RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 ROCK1Q13464 1354 aa17.18■□□□□ 0.34
NUP54-202ENST00000502850 TROQ12816 1431 aaPredicted RBP17.18■□□□□ 0.34
NUP54-202ENST00000502850 TONSLQ96HA7 1378 aa17.18■□□□□ 0.34
NUP54-202ENST00000502850 FAM69CQ0P6D2 419 aa17.18■□□□□ 0.34
NUP54-202ENST00000502850 ABCC10Q5T3U5 1492 aa17.17■□□□□ 0.34
NUP54-202ENST00000502850 SIN3AQ96ST3 1273 aa17.15■□□□□ 0.34
NUP54-202ENST00000502850 DAPK1P53355 1430 aa17.14■□□□□ 0.33
NUP54-202ENST00000502850 ADGBQ8N7X0 1667 aa17.14■□□□□ 0.33
NUP54-202ENST00000502850 PPP1R15AO75807 674 aaPredicted RBP17.12■□□□□ 0.33
NUP54-202ENST00000502850 ABCA8O94911 1581 aa17.12■□□□□ 0.33
NUP54-202ENST00000502850 DIP2BQ9P265 1576 aa17.12■□□□□ 0.33
NUP54-202ENST00000502850 ABCC2Q92887 1545 aa17.1■□□□□ 0.33
NUP54-202ENST00000502850 KIF14Q15058 1648 aa17.1■□□□□ 0.33
NUP54-202ENST00000502850 CROCC2H7BZ55 1655 aa17.09■□□□□ 0.33
NUP54-202ENST00000502850 UHRF1BP1LA0JNW5 1464 aa17.09■□□□□ 0.33
NUP54-202ENST00000502850 PLB1Q6P1J6 1458 aa17.09■□□□□ 0.33
NUP54-202ENST00000502850 YTHDC1Q96MU7 727 aaKnown RBP17.09■□□□□ 0.33
NUP54-202ENST00000502850 CAMSAP2Q08AD1 1489 aa17.07■□□□□ 0.32
NUP54-202ENST00000502850 ABCC5O15440 1437 aa17.07■□□□□ 0.32
NUP54-202ENST00000502850 GTF3C3Q9Y5Q9 886 aa17.07■□□□□ 0.32
NUP54-202ENST00000502850 RRP7BPQ9NSQ0 103 aa17.06■□□□□ 0.32
NUP54-202ENST00000502850 TSPOAP1O95153 1857 aa17.06■□□□□ 0.32
NUP54-202ENST00000502850 KDM6BO15054 1643 aa17.05■□□□□ 0.32
NUP54-202ENST00000502850 ADGRL2O95490 1459 aa17.04■□□□□ 0.32
NUP54-202ENST00000502850 GPATCH8Q9UKJ3 1502 aaKnown RBP17.04■□□□□ 0.32
NUP54-202ENST00000502850 ARID3CA6NKF2 412 aa17.03■□□□□ 0.32
NUP54-202ENST00000502850 ASXL2Q76L83 1435 aa17.03■□□□□ 0.32
NUP54-202ENST00000502850 CHIC2Q9UKJ5 165 aa17.03■□□□□ 0.32
NUP54-202ENST00000502850 CDC42BPAQ5VT25 1732 aa17.02■□□□□ 0.31
NUP54-202ENST00000502850 TRIM52Q96A61 297 aa17.01■□□□□ 0.31
NUP54-202ENST00000502850 SHANK2Q9UPX8 1470 aa17.01■□□□□ 0.31
NUP54-202ENST00000502850 KDM5BQ9UGL1 1544 aa17.01■□□□□ 0.31
NUP54-202ENST00000502850 DENND4BO75064 1496 aaPredicted RBP17■□□□□ 0.31
NUP54-202ENST00000502850 CFDP1Q9UEE9 299 aaPredicted RBP16.99■□□□□ 0.31
NUP54-202ENST00000502850 AEBP2Q6ZN18 517 aaPredicted RBP16.98■□□□□ 0.31
NUP54-202ENST00000502850 PELP1Q8IZL8 1130 aaKnown RBP16.98■□□□□ 0.31
NUP54-202ENST00000502850 MPHOSPH9Q99550 1183 aa16.98■□□□□ 0.31
NUP54-202ENST00000502850 ZCCHC11Q5TAX3 1644 aaKnown RBP16.98■□□□□ 0.31
NUP54-202ENST00000502850 PLEKHD1A6NEE1 506 aa16.97■□□□□ 0.31
NUP54-202ENST00000502850 ATP10BO94823 1461 aa16.97■□□□□ 0.31
NUP54-202ENST00000502850 GLI2P10070 1586 aa16.97■□□□□ 0.31
NUP54-202ENST00000502850 ANKRD30AQ9BXX3 1397 aa16.94■□□□□ 0.3
NUP54-202ENST00000502850 RPRD2Q5VT52 1461 aaKnown RBP16.94■□□□□ 0.3
NUP54-202ENST00000502850 ARHGEF5Q12774 1597 aa16.94■□□□□ 0.3
NUP54-202ENST00000502850 NCOA1Q15788 1441 aa16.94■□□□□ 0.3
NUP54-202ENST00000502850 PREX2Q70Z35 1606 aa16.92■□□□□ 0.3
NUP54-202ENST00000502850 ZNF644Q9H582 1327 aaPredicted RBP16.91■□□□□ 0.3
NUP54-202ENST00000502850 ANKRD30BQ9BXX2 1392 aa16.91■□□□□ 0.3
NUP54-202ENST00000502850 PPRC1Q5VV67 1664 aaKnown RBP16.91■□□□□ 0.3
NUP54-202ENST00000502850 DDX10Q13206 875 aaKnown RBP16.89■□□□□ 0.29
NUP54-202ENST00000502850 MAP3K4Q9Y6R4 1608 aa16.89■□□□□ 0.29
NUP54-202ENST00000502850 PZPP20742 1482 aa16.88■□□□□ 0.29
NUP54-202ENST00000502850 WDR7Q9Y4E6 1490 aa16.88■□□□□ 0.29
NUP54-202ENST00000502850 CCER2I3L3R5 266 aa16.88■□□□□ 0.29
NUP54-202ENST00000502850 KDM5DQ9BY66 1539 aa16.87■□□□□ 0.29
NUP54-202ENST00000502850 C9orf84Q5VXU9 1444 aa16.87■□□□□ 0.29
NUP54-202ENST00000502850 ANP32CO43423 234 aa16.87■□□□□ 0.29
NUP54-202ENST00000502850 TEX14Q8IWB6 1497 aa16.87■□□□□ 0.29
NUP54-202ENST00000502850 SLC4A1APQ9BWU0 796 aaKnown RBP16.86■□□□□ 0.29
NUP54-202ENST00000502850 ANKRD50Q9ULJ7 1429 aa16.85■□□□□ 0.29
NUP54-202ENST00000502850 KIAA1107Q9UPP5 1409 aa16.85■□□□□ 0.29
NUP54-202ENST00000502850 KCNH8Q96L42 1107 aa16.85■□□□□ 0.29
NUP54-202ENST00000502850 POLR1AO95602 1720 aaPredicted RBP16.84■□□□□ 0.29
NUP54-202ENST00000502850 ZNF777Q9ULD5 760 aaPredicted RBP16.84■□□□□ 0.29
NUP54-202ENST00000502850 CDC42BPBQ9Y5S2 1711 aa16.84■□□□□ 0.29
NUP54-202ENST00000502850 RSPH4AQ5TD94 716 aa16.83■□□□□ 0.28
NUP54-202ENST00000502850 CCDC141Q6ZP82 1450 aa16.83■□□□□ 0.28
NUP54-202ENST00000502850 EIF4G2P78344 907 aaKnown RBP eCLIP16.82■□□□□ 0.28
NUP54-202ENST00000502850 MAST1Q9Y2H9 1570 aa16.82■□□□□ 0.28
NUP54-202ENST00000502850 MYO5CQ9NQX4 1742 aa16.82■□□□□ 0.28
NUP54-202ENST00000502850 SAMD9LQ8IVG5 1584 aa16.81■□□□□ 0.28
NUP54-202ENST00000502850 TSPY4P0CV99 314 aa16.81■□□□□ 0.28
NUP54-202ENST00000502850 TSPY10P0CW01 314 aa16.81■□□□□ 0.28
NUP54-202ENST00000502850 PLEKHH2Q8IVE3 1493 aa16.81■□□□□ 0.28
NUP54-202ENST00000502850 L3MBTL2Q969R5 705 aa16.8■□□□□ 0.28
NUP54-202ENST00000502850 CD109Q6YHK3 1445 aa16.79■□□□□ 0.28
NUP54-202ENST00000502850 MBD5Q9P267 1494 aa16.78■□□□□ 0.28
NUP54-202ENST00000502850 COL17A1Q9UMD9 1497 aaPredicted RBP16.78■□□□□ 0.28
NUP54-202ENST00000502850 ARHGEF12Q9NZN5 1544 aa16.76■□□□□ 0.27
NUP54-202ENST00000502850 HSPA5P11021 654 aaKnown RBP16.76■□□□□ 0.27
NUP54-202ENST00000502850 HIRIP3Q9BW71 556 aaPredicted RBP16.76■□□□□ 0.27
NUP54-202ENST00000502850 TTC37Q6PGP7 1564 aa16.76■□□□□ 0.27
NUP54-202ENST00000502850 KIF15Q9NS87 1388 aa16.76■□□□□ 0.27
NUP54-202ENST00000502850 PLXNC1O60486 1568 aa16.75■□□□□ 0.27
NUP54-202ENST00000502850 ARHGAP5Q13017 1502 aa16.75■□□□□ 0.27
NUP54-202ENST00000502850 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP16.75■□□□□ 0.275e-6■□□□□ 11
NUP54-202ENST00000502850 FOXD1Q16676 465 aa16.74■□□□□ 0.27
NUP54-202ENST00000502850 CNTLNQ9NXG0 1405 aa16.73■□□□□ 0.27
NUP54-202ENST00000502850 KDM4FA0A1W2PPD8 638 aa16.72■□□□□ 0.27
NUP54-202ENST00000502850 UNC13BO14795 1591 aa16.72■□□□□ 0.27
NUP54-202ENST00000502850 SYCP2Q9BX26 1530 aa16.71■□□□□ 0.27
NUP54-202ENST00000502850 NUP155O75694 1391 aa16.71■□□□□ 0.27
NUP54-202ENST00000502850 WASHC2AQ641Q2 1341 aa16.7■□□□□ 0.26
NUP54-202ENST00000502850 PKD2Q13563 968 aa16.7■□□□□ 0.26
NUP54-202ENST00000502850 UHRF1BP1Q6BDS2 1440 aa16.69■□□□□ 0.26
NUP54-202ENST00000502850 ABCA9Q8IUA7 1624 aa16.68■□□□□ 0.26
NUP54-202ENST00000502850 CCDC7Q96M83 1385 aa16.68■□□□□ 0.26
NUP54-202ENST00000502850 SPATA31E1Q6ZUB1 1445 aa16.68■□□□□ 0.26
NUP54-202ENST00000502850 ARAP3Q8WWN8 1544 aa16.68■□□□□ 0.26
NUP54-202ENST00000502850 FAM135AQ9P2D6 1515 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 90.4 ms