RNA–Protein interactions for RNA: ENST00000514313.1

NUP54-215, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-215ENST00000514313 NEUROD2Q15784 382 aa15.09■□□□□ 0.01
NUP54-215ENST00000514313 MLLT3P42568 568 aaPredicted RBP15.08■□□□□ 0
NUP54-215ENST00000514313 DPY19L2Q6NUT2 758 aa15.08■□□□□ 0
NUP54-215ENST00000514313 MICALL2Q8IY33 904 aa15.05■□□□□ -0
NUP54-215ENST00000514313 DSG2Q14126 1118 aa15.04■□□□□ -0
NUP54-215ENST00000514313 RBM26Q5T8P6 1007 aaKnown RBP15.04■□□□□ -0
NUP54-215ENST00000514313 EMILIN3Q9NT22 766 aa15.04■□□□□ -0
NUP54-215ENST00000514313 DPYSL4O14531 572 aa15.03■□□□□ -0
NUP54-215ENST00000514313 BARGINQ6ZT62 677 aa15.02■□□□□ -0
NUP54-215ENST00000514313 PDCD7Q8N8D1 485 aaKnown RBP15.02■□□□□ -0
NUP54-215ENST00000514313 GPIHBP1Q8IV16 184 aa15□□□□□ -0.01
NUP54-215ENST00000514313 PDIA6Q15084 440 aa14.98□□□□□ -0.01
NUP54-215ENST00000514313 ERICH6Q7L0X2 663 aa14.98□□□□□ -0.01
NUP54-215ENST00000514313 TMC2Q8TDI7 906 aa14.97□□□□□ -0.01
NUP54-215ENST00000514313 ATN1P54259 1190 aaPredicted RBP14.96□□□□□ -0.01
NUP54-215ENST00000514313 FOXK1P85037 733 aa14.96□□□□□ -0.01
NUP54-215ENST00000514313 SPDYE16A6NNV3 312 aaPredicted RBP14.94□□□□□ -0.02
NUP54-215ENST00000514313 IRX5P78411 483 aaPredicted RBP14.93□□□□□ -0.02
NUP54-215ENST00000514313 EVX2Q03828 476 aa14.91□□□□□ -0.02
NUP54-215ENST00000514313 PLPP6Q8IY26 295 aa14.9□□□□□ -0.02
NUP54-215ENST00000514313 TMEM121BQ9BXQ6 578 aaPredicted RBP14.9□□□□□ -0.02
NUP54-215ENST00000514313 C2orf72A6NCS6 295 aa14.89□□□□□ -0.03
NUP54-215ENST00000514313 HAX1O00165 279 aa14.89□□□□□ -0.03
NUP54-215ENST00000514313 ATMINO43313 823 aaPredicted RBP14.89□□□□□ -0.03
NUP54-215ENST00000514313 C14orf37Q86TY3 774 aa14.89□□□□□ -0.03
NUP54-215ENST00000514313 AK7Q96M32 723 aa14.89□□□□□ -0.03
NUP54-215ENST00000514313 BOLA1Q9Y3E2 137 aa14.89□□□□□ -0.03
NUP54-215ENST00000514313 CLCN6P51797 869 aa14.88□□□□□ -0.03
NUP54-215ENST00000514313 OCEL1Q9H607 264 aa14.88□□□□□ -0.03
NUP54-215ENST00000514313 KIF3CO14782 793 aa14.87□□□□□ -0.03
NUP54-215ENST00000514313 IER5LQ5T953 404 aa14.86□□□□□ -0.03
NUP54-215ENST00000514313 ASTLQ6HA08 431 aaPredicted RBP14.86□□□□□ -0.03
NUP54-215ENST00000514313 KRI1Q8N9T8 703 aaKnown RBP14.86□□□□□ -0.03
NUP54-215ENST00000514313 GPBP1L1Q9HC44 474 aaPredicted RBP14.83□□□□□ -0.04
NUP54-215ENST00000514313 G3V3G9 751 aa14.82□□□□□ -0.04
NUP54-215ENST00000514313 GPR37O15354 613 aa14.82□□□□□ -0.04
NUP54-215ENST00000514313 PLCG2P16885 1265 aa14.79□□□□□ -0.04
NUP54-215ENST00000514313 TRIM66O15016 1216 aa14.77□□□□□ -0.05
NUP54-215ENST00000514313 MAP3K9P80192 1104 aa14.77□□□□□ -0.05
NUP54-215ENST00000514313 GRXCR2A6NFK2 248 aa14.76□□□□□ -0.05
NUP54-215ENST00000514313 UPF1Q92900 1129 aaKnown RBP eCLIP14.76□□□□□ -0.05
NUP54-215ENST00000514313 TMEM92Q6UXU6 159 aa14.75□□□□□ -0.05
NUP54-215ENST00000514313 PDE4DQ08499 809 aa14.74□□□□□ -0.05
NUP54-215ENST00000514313 KDM4CQ9H3R0 1056 aa14.73□□□□□ -0.05
NUP54-215ENST00000514313 L3MBTL3Q96JM7 780 aaPredicted RBP14.72□□□□□ -0.05
NUP54-215ENST00000514313 OXER1Q8TDS5 423 aa14.7□□□□□ -0.06
NUP54-215ENST00000514313 NUTM2FA1L443 756 aa14.69□□□□□ -0.06
NUP54-215ENST00000514313 OSBPP22059 807 aa14.68□□□□□ -0.06
NUP54-215ENST00000514313 IL27Q8NEV9 243 aa14.68□□□□□ -0.06
NUP54-215ENST00000514313 COLQQ9Y215 455 aaPredicted RBP14.66□□□□□ -0.06
NUP54-215ENST00000514313 PTGER2P43116 358 aa14.65□□□□□ -0.06
NUP54-215ENST00000514313 PELP1Q8IZL8 1130 aaKnown RBP14.65□□□□□ -0.06
NUP54-215ENST00000514313 DDX12PQ92771 950 aa14.65□□□□□ -0.06
NUP54-215ENST00000514313 MAP2K5Q13163 448 aa14.64□□□□□ -0.07
NUP54-215ENST00000514313 CCDC102AQ96A19 550 aa14.64□□□□□ -0.07
NUP54-215ENST00000514313 MINK1Q8N4C8 1332 aaPredicted RBP14.64□□□□□ -0.07
NUP54-215ENST00000514313 GABBR2O75899 941 aa14.63□□□□□ -0.07
NUP54-215ENST00000514313 SEC24BO95487 1268 aa14.63□□□□□ -0.07
NUP54-215ENST00000514313 DAXXQ9UER7 740 aaPredicted RBP14.63□□□□□ -0.07
NUP54-215ENST00000514313 GNPATO15228 680 aa14.6□□□□□ -0.07
NUP54-215ENST00000514313 TBC1D12O60347 775 aa14.59□□□□□ -0.07
NUP54-215ENST00000514313 EVI5O60447 810 aa14.59□□□□□ -0.07
NUP54-215ENST00000514313 PRIM1P49642 420 aaKnown RBP14.59□□□□□ -0.07
NUP54-215ENST00000514313 IRF6O14896 467 aa14.58□□□□□ -0.08
NUP54-215ENST00000514313 HIC1Q14526 733 aa14.58□□□□□ -0.08
NUP54-215ENST00000514313 POTEFA5A3E0 1075 aa14.57□□□□□ -0.08
NUP54-215ENST00000514313 FCHSD2O94868 740 aa14.57□□□□□ -0.08
NUP54-215ENST00000514313 FECHP22830 423 aa14.57□□□□□ -0.08
NUP54-215ENST00000514313 DCBLD2Q96PD2 775 aa14.56□□□□□ -0.08
NUP54-215ENST00000514313 AMHR2Q16671 573 aa14.55□□□□□ -0.08
NUP54-215ENST00000514313 FAM117AQ9C073 453 aa14.55□□□□□ -0.08
NUP54-215ENST00000514313 ARXQ96QS3 562 aa14.54□□□□□ -0.08
NUP54-215ENST00000514313 PARP9Q8IXQ6 854 aa14.53□□□□□ -0.08
NUP54-215ENST00000514313 SLC39A7Q92504 469 aa14.53□□□□□ -0.08
NUP54-215ENST00000514313 PTCD2Q8WV60 388 aaKnown RBP14.52□□□□□ -0.09
NUP54-215ENST00000514313 ZNF316A6NFI3 1004 aaPredicted RBP14.5□□□□□ -0.09
NUP54-215ENST00000514313 PTGDRQ13258 359 aa14.5□□□□□ -0.09
NUP54-215ENST00000514313 C3orf67Q6ZVT6 689 aa14.49□□□□□ -0.09
NUP54-215ENST00000514313 PLEKHG3A1L390 1219 aa14.48□□□□□ -0.09
NUP54-215ENST00000514313 SUPT5HO00267 1087 aaKnown RBP14.47□□□□□ -0.09
NUP54-215ENST00000514313 C7P10643 843 aa14.47□□□□□ -0.09
NUP54-215ENST00000514313 METRNQ9UJH8 293 aa14.47□□□□□ -0.09
NUP54-215ENST00000514313 DDRGK1Q96HY6 314 aa14.46□□□□□ -0.09
NUP54-215ENST00000514313 CDHR5Q9HBB8 845 aa14.45□□□□□ -0.1
NUP54-215ENST00000514313 ANO8Q9HCE9 1232 aaPredicted RBP14.45□□□□□ -0.1
NUP54-215ENST00000514313 SLC34A2O95436 690 aa14.44□□□□□ -0.1
NUP54-215ENST00000514313 TTLL12Q14166 644 aaPredicted RBP14.42□□□□□ -0.1
NUP54-215ENST00000514313 SP7Q8TDD2 431 aaPredicted RBP14.42□□□□□ -0.1
NUP54-215ENST00000514313 EN1Q05925 392 aaPredicted RBP14.41□□□□□ -0.1
NUP54-215ENST00000514313 PHF14O94880 888 aa14.39□□□□□ -0.11
NUP54-215ENST00000514313 EPAS1Q99814 870 aa14.38□□□□□ -0.11
NUP54-215ENST00000514313 NPDC1Q9NQX5 325 aaPredicted RBP14.38□□□□□ -0.11
NUP54-215ENST00000514313 MAP3K7O43318 606 aa14.37□□□□□ -0.11
NUP54-215ENST00000514313 POTEIP0CG38 1075 aa14.37□□□□□ -0.11
NUP54-215ENST00000514313 GIGYF2Q6Y7W6 1299 aaKnown RBP14.37□□□□□ -0.11
NUP54-215ENST00000514313 HOMEZQ8IX15 550 aa14.35□□□□□ -0.11
NUP54-215ENST00000514313 RBM33Q96EV2 1170 aaKnown RBP14.35□□□□□ -0.11
NUP54-215ENST00000514313 REPIN1Q9BWE0 567 aaKnown RBP14.35□□□□□ -0.11
NUP54-215ENST00000514313 PCDHGA10Q9Y5H3 936 aa14.35□□□□□ -0.11
NUP54-215ENST00000514313 MS4A1P11836 297 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms