788 1441 aa13.68□□□□□ -0.22
LINC00838-201ENST00000562956 TTC37Q6PGP7 1564 aa13.68□□□□□ -0.22
LINC00838-201ENST00000562956 HNRNPMP52272 730 aaKnown RBP eCLIP13.66□□□□□ -0.22
LINC00838-201ENST00000562956 DIEXFQ68CQ4 756 aaKnown RBP13.66□□□□□ -0.22
LINC00838-201ENST00000562956 PREX2Q70Z35 1606 aa13.66□□□□□ -0.22
LINC00838-201ENST00000562956 DENND4BO75064 1496 aaPredicted RBP13.66□□□□□ -0.22
LINC00838-201ENST00000562956 ADGRL2O95490 1459 aa13.66□□□□□ -0.22
LINC00838-201ENST00000562956 CROCC2H7BZ55 1655 aa13.65□□□□□ -0.22
LINC00838-201ENST00000562956 CDC42BPBQ9Y5S2 1711 aa13.65□□□□□ -0.22
LINC00838-201ENST00000562956 MBD5Q9P267 1494 aa13.65□□□□□ -0.22
LINC00838-201ENST00000562956 SAMD9LQ8IVG5 1584 aa13.65□□□□□ -0.23
LINC00838-201ENST00000562956 ANKRD30AQ9BXX3 1397 aa13.64□□□□□ -0.23
LINC00838-201ENST00000562956 C9orf84Q5VXU9 1444 aa13.63□□□□□ -0.23
LINC00838-201ENST00000562956 MPHOSPH9Q99550 1183 aa13.63□□□□□ -0.23
LINC00838-201ENST00000562956 SHANK2Q9UPX8 1470 aa13.63□□□□□ -0.23
LINC00838-201ENST00000562956 ARHGAP5Q13017 1502 aa13.63□□□□□ -0.23
LINC00838-201ENST00000562956 TIMELESSQ9UNS1 1208 aa13.63□□□□□ -0.23
LINC00838-201ENST00000562956 ADGBQ8N7X0 1667 aa13.62□□□□□ -0.23
LINC00838-201ENST00000562956 TSPY4P0CV99 314 aa13.62□□□□□ -0.23
LINC00838-201ENST00000562956 TSPY10P0CW01 314 aa13.62□□□□□ -0.23
LINC00838-201ENST00000562956 ARHGEF5Q12774 1597 aa13.61□□□□□ -0.23
LINC00838-201ENST00000562956 PLCH2O75038 1416 aa13.6□□□□□ -0.23
LINC00838-201ENST00000562956 FOXD1Q16676 465 aa13.6□□□□□ -0.23
LINC00838-201ENST00000562956 CCDC141Q6ZP82 1450 aa13.59□□□□□ -0.23
LINC00838-201ENST00000562956 ACIN1Q9UKV3 1341 aaKnown RBP13.59□□□□□ -0.23
LINC00838-201ENST00000562956 SYCP2Q9BX26 1530 aa13.59□□□□□ -0.23
LINC00838-201ENST00000562956 MYO5CQ9NQX4 1742 aa13.59□□□□□ -0.23
LINC00838-201ENST00000562956 ANKRD50Q9ULJ7 1429 aa13.58□□□□□ -0.23
LINC00838-201ENST00000562956 WDR7Q9Y4E6 1490 aa13.58□□□□□ -0.23
LINC00838-201ENST00000562956 PPP1R15AO75807 674 aaPredicted RBP13.58□□□□□ -0.24
LINC00838-201ENST00000562956 RSPH4AQ5TD94 716 aa13.58□□□□□ -0.24
LINC00838-201ENST00000562956 TONSLQ96HA7 1378 aa13.58□□□□□ -0.24
LINC00838-201ENST00000562956 SLC4A1APQ9BWU0 796 aaKnown RBP13.57□□□□□ -0.24
LINC00838-201ENST00000562956 KIF15Q9NS87 1388 aa13.56□□□□□ -0.24
LINC00838-201ENST00000562956 KIAA1107Q9UPP5 1409 aa13.56□□□□□ -0.24
LINC00838-201ENST00000562956 PZPP20742 1482 aa13.56□□□□□ -0.24
LINC00838-201ENST00000562956 ARHGEF12Q9NZN5 1544 aa13.55□□□□□ -0.24
LINC00838-201ENST00000562956 EFCAB2Q5VUJ9 269 aa13.55□□□□□ -0.24
LINC00838-201ENST00000562956 PLEKHH2Q8IVE3 1493 aa13.55□□□□□ -0.24
LINC00838-201ENST00000562956 ASXL2Q76L83 1435 aa13.55□□□□□ -0.24
LINC00838-201ENST00000562956 ANKRD30BQ9BXX2 1392 aa13.54□□□□□ -0.24
LINC00838-201ENST00000562956 MAST1Q9Y2H9 1570 aa13.51□□□□□ -0.25
LINC00838-201ENST00000562956 NPM1P06748 294 aaKnown RBP eCLIP13.5□□□□□ -0.25
LINC00838-201ENST00000562956 ABCC1P33527 1531 aa13.5□□□□□ -0.25
LINC00838-201ENST00000562956 NUP155O75694 1391 aa13.5□□□□□ -0.25
LINC00838-201ENST00000562956 ARAP3Q8WWN8 1544 aa13.5□□□□□ -0.25
LINC00838-201ENST00000562956 TRAPPC8Q9Y2L5 1435 aa13.49□□□□□ -0.25
LINC00838-201ENST00000562956 ABCA9Q8IUA7 1624 aa13.49□□□□□ -0.25
LINC00838-201ENST00000562956 PKD2Q13563 968 aa13.49□□□□□ -0.25
LINC00838-201ENST00000562956 RPRD2Q5VT52 1461 aaKnown RBP13.47□□□□□ -0.25
LINC00838-201ENST00000562956 FANCAO15360 1455 aa13.47□□□□□ -0.25
LINC00838-201ENST00000562956 KDM5DQ9BY66 1539 aa13.46□□□□□ -0.25
LINC00838-201ENST00000562956 PLXNC1O60486 1568 aa13.46□□□□□ -0.25
LINC00838-201ENST00000562956 AFAP1Q8N556 730 aa13.46□□□□□ -0.26
LINC00838-201ENST00000562956 L3MBTL2Q969R5 705 aa13.46□□□□□ -0.26
LINC00838-201ENST00000562956 MIER1Q8N108 512 aa13.44□□□□□ -0.26
LINC00838-201ENST00000562956 SPAG9O60271 1321 aaKnown RBP13.43□□□□□ -0.26
LINC00838-201ENST00000562956 HIRIP3Q9BW71 556 aaPredicted RBP13.43□□□□□ -0.26
LINC00838-201ENST00000562956 DUOX2Q9NRD8 1548 aa13.42□□□□□ -0.26
LINC00838-201ENST00000562956 TEX14Q8IWB6 1497 aa13.42□□□□□ -0.26
LINC00838-201ENST00000562956 CYB5RLQ6IPT4 315 aa13.42□□□□□ -0.26
LINC00838-201ENST00000562956 FAM135AQ9P2D6 1515 aa13.41□□□□□ -0.26
LINC00838-201ENST00000562956 ADGRL1O94910 1474 aa13.41□□□□□ -0.26
LINC00838-201ENST00000562956 SCAPERQ9BY12 1400 aa13.41□□□□□ -0.26
LINC00838-201ENST00000562956 RTEL1-TNFRSF6BF6WH68 1400 aa13.4□□□□□ -0.26
LINC00838-201ENST00000562956 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.4□□□□□ -0.26
LINC00838-201ENST00000562956 ERBINQ96RT1 1412 aa13.4□□□□□ -0.26
LINC00838-201ENST00000562956 ZFYVE16Q7Z3T8 1539 aa13.4□□□□□ -0.26
LINC00838-201ENST00000562956 CD109Q6YHK3 1445 aa13.39□□□□□ -0.27
LINC00838-201ENST00000562956 UNC13BO14795 1591 aa13.39□□□□□ -0.27
LINC00838-201ENST00000562956 GTF3C3Q9Y5Q9 886 aa13.38□□□□□ -0.27
LINC00838-201ENST00000562956 RIMBP3CA6NJZ7 1639 aa13.37□□□□□ -0.27
LINC00838-201ENST00000562956 RIMBP3BA6NNM3 1639 aa13.37□□□□□ -0.27
LINC00838-201ENST00000562956 RIMBP3Q9UFD9 1639 aa13.37□□□□□ -0.27
LINC00838-201ENST00000562956 NBPF8Q3BBV2 869 aa13.37□□□□□ -0.27
LINC00838-201ENST00000562956 MAGI2Q86UL8 1455 aa13.36□□□□□ -0.27
LINC00838-201ENST00000562956 ATP7AQ04656 1500 aa13.36□□□□□ -0.27
LINC00838-201ENST00000562956 INO80Q9ULG1 1556 aaPredicted RBP13.35□□□□□ -0.27
LINC00838-201ENST00000562956 IQGAP3Q86VI3 1631 aa13.34□□□□□ -0.27
LINC00838-201ENST00000562956 MYT1LQ9UL68 1186 aa13.34□□□□□ -0.27
LINC00838-201ENST00000562956 MYT1Q01538 1121 aa13.33□□□□□ -0.28
LINC00838-201ENST00000562956 DDX10Q13206 875 aaKnown RBP13.33□□□□□ -0.28
LINC00838-201ENST00000562956 ZNF518AQ6AHZ1 1483 aa13.32□□□□□ -0.28
LINC00838-201ENST00000562956 HSPA5P11021 654 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 58.9 ms