RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 ZBTB47Q9UFB7 747 aaPredicted RBP19.4■□□□□ 0.7
HDAC6-220ENST00000477528 SENP3-EIF4A1A0A087X0R7 540 aa19.4■□□□□ 0.7
HDAC6-220ENST00000477528 MAP3K1Q13233 1512 aa19.4■□□□□ 0.7
HDAC6-220ENST00000477528 MRC2Q9UBG0 1479 aa19.38■□□□□ 0.69
HDAC6-220ENST00000477528 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.38■□□□□ 0.69
HDAC6-220ENST00000477528 EHBP1L1Q8N3D4 1523 aa19.37■□□□□ 0.69
HDAC6-220ENST00000477528 ROCK2O75116 1388 aaKnown RBP19.37■□□□□ 0.69
HDAC6-220ENST00000477528 LAMC3Q9Y6N6 1575 aa19.36■□□□□ 0.69
HDAC6-220ENST00000477528 SLC24A1O60721 1099 aa19.36■□□□□ 0.69
HDAC6-220ENST00000477528 PTPRGP23470 1445 aa19.36■□□□□ 0.69
HDAC6-220ENST00000477528 CC2D1BQ5T0F9 858 aaKnown RBP19.35■□□□□ 0.69
HDAC6-220ENST00000477528 CUL7Q14999 1698 aa19.34■□□□□ 0.69
HDAC6-220ENST00000477528 ERICH6BQ5W0A0 696 aa19.33■□□□□ 0.68
HDAC6-220ENST00000477528 IFT140Q96RY7 1462 aa19.33■□□□□ 0.68
HDAC6-220ENST00000477528 PCF11O94913 1555 aaKnown RBP19.32■□□□□ 0.68
HDAC6-220ENST00000477528 HFM1A2PYH4 1435 aa19.32■□□□□ 0.68
HDAC6-220ENST00000477528 ZNF644Q9H582 1327 aaPredicted RBP19.32■□□□□ 0.68
HDAC6-220ENST00000477528 RALBP1Q15311 655 aa19.31■□□□□ 0.68
HDAC6-220ENST00000477528 KTN1Q86UP2 1357 aaKnown RBP19.31■□□□□ 0.68
HDAC6-220ENST00000477528 PRDM2Q13029 1718 aa19.3■□□□□ 0.68
HDAC6-220ENST00000477528 MIA2Q96PC5 1412 aa19.29■□□□□ 0.68
HDAC6-220ENST00000477528 CFAP53Q96M91 514 aa19.27■□□□□ 0.68
HDAC6-220ENST00000477528 HECW1Q76N89 1606 aa19.27■□□□□ 0.68
HDAC6-220ENST00000477528 B4GALNT3Q6L9W6 998 aa19.27■□□□□ 0.68
HDAC6-220ENST00000477528 PRKRIP1Q9H875 184 aaPredicted RBP19.25■□□□□ 0.67
HDAC6-220ENST00000477528 UPF2Q9HAU5 1272 aaKnown RBP19.24■□□□□ 0.67
HDAC6-220ENST00000477528 SUPT6HQ7KZ85 1726 aaKnown RBP19.24■□□□□ 0.67
HDAC6-220ENST00000477528 CCDC144AA2RUR9 1427 aa19.23■□□□□ 0.67
HDAC6-220ENST00000477528 SPAG9O60271 1321 aaKnown RBP19.23■□□□□ 0.67
HDAC6-220ENST00000477528 ANP32EQ9BTT0 268 aa19.22■□□□□ 0.67
HDAC6-220ENST00000477528 USP47Q96K76 1375 aa19.22■□□□□ 0.67
HDAC6-220ENST00000477528 URB2Q14146 1524 aaKnown RBP19.2■□□□□ 0.66
HDAC6-220ENST00000477528 ST20-MTHFSA0A0A6YYL1 179 aa19.2■□□□□ 0.66
HDAC6-220ENST00000477528 ANKRD50Q9ULJ7 1429 aa19.19■□□□□ 0.66
HDAC6-220ENST00000477528 SENP3Q9H4L4 574 aaPredicted RBP19.19■□□□□ 0.66
HDAC6-220ENST00000477528 KIF15Q9NS87 1388 aa19.18■□□□□ 0.66
HDAC6-220ENST00000477528 EPRSP07814 1512 aaKnown RBP19.18■□□□□ 0.66
HDAC6-220ENST00000477528 BCL11AQ9H165 835 aa19.18■□□□□ 0.66
HDAC6-220ENST00000477528 SNAPC4Q5SXM2 1469 aa19.18■□□□□ 0.66
HDAC6-220ENST00000477528 CCDC7Q96M83 1385 aa19.17■□□□□ 0.66
HDAC6-220ENST00000477528 IQGAP2Q13576 1575 aa19.17■□□□□ 0.66
HDAC6-220ENST00000477528 NAIPQ13075 1403 aa19.17■□□□□ 0.66
HDAC6-220ENST00000477528 TSHZ2Q9NRE2 1034 aa19.17■□□□□ 0.66
HDAC6-220ENST00000477528 RBM19Q9Y4C8 960 aaKnown RBP19.17■□□□□ 0.66
HDAC6-220ENST00000477528 KIAA0586Q9BVV6 1533 aa19.17■□□□□ 0.66
HDAC6-220ENST00000477528 KIF3BO15066 747 aa19.16■□□□□ 0.66
HDAC6-220ENST00000477528 NLRP13Q86W25 1043 aa19.16■□□□□ 0.66
HDAC6-220ENST00000477528 NUDCQ9Y266 331 aa19.16■□□□□ 0.66
HDAC6-220ENST00000477528 TROQ12816 1431 aaPredicted RBP19.15■□□□□ 0.66
HDAC6-220ENST00000477528 NBR1Q14596 966 aa19.15■□□□□ 0.66
HDAC6-220ENST00000477528 WDR97A6NE52 1622 aa19.15■□□□□ 0.66
HDAC6-220ENST00000477528 GGT6Q6P531 493 aa19.14■□□□□ 0.65
HDAC6-220ENST00000477528 CNTLNQ9NXG0 1405 aa19.13■□□□□ 0.65
HDAC6-220ENST00000477528 WASHC2AQ641Q2 1341 aa19.13■□□□□ 0.65
HDAC6-220ENST00000477528 EIF3AQ14152 1382 aaKnown RBP19.13■□□□□ 0.65
HDAC6-220ENST00000477528 KIF7Q2M1P5 1343 aa19.12■□□□□ 0.65
HDAC6-220ENST00000477528 MYBBP1AQ9BQG0 1328 aaKnown RBP19.12■□□□□ 0.65
HDAC6-220ENST00000477528 POGKQ9P215 609 aa19.11■□□□□ 0.65
HDAC6-220ENST00000477528 ARID4BQ4LE39 1312 aaPredicted RBP19.11■□□□□ 0.65
HDAC6-220ENST00000477528 ZBED9Q6R2W3 1325 aa19.11■□□□□ 0.65
HDAC6-220ENST00000477528 PRG4Q92954 1404 aaPredicted RBP19.11■□□□□ 0.65
HDAC6-220ENST00000477528 CDK13Q14004 1512 aaKnown RBP19.11■□□□□ 0.65
HDAC6-220ENST00000477528 DDRGK1Q96HY6 314 aa19.11■□□□□ 0.65
HDAC6-220ENST00000477528 DAPK1P53355 1430 aa19.11■□□□□ 0.65
HDAC6-220ENST00000477528 DNAJC5BQ9UF47 199 aa19.11■□□□□ 0.65
HDAC6-220ENST00000477528 SYNJ2O15056 1496 aa19.1■□□□□ 0.65
HDAC6-220ENST00000477528 NEUROD2Q15784 382 aa19.1■□□□□ 0.65
HDAC6-220ENST00000477528 TNNT2P45379 298 aaPredicted RBP19.09■□□□□ 0.65
HDAC6-220ENST00000477528 PLPPR3Q6T4P5 718 aa19.09■□□□□ 0.65
HDAC6-220ENST00000477528 RCAN3Q9UKA8 241 aa19.09■□□□□ 0.65
HDAC6-220ENST00000477528 ROCK1Q13464 1354 aa19.07■□□□□ 0.64
HDAC6-220ENST00000477528 PTPN23Q9H3S7 1636 aa19.07■□□□□ 0.64
HDAC6-220ENST00000477528 MORC1Q86VD1 984 aa19.07■□□□□ 0.64
HDAC6-220ENST00000477528 PDE3BQ13370 1112 aa19.06■□□□□ 0.64
HDAC6-220ENST00000477528 MAPK8IP3Q9UPT6 1336 aa19.05■□□□□ 0.64
HDAC6-220ENST00000477528 KIAA1107Q9UPP5 1409 aa19.04■□□□□ 0.64
HDAC6-220ENST00000477528 C9orf84Q5VXU9 1444 aa19.02■□□□□ 0.64
HDAC6-220ENST00000477528 PANK3Q9H999 370 aa19.02■□□□□ 0.63
HDAC6-220ENST00000477528 NBPF8Q3BBV2 869 aa19■□□□□ 0.63
HDAC6-220ENST00000477528 NOP58Q9Y2X3 529 aaKnown RBP19■□□□□ 0.63
HDAC6-220ENST00000477528 PPM1GO15355 546 aaPredicted RBP19■□□□□ 0.63
HDAC6-220ENST00000477528 SRPK2P78362 688 aaKnown RBP18.99■□□□□ 0.63
HDAC6-220ENST00000477528 FTSJ3Q8IY81 847 aaKnown RBP18.99■□□□□ 0.63
HDAC6-220ENST00000477528 THOC2Q8NI27 1593 aaKnown RBP18.99■□□□□ 0.63
HDAC6-220ENST00000477528 HSP90AA1P07900 732 aaKnown RBP18.99■□□□□ 0.63
HDAC6-220ENST00000477528 FRAT1Q92837 279 aaPredicted RBP18.99■□□□□ 0.63
HDAC6-220ENST00000477528 GRIN2AQ12879 1464 aa18.99■□□□□ 0.63
HDAC6-220ENST00000477528 MYH16Q9H6N6 1097 aa18.98■□□□□ 0.63
HDAC6-220ENST00000477528 ARHGAP5Q13017 1502 aa18.98■□□□□ 0.63
HDAC6-220ENST00000477528 U2SURPO15042 1029 aaKnown RBP18.97■□□□□ 0.63
HDAC6-220ENST00000477528 PNNQ9H307 717 aaKnown RBP18.96■□□□□ 0.63
HDAC6-220ENST00000477528 WASHC2CQ9Y4E1 1318 aa18.96■□□□□ 0.63
HDAC6-220ENST00000477528 MAGI1Q96QZ7 1491 aaPredicted RBP18.95■□□□□ 0.62
HDAC6-220ENST00000477528 RGS3P49796 1198 aa18.95■□□□□ 0.62
HDAC6-220ENST00000477528 BECN1Q14457 450 aa18.95■□□□□ 0.62
HDAC6-220ENST00000477528 SAFB2Q14151 953 aaKnown RBP eCLIP18.95■□□□□ 0.62
HDAC6-220ENST00000477528 STAC3Q96MF2 364 aa18.95■□□□□ 0.62
HDAC6-220ENST00000477528 ABCC5O15440 1437 aa18.95■□□□□ 0.62
HDAC6-220ENST00000477528 MS4A1P11836 297 aa18.95■□□□□ 0.62
HDAC6-220ENST00000477528 MAPKBP1O60336 1514 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 9.7 ms