RNA–Protein interactions for RNA: ENST00000534106.2

CHMP4A-208, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 5

Gene CHMP4A, Length 370 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-208ENST00000534106 HOXB1P14653 301 aaPredicted RBP6.7□□□□□ -1.34
CHMP4A-208ENST00000534106 POTEB3A0JP26 581 aa6.69□□□□□ -1.34
CHMP4A-208ENST00000534106 NLRP6P59044 892 aa6.69□□□□□ -1.34
CHMP4A-208ENST00000534106 POTEBQ6S5H4 581 aa6.69□□□□□ -1.34
CHMP4A-208ENST00000534106 BCL11BQ9C0K0 894 aaPredicted RBP6.69□□□□□ -1.34
CHMP4A-208ENST00000534106 STK25O00506 426 aa6.67□□□□□ -1.34
CHMP4A-208ENST00000534106 MS4A4AQ96JQ5 239 aa6.67□□□□□ -1.34
CHMP4A-208ENST00000534106 TMEM92Q6UXU6 159 aa6.66□□□□□ -1.34
CHMP4A-208ENST00000534106 KRTAP3-3Q9BYR6 98 aa6.66□□□□□ -1.34
CHMP4A-208ENST00000534106 KRTAP3-2Q9BYR7 98 aa6.66□□□□□ -1.34
CHMP4A-208ENST00000534106 VARS2Q5ST30 1063 aaKnown RBP6.65□□□□□ -1.34
CHMP4A-208ENST00000534106 ZSWIM6Q9HCJ5 1215 aa6.64□□□□□ -1.35
CHMP4A-208ENST00000534106 RB1CC1Q8TDY2 1594 aa6.64□□□□□ -1.35
CHMP4A-208ENST00000534106 ARSIQ5FYB1 569 aa6.6□□□□□ -1.35
CHMP4A-208ENST00000534106 GPR153Q6NV75 609 aa6.6□□□□□ -1.35
CHMP4A-208ENST00000534106 FBXO22Q8NEZ5 403 aa6.6□□□□□ -1.35
CHMP4A-208ENST00000534106 MFRPQ9BY79 579 aa6.6□□□□□ -1.35
CHMP4A-208ENST00000534106 RGL2O15211 777 aa6.59□□□□□ -1.35
CHMP4A-208ENST00000534106 ZNF687Q8N1G0 1237 aa6.58□□□□□ -1.36
CHMP4A-208ENST00000534106 PKD2Q13563 968 aa6.57□□□□□ -1.36
CHMP4A-208ENST00000534106 C2orf72A6NCS6 295 aa6.56□□□□□ -1.36
CHMP4A-208ENST00000534106 TMC2Q8TDI7 906 aa6.56□□□□□ -1.36
CHMP4A-208ENST00000534106 KHSRPQ92945 711 aaKnown RBP eCLIP6.56□□□□□ -1.36
CHMP4A-208ENST00000534106 RNF166Q96A37 237 aaPredicted RBP6.56□□□□□ -1.36
CHMP4A-208ENST00000534106 CECR2Q9BXF3 1484 aa6.55□□□□□ -1.36
CHMP4A-208ENST00000534106 ZNF316A6NFI3 1004 aaPredicted RBP6.55□□□□□ -1.36
CHMP4A-208ENST00000534106 ANKRD13DQ6ZTN6 518 aa6.55□□□□□ -1.36
CHMP4A-208ENST00000534106 MYT1LQ9UL68 1186 aa6.54□□□□□ -1.36
CHMP4A-208ENST00000534106 NUDT7P0C024 238 aa6.53□□□□□ -1.36
CHMP4A-208ENST00000534106 NACADO15069 1562 aa6.52□□□□□ -1.36
CHMP4A-208ENST00000534106 BICRAQ9NZM4 1560 aa6.52□□□□□ -1.37
CHMP4A-208ENST00000534106 KIF3CO14782 793 aa6.5□□□□□ -1.37
CHMP4A-208ENST00000534106 PCDHGA4Q9Y5G9 962 aa6.5□□□□□ -1.37
CHMP4A-208ENST00000534106 PPP1R37O75864 691 aa6.49□□□□□ -1.37
CHMP4A-208ENST00000534106 PTGER2P43116 358 aa6.49□□□□□ -1.37
CHMP4A-208ENST00000534106 LHX6Q9UPM6 363 aa6.49□□□□□ -1.37
CHMP4A-208ENST00000534106 SLC34A2O95436 690 aa6.46□□□□□ -1.38
CHMP4A-208ENST00000534106 CHGAP10645 457 aaKnown RBP6.46□□□□□ -1.38
CHMP4A-208ENST00000534106 LSM11P83369 360 aaKnown RBP eCLIP6.46□□□□□ -1.38
CHMP4A-208ENST00000534106 AXIN2Q9Y2T1 843 aa6.46□□□□□ -1.38
CHMP4A-208ENST00000534106 CC2D2AQ9P2K1 1620 aa6.46□□□□□ -1.38
CHMP4A-208ENST00000534106 PBX2P40425 430 aa6.45□□□□□ -1.38
CHMP4A-208ENST00000534106 TBC1D12O60347 775 aa6.43□□□□□ -1.38
CHMP4A-208ENST00000534106 PLPP6Q8IY26 295 aa6.43□□□□□ -1.38
CHMP4A-208ENST00000534106 HS6ST3Q8IZP7 471 aa6.43□□□□□ -1.38
CHMP4A-208ENST00000534106 UNC13AQ9UPW8 1703 aa6.42□□□□□ -1.38
CHMP4A-208ENST00000534106 PSDA5PKW4 1024 aaPredicted RBP6.42□□□□□ -1.38
CHMP4A-208ENST00000534106 FOXK1P85037 733 aa6.41□□□□□ -1.38
CHMP4A-208ENST00000534106 GPHNQ9NQX3 736 aaPredicted RBP6.41□□□□□ -1.38
CHMP4A-208ENST00000534106 ARHGAP33O14559 1287 aa6.4□□□□□ -1.38
CHMP4A-208ENST00000534106 STAC3Q96MF2 364 aa6.4□□□□□ -1.38
CHMP4A-208ENST00000534106 DSG2Q14126 1118 aa6.39□□□□□ -1.39
CHMP4A-208ENST00000534106 POTEEQ6S8J3 1075 aa6.39□□□□□ -1.39
CHMP4A-208ENST00000534106 PTCD2Q8WV60 388 aaKnown RBP6.39□□□□□ -1.39
CHMP4A-208ENST00000534106 KCNH8Q96L42 1107 aa6.39□□□□□ -1.39
CHMP4A-208ENST00000534106 RYDENQ9NUL5 291 aaKnown RBP6.39□□□□□ -1.39
CHMP4A-208ENST00000534106 PPP4R3BQ5MIZ7 849 aa6.38□□□□□ -1.39
CHMP4A-208ENST00000534106 ADGRD1Q6QNK2 874 aa6.37□□□□□ -1.39
CHMP4A-208ENST00000534106 UPF1Q92900 1129 aaKnown RBP eCLIP6.37□□□□□ -1.39
CHMP4A-208ENST00000534106 EIF4G1Q04637 1599 aaKnown RBP6.36□□□□□ -1.39
CHMP4A-208ENST00000534106 PSEN2P49810 448 aa6.36□□□□□ -1.39
CHMP4A-208ENST00000534106 HCSTQ9UBK5 93 aa6.35□□□□□ -1.39
CHMP4A-208ENST00000534106 DMRTA1Q5VZB9 504 aa6.34□□□□□ -1.39
CHMP4A-208ENST00000534106 PDE4AP27815 886 aa6.33□□□□□ -1.4
CHMP4A-208ENST00000534106 NKX1-1Q15270 411 aaPredicted RBP6.33□□□□□ -1.4
CHMP4A-208ENST00000534106 KCNK17Q96T54 332 aa6.33□□□□□ -1.4
CHMP4A-208ENST00000534106 KDM4FA0A1W2PPD8 638 aa6.32□□□□□ -1.4
CHMP4A-208ENST00000534106 TK2O00142 265 aa6.32□□□□□ -1.4
CHMP4A-208ENST00000534106 PPP1R15BQ5SWA1 713 aa6.32□□□□□ -1.4
CHMP4A-208ENST00000534106 ZNF454Q8N9F8 522 aa6.32□□□□□ -1.4
CHMP4A-208ENST00000534106 PLA2G2EQ9NZK7 142 aa6.32□□□□□ -1.4
CHMP4A-208ENST00000534106 MYO15BQ96JP2 1530 aa6.31□□□□□ -1.4
CHMP4A-208ENST00000534106 KCTD12Q96CX2 325 aaKnown RBP6.31□□□□□ -1.4
CHMP4A-208ENST00000534106 SCRIBQ14160 1630 aa6.3□□□□□ -1.4
CHMP4A-208ENST00000534106 OXER1Q8TDS5 423 aa6.3□□□□□ -1.4
CHMP4A-208ENST00000534106 HRO43593 1189 aa6.28□□□□□ -1.4
CHMP4A-208ENST00000534106 LARP6Q9BRS8 491 aaKnown RBP6.28□□□□□ -1.4
CHMP4A-208ENST00000534106 CRISPLD2Q9H0B8 497 aa6.28□□□□□ -1.4
CHMP4A-208ENST00000534106 GOLGA8CPA6NN73 597 aa6.27□□□□□ -1.41
CHMP4A-208ENST00000534106 PTPREP23469 700 aa6.27□□□□□ -1.41
CHMP4A-208ENST00000534106 PTPN5P54829 565 aa6.27□□□□□ -1.41
CHMP4A-208ENST00000534106 MAP3K9P80192 1104 aa6.27□□□□□ -1.41
CHMP4A-208ENST00000534106 EVI5O60447 810 aa6.26□□□□□ -1.41
CHMP4A-208ENST00000534106 DDX27Q96GQ7 796 aaKnown RBP6.26□□□□□ -1.41
CHMP4A-208ENST00000534106 CUX2O14529 1486 aa6.26□□□□□ -1.41
CHMP4A-208ENST00000534106 BCL2L12Q9HB09 334 aa6.25□□□□□ -1.41
CHMP4A-208ENST00000534106 VPS9D1Q9Y2B5 631 aa6.25□□□□□ -1.41
CHMP4A-208ENST00000534106 ERCC6Q03468 1493 aa6.25□□□□□ -1.41
CHMP4A-208ENST00000534106 SHROOM4Q9ULL8 1493 aa6.25□□□□□ -1.41
CHMP4A-208ENST00000534106 NCKAP5LQ9HCH0 1330 aa6.25□□□□□ -1.41
CHMP4A-208ENST00000534106 GTPBP6O43824 516 aaPredicted RBP6.24□□□□□ -1.41
CHMP4A-208ENST00000534106 FOSBP53539 338 aa6.23□□□□□ -1.41
CHMP4A-208ENST00000534106 MRPL50Q8N5N7 158 aaKnown RBP6.23□□□□□ -1.41
CHMP4A-208ENST00000534106 ZDHHC16Q969W1 377 aa6.23□□□□□ -1.41
CHMP4A-208ENST00000534106 JPH4Q96JJ6 628 aa6.22□□□□□ -1.41
CHMP4A-208ENST00000534106 WNT2BQ93097 391 aa6.2□□□□□ -1.42
CHMP4A-208ENST00000534106 SLC4A5Q9BY07 1137 aa6.2□□□□□ -1.42
CHMP4A-208ENST00000534106 ADAM33Q9BZ11 813 aa6.2□□□□□ -1.42
CHMP4A-208ENST00000534106 NBPF3Q9H094 633 aa6.2□□□□□ -1.42
CHMP4A-208ENST00000534106 ANO8Q9HCE9 1232 aaPredicted RBP6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms