RNA–Protein interactions for RNA: ENST00000474871.5

NPHP3-206, Transcript of nephrocystin 3, humanhuman

TSL 2

Gene NPHP3, Length 4,493 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-206ENST00000474871 SGSM3Q96HU1 749 aa6.72□□□□□ -1.33
NPHP3-206ENST00000474871 ARID3AQ99856 593 aa6.72□□□□□ -1.33
NPHP3-206ENST00000474871 CWC22Q9HCG8 908 aaKnown RBP6.72□□□□□ -1.33
NPHP3-206ENST00000474871 RGS3P49796 1198 aa6.71□□□□□ -1.33
NPHP3-206ENST00000474871 PRDM2Q13029 1718 aa6.71□□□□□ -1.34
NPHP3-206ENST00000474871 SYNJ1O43426 1573 aa6.7□□□□□ -1.34
NPHP3-206ENST00000474871 SOX12O15370 315 aa6.7□□□□□ -1.34
NPHP3-206ENST00000474871 MAFGO15525 162 aa6.7□□□□□ -1.34
NPHP3-206ENST00000474871 MCCP23508 829 aa6.7□□□□□ -1.34
NPHP3-206ENST00000474871 BORCS6Q96GS4 357 aa6.7□□□□□ -1.34
NPHP3-206ENST00000474871 IGF1RP08069 1367 aa6.7□□□□□ -1.34
NPHP3-206ENST00000474871 IRF6O14896 467 aa6.69□□□□□ -1.34
NPHP3-206ENST00000474871 DNAJC14Q6Y2X3 702 aaPredicted RBP6.69□□□□□ -1.34
NPHP3-206ENST00000474871 HMGB1P09429 215 aaKnown RBP6.69□□□□□ -1.34
NPHP3-206ENST00000474871 WRNQ14191 1432 aaPredicted RBP eCLIP6.69□□□□□ -1.34
NPHP3-206ENST00000474871 CDCA8Q53HL2 280 aa6.69□□□□□ -1.34
NPHP3-206ENST00000474871 RRP9O43818 475 aaKnown RBP6.68□□□□□ -1.34
NPHP3-206ENST00000474871 SH3BP1Q9Y3L3 701 aa6.68□□□□□ -1.34
NPHP3-206ENST00000474871 CFTRP13569 1480 aa6.67□□□□□ -1.34
NPHP3-206ENST00000474871 BIVM-ERCC5R4GMW8 1640 aa6.67□□□□□ -1.34
NPHP3-206ENST00000474871 TOP2BQ02880 1626 aa6.67□□□□□ -1.34
NPHP3-206ENST00000474871 DNAJC5Q9H3Z4 198 aa6.67□□□□□ -1.34
NPHP3-206ENST00000474871 FAM177A1Q8N128 213 aaPredicted RBP6.66□□□□□ -1.34
NPHP3-206ENST00000474871 MYCNP04198 464 aaPredicted RBP6.66□□□□□ -1.34
NPHP3-206ENST00000474871 PLCD3Q8N3E9 789 aa6.66□□□□□ -1.34
NPHP3-206ENST00000474871 ARID4BQ4LE39 1312 aaPredicted RBP6.66□□□□□ -1.34
NPHP3-206ENST00000474871 CANXP27824 592 aaKnown RBP6.65□□□□□ -1.34
NPHP3-206ENST00000474871 PLCD4Q9BRC7 762 aa6.64□□□□□ -1.35
NPHP3-206ENST00000474871 SOGA1O94964 1423 aa6.64□□□□□ -1.35
NPHP3-206ENST00000474871 CARD10Q9BWT7 1032 aa6.64□□□□□ -1.35
NPHP3-206ENST00000474871 DNAJC2Q99543 621 aaKnown RBP6.63□□□□□ -1.35
NPHP3-206ENST00000474871 EEA1Q15075 1411 aa6.63□□□□□ -1.35
NPHP3-206ENST00000474871 ERCC6Q03468 1493 aa6.63□□□□□ -1.35
NPHP3-206ENST00000474871 ABCF1Q8NE71 845 aaKnown RBP eCLIP6.62□□□□□ -1.35
NPHP3-206ENST00000474871 FAM193AP78312 1265 aa6.62□□□□□ -1.35
NPHP3-206ENST00000474871 CUX1P39880 1505 aa6.62□□□□□ -1.35
NPHP3-206ENST00000474871 RUSC2Q8N2Y8 1516 aa6.62□□□□□ -1.35
NPHP3-206ENST00000474871 CCDC27Q2M243 656 aa6.62□□□□□ -1.35
NPHP3-206ENST00000474871 EGFL6Q8IUX8 553 aa6.62□□□□□ -1.35
NPHP3-206ENST00000474871 NGEFQ8N5V2 710 aa6.62□□□□□ -1.35
NPHP3-206ENST00000474871 PSMD1Q99460 953 aa6.62□□□□□ -1.35
NPHP3-206ENST00000474871 PDS5BQ9NTI5 1447 aa6.6□□□□□ -1.35
NPHP3-206ENST00000474871 TMTC2Q8N394 836 aa6.6□□□□□ -1.35
NPHP3-206ENST00000474871 DIEXFQ68CQ4 756 aaKnown RBP6.6□□□□□ -1.35
NPHP3-206ENST00000474871 KIF21BO75037 1637 aa6.59□□□□□ -1.35
NPHP3-206ENST00000474871 FKBP8Q14318 412 aa6.59□□□□□ -1.35
NPHP3-206ENST00000474871 ANAPC15P60006 121 aa6.58□□□□□ -1.36
NPHP3-206ENST00000474871 SETQ01105 290 aaPredicted RBP6.58□□□□□ -1.36
NPHP3-206ENST00000474871 PRR29P0C7W0 189 aa6.58□□□□□ -1.36
NPHP3-206ENST00000474871 LAMC3Q9Y6N6 1575 aa6.57□□□□□ -1.36
NPHP3-206ENST00000474871 PHF14O94880 888 aa6.57□□□□□ -1.36
NPHP3-206ENST00000474871 VGLL3A8MV65 326 aa6.57□□□□□ -1.36
NPHP3-206ENST00000474871 FAM43AQ8N2R8 423 aa6.57□□□□□ -1.36
NPHP3-206ENST00000474871 RPS6KL1Q9Y6S9 549 aa6.56□□□□□ -1.36
NPHP3-206ENST00000474871 GOLGA3Q08378 1498 aa6.56□□□□□ -1.36
NPHP3-206ENST00000474871 CCDC96Q2M329 555 aa6.56□□□□□ -1.36
NPHP3-206ENST00000474871 FANCD2Q9BXW9 1451 aa6.55□□□□□ -1.36
NPHP3-206ENST00000474871 SEMA3FQ13275 785 aa6.55□□□□□ -1.36
NPHP3-206ENST00000474871 ZNF622Q969S3 477 aaKnown RBP eCLIP6.55□□□□□ -1.36
NPHP3-206ENST00000474871 HDAC5Q9UQL6 1122 aa6.55□□□□□ -1.36
NPHP3-206ENST00000474871 KDM4AO75164 1064 aa6.55□□□□□ -1.36
NPHP3-206ENST00000474871 CEP164Q9UPV0 1460 aa6.55□□□□□ -1.36
NPHP3-206ENST00000474871 NESP48681 1621 aa6.55□□□□□ -1.36
NPHP3-206ENST00000474871 ATP1B4Q9UN42 357 aaPredicted RBP6.54□□□□□ -1.36
NPHP3-206ENST00000474871 MTMR7Q9Y216 660 aa6.54□□□□□ -1.36
NPHP3-206ENST00000474871 PAK3O75914 559 aaPredicted RBP6.54□□□□□ -1.36
NPHP3-206ENST00000474871 HSP90AA2PQ14568 343 aaPredicted RBP6.54□□□□□ -1.36
NPHP3-206ENST00000474871 TNIKQ9UKE5 1360 aa6.54□□□□□ -1.36
NPHP3-206ENST00000474871 CLGNO14967 610 aa6.54□□□□□ -1.36
NPHP3-206ENST00000474871 NME8Q8N427 588 aa6.54□□□□□ -1.36
NPHP3-206ENST00000474871 U3KPZ7 1027 aaPredicted RBP6.54□□□□□ -1.36
NPHP3-206ENST00000474871 DNMBPQ6XZF7 1577 aa6.53□□□□□ -1.36
NPHP3-206ENST00000474871 NBPF20Q3BBV1 942 aa6.53□□□□□ -1.36
NPHP3-206ENST00000474871 LAS1LQ9Y4W2 734 aaKnown RBP6.53□□□□□ -1.36
NPHP3-206ENST00000474871 CNGB1Q14028 1251 aaPredicted RBP6.52□□□□□ -1.36
NPHP3-206ENST00000474871 CEP162Q5TB80 1403 aa6.52□□□□□ -1.37
NPHP3-206ENST00000474871 ERICH3Q5RHP9 1530 aa6.52□□□□□ -1.37
NPHP3-206ENST00000474871 FGD5Q6ZNL6 1462 aa6.52□□□□□ -1.37
NPHP3-206ENST00000474871 PLEKHD1A6NEE1 506 aa6.52□□□□□ -1.37
NPHP3-206ENST00000474871 GPATCH11Q8N954 259 aa6.52□□□□□ -1.37
NPHP3-206ENST00000474871 PPM1GO15355 546 aaPredicted RBP6.52□□□□□ -1.37
NPHP3-206ENST00000474871 KIF21AQ7Z4S6 1674 aa6.51□□□□□ -1.37
NPHP3-206ENST00000474871 LOC102724159A0A0B4J2E5 919 aa6.51□□□□□ -1.37
NPHP3-206ENST00000474871 PWP2Q15269 919 aaKnown RBP6.51□□□□□ -1.37
NPHP3-206ENST00000474871 NBPF11Q86T75 865 aa6.51□□□□□ -1.37
NPHP3-206ENST00000474871 MPNDQ8N594 471 aa6.51□□□□□ -1.37
NPHP3-206ENST00000474871 RRAGDQ9NQL2 400 aaPredicted RBP6.51□□□□□ -1.37
NPHP3-206ENST00000474871 RAPGEF2Q9Y4G8 1499 aa6.51□□□□□ -1.37
NPHP3-206ENST00000474871 PRXQ9BXM0 1461 aa6.5□□□□□ -1.37
NPHP3-206ENST00000474871 TOPBP1Q92547 1522 aa6.5□□□□□ -1.37
NPHP3-206ENST00000474871 KIF27Q86VH2 1401 aa6.5□□□□□ -1.37
NPHP3-206ENST00000474871 UTP14CQ5TAP6 766 aaKnown RBP6.5□□□□□ -1.37
NPHP3-206ENST00000474871 WDR97A6NE52 1622 aa6.5□□□□□ -1.37
NPHP3-206ENST00000474871 FOXD4L5Q5VV16 416 aaPredicted RBP6.5□□□□□ -1.37
NPHP3-206ENST00000474871 FOXD4L4Q8WXT5 416 aaPredicted RBP6.5□□□□□ -1.37
NPHP3-206ENST00000474871 EVI5LQ96CN4 794 aa6.5□□□□□ -1.37
NPHP3-206ENST00000474871 PTMAP06454 111 aaKnown RBP6.49□□□□□ -1.37
NPHP3-206ENST00000474871 SLC20A2Q08357 652 aa6.49□□□□□ -1.37
NPHP3-206ENST00000474871 OS9Q13438 667 aaPredicted RBP6.49□□□□□ -1.37
NPHP3-206ENST00000474871 RGL3Q3MIN7 710 aa6.49□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms