RNA–Protein interactions for RNA: ENST00000540304.5

CLIP1-212, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 5

Gene CLIP1, Length 2,554 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-212ENST00000540304 ZNF316A6NFI3 1004 aaPredicted RBP14.07□□□□□ -0.16
CLIP1-212ENST00000540304 GPATCH8Q9UKJ3 1502 aaKnown RBP14.07□□□□□ -0.16
CLIP1-212ENST00000540304 DAPK1P53355 1430 aa14.07□□□□□ -0.16
CLIP1-212ENST00000540304 CDC42BPAQ5VT25 1732 aa14.05□□□□□ -0.16
CLIP1-212ENST00000540304 CAMSAP2Q08AD1 1489 aa14.05□□□□□ -0.16
CLIP1-212ENST00000540304 ABCC10Q5T3U5 1492 aa14.05□□□□□ -0.16
CLIP1-212ENST00000540304 ABCC2Q92887 1545 aa14.04□□□□□ -0.16
CLIP1-212ENST00000540304 ABCC5O15440 1437 aa14.04□□□□□ -0.16
CLIP1-212ENST00000540304 CFDP1Q9UEE9 299 aaPredicted RBP14.04□□□□□ -0.16
CLIP1-212ENST00000540304 ROCK1Q13464 1354 aa14.04□□□□□ -0.16
CLIP1-212ENST00000540304 CHIC2Q9UKJ5 165 aa14.03□□□□□ -0.16
CLIP1-212ENST00000540304 ZNF644Q9H582 1327 aaPredicted RBP14.03□□□□□ -0.16
CLIP1-212ENST00000540304 RRP7BPQ9NSQ0 103 aa14.02□□□□□ -0.16
CLIP1-212ENST00000540304 CROCC2H7BZ55 1655 aa14.01□□□□□ -0.17
CLIP1-212ENST00000540304 ADGBQ8N7X0 1667 aa14.01□□□□□ -0.17
CLIP1-212ENST00000540304 DIEXFQ68CQ4 756 aaKnown RBP14□□□□□ -0.17
CLIP1-212ENST00000540304 KDM6BO15054 1643 aa14□□□□□ -0.17
CLIP1-212ENST00000540304 UHRF1BP1LA0JNW5 1464 aa13.98□□□□□ -0.17
CLIP1-212ENST00000540304 PREX2Q70Z35 1606 aa13.97□□□□□ -0.17
CLIP1-212ENST00000540304 ACIN1Q9UKV3 1341 aaKnown RBP13.97□□□□□ -0.17
CLIP1-212ENST00000540304 TIMELESSQ9UNS1 1208 aa13.97□□□□□ -0.17
CLIP1-212ENST00000540304 SIN3AQ96ST3 1273 aa13.96□□□□□ -0.17
CLIP1-212ENST00000540304 ZNF777Q9ULD5 760 aaPredicted RBP13.96□□□□□ -0.17
CLIP1-212ENST00000540304 ZCCHC11Q5TAX3 1644 aaKnown RBP13.95□□□□□ -0.18
CLIP1-212ENST00000540304 ADGRL2O95490 1459 aa13.95□□□□□ -0.18
CLIP1-212ENST00000540304 CDC42BPBQ9Y5S2 1711 aa13.95□□□□□ -0.18
CLIP1-212ENST00000540304 NEUROD1Q13562 356 aa13.94□□□□□ -0.18
CLIP1-212ENST00000540304 SHANK2Q9UPX8 1470 aa13.94□□□□□ -0.18
CLIP1-212ENST00000540304 CENPBP07199 599 aaPredicted RBP13.93□□□□□ -0.18
CLIP1-212ENST00000540304 KDM5BQ9UGL1 1544 aa13.93□□□□□ -0.18
CLIP1-212ENST00000540304 TTC37Q6PGP7 1564 aa13.93□□□□□ -0.18
CLIP1-212ENST00000540304 NCOA1Q15788 1441 aa13.92□□□□□ -0.18
CLIP1-212ENST00000540304 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.92□□□□□ -0.18
CLIP1-212ENST00000540304 ARHGEF5Q12774 1597 aa13.92□□□□□ -0.18
CLIP1-212ENST00000540304 TRIM52Q96A61 297 aa13.92□□□□□ -0.18
CLIP1-212ENST00000540304 MYO5CQ9NQX4 1742 aa13.91□□□□□ -0.18
CLIP1-212ENST00000540304 SAMD9LQ8IVG5 1584 aa13.91□□□□□ -0.18
CLIP1-212ENST00000540304 DENND4BO75064 1496 aaPredicted RBP13.91□□□□□ -0.18
CLIP1-212ENST00000540304 ANKRD30AQ9BXX3 1397 aa13.9□□□□□ -0.18
CLIP1-212ENST00000540304 DAXXQ9UER7 740 aaPredicted RBP13.9□□□□□ -0.18
CLIP1-212ENST00000540304 C9orf84Q5VXU9 1444 aa13.88□□□□□ -0.19
CLIP1-212ENST00000540304 TONSLQ96HA7 1378 aa13.88□□□□□ -0.19
CLIP1-212ENST00000540304 MPHOSPH9Q99550 1183 aa13.88□□□□□ -0.19
CLIP1-212ENST00000540304 ARHGAP5Q13017 1502 aa13.88□□□□□ -0.19
CLIP1-212ENST00000540304 MBD5Q9P267 1494 aa13.88□□□□□ -0.19
CLIP1-212ENST00000540304 CCDC141Q6ZP82 1450 aa13.86□□□□□ -0.19
CLIP1-212ENST00000540304 PPP1R15AO75807 674 aaPredicted RBP13.85□□□□□ -0.19
CLIP1-212ENST00000540304 OSCARQ8IYS5 282 aa13.85□□□□□ -0.19
CLIP1-212ENST00000540304 TSPY4P0CV99 314 aa13.84□□□□□ -0.19
CLIP1-212ENST00000540304 TSPY10P0CW01 314 aa13.84□□□□□ -0.19
CLIP1-212ENST00000540304 ANKRD50Q9ULJ7 1429 aa13.84□□□□□ -0.19
CLIP1-212ENST00000540304 RSPH4AQ5TD94 716 aa13.84□□□□□ -0.19
CLIP1-212ENST00000540304 SYCP2Q9BX26 1530 aa13.84□□□□□ -0.19
CLIP1-212ENST00000540304 PLEKHH2Q8IVE3 1493 aa13.84□□□□□ -0.19
CLIP1-212ENST00000540304 HNRNPMP52272 730 aaKnown RBP eCLIP13.83□□□□□ -0.19
CLIP1-212ENST00000540304 MAST1Q9Y2H9 1570 aa13.82□□□□□ -0.2
CLIP1-212ENST00000540304 KCNH8Q96L42 1107 aa13.82□□□□□ -0.2
CLIP1-212ENST00000540304 PZPP20742 1482 aa13.82□□□□□ -0.2
CLIP1-212ENST00000540304 PLCH2O75038 1416 aa13.82□□□□□ -0.2
CLIP1-212ENST00000540304 KIAA1107Q9UPP5 1409 aa13.82□□□□□ -0.2
CLIP1-212ENST00000540304 WDR7Q9Y4E6 1490 aa13.8□□□□□ -0.2
CLIP1-212ENST00000540304 SLC4A1APQ9BWU0 796 aaKnown RBP13.8□□□□□ -0.2
CLIP1-212ENST00000540304 KIF15Q9NS87 1388 aa13.8□□□□□ -0.2
CLIP1-212ENST00000540304 ARAP3Q8WWN8 1544 aa13.79□□□□□ -0.2
CLIP1-212ENST00000540304 ANKRD30BQ9BXX2 1392 aa13.79□□□□□ -0.2
CLIP1-212ENST00000540304 KDM5DQ9BY66 1539 aa13.78□□□□□ -0.2
CLIP1-212ENST00000540304 ABCC1P33527 1531 aa13.77□□□□□ -0.2
CLIP1-212ENST00000540304 PLXNC1O60486 1568 aa13.77□□□□□ -0.2
CLIP1-212ENST00000540304 FOXD1Q16676 465 aa13.77□□□□□ -0.21
CLIP1-212ENST00000540304 RPRD2Q5VT52 1461 aaKnown RBP13.77□□□□□ -0.21
CLIP1-212ENST00000540304 EFCAB2Q5VUJ9 269 aa13.77□□□□□ -0.21
CLIP1-212ENST00000540304 EIF5BO60841 1220 aaKnown RBP13.76□□□□□ -0.21
CLIP1-212ENST00000540304 ABCA9Q8IUA7 1624 aa13.76□□□□□ -0.21
CLIP1-212ENST00000540304 MIER1Q8N108 512 aa13.76□□□□□ -0.21
CLIP1-212ENST00000540304 ARHGEF12Q9NZN5 1544 aa13.75□□□□□ -0.21
CLIP1-212ENST00000540304 GTF3C3Q9Y5Q9 886 aa13.75□□□□□ -0.21
CLIP1-212ENST00000540304 HIRIP3Q9BW71 556 aaPredicted RBP13.73□□□□□ -0.21
CLIP1-212ENST00000540304 ASXL2Q76L83 1435 aa13.73□□□□□ -0.21
CLIP1-212ENST00000540304 NUP155O75694 1391 aa13.73□□□□□ -0.21
CLIP1-212ENST00000540304 YTHDC1Q96MU7 727 aaKnown RBP13.72□□□□□ -0.21
CLIP1-212ENST00000540304 TEX14Q8IWB6 1497 aa13.71□□□□□ -0.21
CLIP1-212ENST00000540304 UNC13BO14795 1591 aa13.71□□□□□ -0.21
CLIP1-212ENST00000540304 PKD2Q13563 968 aa13.71□□□□□ -0.22
CLIP1-212ENST00000540304 DUOX2Q9NRD8 1548 aa13.7□□□□□ -0.22
CLIP1-212ENST00000540304 L3MBTL2Q969R5 705 aa13.69□□□□□ -0.22
CLIP1-212ENST00000540304 TRAPPC8Q9Y2L5 1435 aa13.69□□□□□ -0.22
CLIP1-212ENST00000540304 FANCAO15360 1455 aa13.68□□□□□ -0.22
CLIP1-212ENST00000540304 FAM135AQ9P2D6 1515 aa13.68□□□□□ -0.22
CLIP1-212ENST00000540304 NPM1P06748 294 aaKnown RBP eCLIP13.68□□□□□ -0.22
CLIP1-212ENST00000540304 ANP32EQ9BTT0 268 aa13.68□□□□□ -0.22
CLIP1-212ENST00000540304 ERBINQ96RT1 1412 aa13.68□□□□□ -0.22
CLIP1-212ENST00000540304 PLEKHG5O94827 1062 aa13.66□□□□□ -0.22
CLIP1-212ENST00000540304 RTEL1-TNFRSF6BF6WH68 1400 aa13.66□□□□□ -0.22
CLIP1-212ENST00000540304 ZFYVE16Q7Z3T8 1539 aa13.66□□□□□ -0.22
CLIP1-212ENST00000540304 IQGAP3Q86VI3 1631 aa13.66□□□□□ -0.22
CLIP1-212ENST00000540304 MAGI2Q86UL8 1455 aa13.64□□□□□ -0.23
CLIP1-212ENST00000540304 INO80Q9ULG1 1556 aaPredicted RBP13.64□□□□□ -0.23
CLIP1-212ENST00000540304 ADGRL1O94910 1474 aa13.63□□□□□ -0.23
CLIP1-212ENST00000540304 SPAG9O60271 1321 aaKnown RBP13.63□□□□□ -0.23
CLIP1-212ENST00000540304 CFAP74Q9C0B2 1584 aa13.62□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms