RNA–Protein interactions for RNA: ENST00000519132.5

CLK4-202, Transcript of CDC like kinase 4, humanhuman

TSL 1 (best)

Gene CLK4, Length 3,129 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK4-202ENST00000519132 CABP2Q9NPB3 220 aa11.91□□□□□ -0.5
CLK4-202ENST00000519132 PDIA4P13667 645 aaKnown RBP11.91□□□□□ -0.5
CLK4-202ENST00000519132 CHADLQ6NUI6 762 aa11.9□□□□□ -0.5
CLK4-202ENST00000519132 ZNF428Q96B54 188 aa11.89□□□□□ -0.51
CLK4-202ENST00000519132 SHROOM4Q9ULL8 1493 aa11.87□□□□□ -0.51
CLK4-202ENST00000519132 LOC105371045A0A1W2PR82 267 aa11.86□□□□□ -0.51
CLK4-202ENST00000519132 SPDYE1Q8NFV5 336 aaPredicted RBP11.86□□□□□ -0.51
CLK4-202ENST00000519132 MS4A4AQ96JQ5 239 aa11.86□□□□□ -0.51
CLK4-202ENST00000519132 ONECUT3O60422 494 aaPredicted RBP11.85□□□□□ -0.51
CLK4-202ENST00000519132 ZNF467Q7Z7K2 595 aaPredicted RBP11.84□□□□□ -0.51
CLK4-202ENST00000519132 ZBTB7CA1YPR0 619 aa11.84□□□□□ -0.51
CLK4-202ENST00000519132 CCDC9Q9Y3X0 531 aaKnown RBP11.83□□□□□ -0.52
CLK4-202ENST00000519132 GPR37O15354 613 aa11.83□□□□□ -0.52
CLK4-202ENST00000519132 DDX27Q96GQ7 796 aaKnown RBP11.83□□□□□ -0.52
CLK4-202ENST00000519132 SMYD5Q6GMV2 418 aa11.82□□□□□ -0.52
CLK4-202ENST00000519132 IFNL1Q8IU54 200 aa11.81□□□□□ -0.52
CLK4-202ENST00000519132 CRISPLD2Q9H0B8 497 aa11.81□□□□□ -0.52
CLK4-202ENST00000519132 FECHP22830 423 aa11.81□□□□□ -0.52
CLK4-202ENST00000519132 PARP9Q8IXQ6 854 aa11.81□□□□□ -0.52
CLK4-202ENST00000519132 ZNF777Q9ULD5 760 aaPredicted RBP11.81□□□□□ -0.52
CLK4-202ENST00000519132 DPYSL4O14531 572 aa11.8□□□□□ -0.52
CLK4-202ENST00000519132 KCTD17Q8N5Z5 321 aa11.79□□□□□ -0.52
CLK4-202ENST00000519132 POM121Q96HA1 1249 aa11.79□□□□□ -0.52
CLK4-202ENST00000519132 AEBP1Q8IUX7 1158 aa11.78□□□□□ -0.52
CLK4-202ENST00000519132 BICRAQ9NZM4 1560 aa11.77□□□□□ -0.53
CLK4-202ENST00000519132 MFSD10Q14728 455 aa11.76□□□□□ -0.53
CLK4-202ENST00000519132 CCDC102AQ96A19 550 aa11.76□□□□□ -0.53
CLK4-202ENST00000519132 EMILIN3Q9NT22 766 aa11.76□□□□□ -0.53
CLK4-202ENST00000519132 TRAK2O60296 914 aa11.74□□□□□ -0.53
CLK4-202ENST00000519132 CCDC61Q9Y6R9 512 aa11.74□□□□□ -0.53
CLK4-202ENST00000519132 CAMK2BQ13554 666 aa11.74□□□□□ -0.53
CLK4-202ENST00000519132 NLRP6P59044 892 aa11.73□□□□□ -0.53
CLK4-202ENST00000519132 REM2Q8IYK8 340 aaPredicted RBP11.73□□□□□ -0.53
CLK4-202ENST00000519132 FOXD4L5Q5VV16 416 aaPredicted RBP11.72□□□□□ -0.53
CLK4-202ENST00000519132 FOXD4L4Q8WXT5 416 aaPredicted RBP11.72□□□□□ -0.53
CLK4-202ENST00000519132 RAD21O60216 631 aa11.71□□□□□ -0.53
CLK4-202ENST00000519132 PDE4AP27815 886 aa11.71□□□□□ -0.53
CLK4-202ENST00000519132 IGSF3O75054 1194 aa11.7□□□□□ -0.54
CLK4-202ENST00000519132 REPIN1Q9BWE0 567 aaKnown RBP11.7□□□□□ -0.54
CLK4-202ENST00000519132 MAP3K13O43283 966 aa11.69□□□□□ -0.54
CLK4-202ENST00000519132 MTMR7Q9Y216 660 aa11.69□□□□□ -0.54
CLK4-202ENST00000519132 PITPNM1O00562 1244 aa11.68□□□□□ -0.54
CLK4-202ENST00000519132 MS4A1P11836 297 aa11.67□□□□□ -0.54
CLK4-202ENST00000519132 ARIH1Q9Y4X5 557 aaPredicted RBP11.67□□□□□ -0.54
CLK4-202ENST00000519132 MCM6Q14566 821 aa11.66□□□□□ -0.54
CLK4-202ENST00000519132 GRXCR2A6NFK2 248 aa11.64□□□□□ -0.55
CLK4-202ENST00000519132 TTLL12Q14166 644 aaPredicted RBP11.64□□□□□ -0.55
CLK4-202ENST00000519132 NUTM2FA1L443 756 aa11.64□□□□□ -0.55
CLK4-202ENST00000519132 RETREG2Q8NC44 543 aa11.63□□□□□ -0.55
CLK4-202ENST00000519132 FLIIQ13045 1269 aa11.62□□□□□ -0.55
CLK4-202ENST00000519132 DDRGK1Q96HY6 314 aa11.62□□□□□ -0.55
CLK4-202ENST00000519132 ZNF579Q8NAF0 562 aaKnown RBP11.62□□□□□ -0.55
CLK4-202ENST00000519132 IRF5Q13568 498 aa11.62□□□□□ -0.55
CLK4-202ENST00000519132 PPP1R15BQ5SWA1 713 aa11.62□□□□□ -0.55
CLK4-202ENST00000519132 IRF6O14896 467 aa11.61□□□□□ -0.55
CLK4-202ENST00000519132 SOX12O15370 315 aa11.59□□□□□ -0.55
CLK4-202ENST00000519132 RGS22Q8NE09 1264 aa11.59□□□□□ -0.55
CLK4-202ENST00000519132 DSG2Q14126 1118 aa11.58□□□□□ -0.56
CLK4-202ENST00000519132 AKT1S1Q96B36 256 aa11.58□□□□□ -0.56
CLK4-202ENST00000519132 GIGYF2Q6Y7W6 1299 aaKnown RBP11.57□□□□□ -0.56
CLK4-202ENST00000519132 A6NJR5 290 aa11.56□□□□□ -0.56
CLK4-202ENST00000519132 PRIM1P49642 420 aaKnown RBP11.56□□□□□ -0.56
CLK4-202ENST00000519132 AMHR2Q16671 573 aa11.56□□□□□ -0.56
CLK4-202ENST00000519132 TRPC6Q9Y210 931 aa11.56□□□□□ -0.56
CLK4-202ENST00000519132 CARNS1A5YM72 827 aa11.56□□□□□ -0.56
CLK4-202ENST00000519132 MAP2K5Q13163 448 aa11.56□□□□□ -0.56
CLK4-202ENST00000519132 PDIA6Q15084 440 aa11.56□□□□□ -0.56
CLK4-202ENST00000519132 NLRP7Q8WX94 980 aa11.56□□□□□ -0.56
CLK4-202ENST00000519132 GZF1Q9H116 711 aaPredicted RBP11.56□□□□□ -0.56
CLK4-202ENST00000519132 FARP1Q9Y4F1 1045 aaPredicted RBP11.56□□□□□ -0.56
CLK4-202ENST00000519132 RBM25P49756 843 aaKnown RBP11.55□□□□□ -0.56
CLK4-202ENST00000519132 PROCA1Q8NCQ7 364 aaPredicted RBP11.55□□□□□ -0.56
CLK4-202ENST00000519132 FBXO31Q5XUX0 539 aaPredicted RBP11.55□□□□□ -0.56
CLK4-202ENST00000519132 PROSER2Q86WR7 435 aaPredicted RBP11.55□□□□□ -0.56
CLK4-202ENST00000519132 FNBP4Q8N3X1 1017 aaPredicted RBP11.55□□□□□ -0.56
CLK4-202ENST00000519132 BAZ1AQ9NRL2 1556 aaPredicted RBP11.54□□□□□ -0.56
CLK4-202ENST00000519132 MINK1Q8N4C8 1332 aaPredicted RBP11.53□□□□□ -0.56
CLK4-202ENST00000519132 CECR2Q9BXF3 1484 aa11.52□□□□□ -0.57
CLK4-202ENST00000519132 KIF12Q96FN5 646 aa11.5□□□□□ -0.57
CLK4-202ENST00000519132 DDX12PQ92771 950 aa11.5□□□□□ -0.57
CLK4-202ENST00000519132 SMARCA4P51532 1647 aa11.5□□□□□ -0.57
CLK4-202ENST00000519132 MFAP1P55081 439 aaKnown RBP11.49□□□□□ -0.57
CLK4-202ENST00000519132 PHOX2BQ99453 314 aa11.49□□□□□ -0.57
CLK4-202ENST00000519132 POLR3EQ9NVU0 708 aa11.49□□□□□ -0.57
CLK4-202ENST00000519132 GPHNQ9NQX3 736 aaPredicted RBP11.48□□□□□ -0.57
CLK4-202ENST00000519132 DPY19L2Q6NUT2 758 aa11.48□□□□□ -0.57
CLK4-202ENST00000519132 OXER1Q8TDS5 423 aa11.48□□□□□ -0.57
CLK4-202ENST00000519132 TRAIPQ9BWF2 469 aa11.48□□□□□ -0.57
CLK4-202ENST00000519132 GNPATO15228 680 aa11.47□□□□□ -0.57
CLK4-202ENST00000519132 MROH2BQ7Z745 1585 aa11.47□□□□□ -0.57
CLK4-202ENST00000519132 RSF1Q96T23 1441 aaPredicted RBP11.47□□□□□ -0.57
CLK4-202ENST00000519132 OSBPP22059 807 aa11.46□□□□□ -0.57
CLK4-202ENST00000519132 ATP1B4Q9UN42 357 aaPredicted RBP11.46□□□□□ -0.57
CLK4-202ENST00000519132 TMCO4Q5TGY1 634 aa11.46□□□□□ -0.58
CLK4-202ENST00000519132 FAM161AQ3B820 660 aa11.45□□□□□ -0.58
CLK4-202ENST00000519132 CCDC97Q96F63 343 aaPredicted RBP11.45□□□□□ -0.58
CLK4-202ENST00000519132 SNRKQ9NRH2 765 aa11.45□□□□□ -0.58
CLK4-202ENST00000519132 UPF1Q92900 1129 aaKnown RBP eCLIP11.44□□□□□ -0.58
CLK4-202ENST00000519132 PCMTD1Q96MG8 357 aaPredicted RBP11.44□□□□□ -0.58
CLK4-202ENST00000519132 PLSCR2Q9NRY7 297 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 7.5 ms