RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 MLLT3P42568 568 aaPredicted RBP14.93□□□□□ -0.02
LSM1-202ENST00000520286 DPY19L2Q6NUT2 758 aa14.92□□□□□ -0.02
LSM1-202ENST00000520286 BARGINQ6ZT62 677 aa14.92□□□□□ -0.02
LSM1-202ENST00000520286 RBM26Q5T8P6 1007 aaKnown RBP14.91□□□□□ -0.02
LSM1-202ENST00000520286 GALR2O43603 387 aaPredicted RBP14.9□□□□□ -0.02
LSM1-202ENST00000520286 DSG2Q14126 1118 aa14.89□□□□□ -0.03
LSM1-202ENST00000520286 GPIHBP1Q8IV16 184 aa14.89□□□□□ -0.03
LSM1-202ENST00000520286 DPYSL4O14531 572 aa14.88□□□□□ -0.03
LSM1-202ENST00000520286 MICALL2Q8IY33 904 aa14.88□□□□□ -0.03
LSM1-202ENST00000520286 EMILIN3Q9NT22 766 aa14.88□□□□□ -0.03
LSM1-202ENST00000520286 TMC2Q8TDI7 906 aa14.86□□□□□ -0.03
LSM1-202ENST00000520286 SPDYE16A6NNV3 312 aaPredicted RBP14.85□□□□□ -0.03
LSM1-202ENST00000520286 C14orf37Q86TY3 774 aa14.84□□□□□ -0.03
LSM1-202ENST00000520286 FOXK1P85037 733 aa14.83□□□□□ -0.04
LSM1-202ENST00000520286 PDIA6Q15084 440 aa14.83□□□□□ -0.04
LSM1-202ENST00000520286 PDCD7Q8N8D1 485 aaKnown RBP14.83□□□□□ -0.04
LSM1-202ENST00000520286 KRI1Q8N9T8 703 aaKnown RBP14.81□□□□□ -0.04
LSM1-202ENST00000520286 AK7Q96M32 723 aa14.81□□□□□ -0.04
LSM1-202ENST00000520286 CLCN6P51797 869 aa14.8□□□□□ -0.04
LSM1-202ENST00000520286 ATN1P54259 1190 aaPredicted RBP14.78□□□□□ -0.04
LSM1-202ENST00000520286 IRX5P78411 483 aaPredicted RBP14.76□□□□□ -0.05
LSM1-202ENST00000520286 PLPP6Q8IY26 295 aa14.76□□□□□ -0.05
LSM1-202ENST00000520286 TMEM121BQ9BXQ6 578 aaPredicted RBP14.76□□□□□ -0.05
LSM1-202ENST00000520286 BOLA1Q9Y3E2 137 aa14.76□□□□□ -0.05
LSM1-202ENST00000520286 OCEL1Q9H607 264 aa14.75□□□□□ -0.05
LSM1-202ENST00000520286 G3V3G9 751 aa14.74□□□□□ -0.05
LSM1-202ENST00000520286 HAX1O00165 279 aa14.74□□□□□ -0.05
LSM1-202ENST00000520286 C2orf72A6NCS6 295 aa14.73□□□□□ -0.05
LSM1-202ENST00000520286 ATMINO43313 823 aaPredicted RBP14.72□□□□□ -0.05
LSM1-202ENST00000520286 IER5LQ5T953 404 aa14.72□□□□□ -0.05
LSM1-202ENST00000520286 KIF3CO14782 793 aa14.7□□□□□ -0.06
LSM1-202ENST00000520286 GPBP1L1Q9HC44 474 aaPredicted RBP14.7□□□□□ -0.06
LSM1-202ENST00000520286 EVX2Q03828 476 aa14.69□□□□□ -0.06
LSM1-202ENST00000520286 ASTLQ6HA08 431 aaPredicted RBP14.69□□□□□ -0.06
LSM1-202ENST00000520286 MAP3K9P80192 1104 aa14.68□□□□□ -0.06
LSM1-202ENST00000520286 TRIM66O15016 1216 aa14.66□□□□□ -0.06
LSM1-202ENST00000520286 GRXCR2A6NFK2 248 aa14.65□□□□□ -0.06
LSM1-202ENST00000520286 PLCG2P16885 1265 aa14.65□□□□□ -0.06
LSM1-202ENST00000520286 DAXXQ9UER7 740 aaPredicted RBP14.65□□□□□ -0.06
LSM1-202ENST00000520286 GPR37O15354 613 aa14.64□□□□□ -0.07
LSM1-202ENST00000520286 PDE4DQ08499 809 aa14.63□□□□□ -0.07
LSM1-202ENST00000520286 KDM4CQ9H3R0 1056 aa14.63□□□□□ -0.07
LSM1-202ENST00000520286 L3MBTL3Q96JM7 780 aaPredicted RBP14.62□□□□□ -0.07
LSM1-202ENST00000520286 UPF1Q92900 1129 aaKnown RBP eCLIP14.61□□□□□ -0.07
LSM1-202ENST00000520286 IL27Q8NEV9 243 aa14.6□□□□□ -0.07
LSM1-202ENST00000520286 NUTM2FA1L443 756 aa14.59□□□□□ -0.07
LSM1-202ENST00000520286 TMEM92Q6UXU6 159 aa14.56□□□□□ -0.08
LSM1-202ENST00000520286 OSBPP22059 807 aa14.55□□□□□ -0.08
LSM1-202ENST00000520286 OXER1Q8TDS5 423 aa14.55□□□□□ -0.08
LSM1-202ENST00000520286 MINK1Q8N4C8 1332 aaPredicted RBP14.55□□□□□ -0.08
LSM1-202ENST00000520286 PTGER2P43116 358 aa14.54□□□□□ -0.08
LSM1-202ENST00000520286 ARXQ96QS3 562 aa14.54□□□□□ -0.08
LSM1-202ENST00000520286 SEC24BO95487 1268 aa14.52□□□□□ -0.09
LSM1-202ENST00000520286 MAP2K5Q13163 448 aa14.52□□□□□ -0.09
LSM1-202ENST00000520286 TBC1D12O60347 775 aa14.51□□□□□ -0.09
LSM1-202ENST00000520286 DDX12PQ92771 950 aa14.51□□□□□ -0.09
LSM1-202ENST00000520286 CCDC102AQ96A19 550 aa14.5□□□□□ -0.09
LSM1-202ENST00000520286 GNPATO15228 680 aa14.49□□□□□ -0.09
LSM1-202ENST00000520286 IRF6O14896 467 aa14.48□□□□□ -0.09
LSM1-202ENST00000520286 COLQQ9Y215 455 aaPredicted RBP14.48□□□□□ -0.09
LSM1-202ENST00000520286 EVI5O60447 810 aa14.47□□□□□ -0.09
LSM1-202ENST00000520286 FCHSD2O94868 740 aa14.47□□□□□ -0.09
LSM1-202ENST00000520286 HIC1Q14526 733 aa14.47□□□□□ -0.09
LSM1-202ENST00000520286 GABBR2O75899 941 aa14.45□□□□□ -0.1
LSM1-202ENST00000520286 PELP1Q8IZL8 1130 aaKnown RBP14.45□□□□□ -0.1
LSM1-202ENST00000520286 FAM117AQ9C073 453 aa14.44□□□□□ -0.1
LSM1-202ENST00000520286 AMHR2Q16671 573 aa14.43□□□□□ -0.1
LSM1-202ENST00000520286 DCBLD2Q96PD2 775 aa14.43□□□□□ -0.1
LSM1-202ENST00000520286 FECHP22830 423 aa14.42□□□□□ -0.1
LSM1-202ENST00000520286 ZNF316A6NFI3 1004 aaPredicted RBP14.41□□□□□ -0.1
LSM1-202ENST00000520286 SUPT5HO00267 1087 aaKnown RBP14.4□□□□□ -0.1
LSM1-202ENST00000520286 PRIM1P49642 420 aaKnown RBP14.4□□□□□ -0.1
LSM1-202ENST00000520286 SLC39A7Q92504 469 aa14.4□□□□□ -0.1
LSM1-202ENST00000520286 PTCD2Q8WV60 388 aaKnown RBP14.39□□□□□ -0.11
LSM1-202ENST00000520286 PARP9Q8IXQ6 854 aa14.38□□□□□ -0.11
LSM1-202ENST00000520286 DDRGK1Q96HY6 314 aa14.38□□□□□ -0.11
LSM1-202ENST00000520286 PTGDRQ13258 359 aa14.37□□□□□ -0.11
LSM1-202ENST00000520286 C3orf67Q6ZVT6 689 aa14.36□□□□□ -0.11
LSM1-202ENST00000520286 POTEFA5A3E0 1075 aa14.35□□□□□ -0.11
LSM1-202ENST00000520286 C7P10643 843 aa14.35□□□□□ -0.11
LSM1-202ENST00000520286 PLEKHG3A1L390 1219 aa14.34□□□□□ -0.11
LSM1-202ENST00000520286 HOMEZQ8IX15 550 aa14.33□□□□□ -0.12
LSM1-202ENST00000520286 ANO8Q9HCE9 1232 aaPredicted RBP14.33□□□□□ -0.12
LSM1-202ENST00000520286 SLC34A2O95436 690 aa14.32□□□□□ -0.12
LSM1-202ENST00000520286 TTLL12Q14166 644 aaPredicted RBP14.32□□□□□ -0.12
LSM1-202ENST00000520286 METRNQ9UJH8 293 aa14.3□□□□□ -0.12
LSM1-202ENST00000520286 PHF14O94880 888 aa14.28□□□□□ -0.12
LSM1-202ENST00000520286 EN1Q05925 392 aaPredicted RBP14.28□□□□□ -0.12
LSM1-202ENST00000520286 ZMYND15Q9H091 742 aa14.28□□□□□ -0.12
LSM1-202ENST00000520286 EPAS1Q99814 870 aa14.27□□□□□ -0.13
LSM1-202ENST00000520286 CDHR5Q9HBB8 845 aa14.27□□□□□ -0.13
LSM1-202ENST00000520286 MAP3K7O43318 606 aa14.24□□□□□ -0.13
LSM1-202ENST00000520286 GIGYF2Q6Y7W6 1299 aaKnown RBP14.24□□□□□ -0.13
LSM1-202ENST00000520286 NPDC1Q9NQX5 325 aaPredicted RBP14.24□□□□□ -0.13
LSM1-202ENST00000520286 RBM33Q96EV2 1170 aaKnown RBP14.22□□□□□ -0.13
LSM1-202ENST00000520286 GOPCQ9HD26 462 aa14.21□□□□□ -0.13
LSM1-202ENST00000520286 PCDHGA10Q9Y5H3 936 aa14.21□□□□□ -0.13
LSM1-202ENST00000520286 MS4A1P11836 297 aa14.2□□□□□ -0.14
LSM1-202ENST00000520286 SLAIN1Q8ND83 568 aa14.19□□□□□ -0.14
LSM1-202ENST00000520286 REPIN1Q9BWE0 567 aaKnown RBP14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms