RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 H0YHG0 523 aa11.17□□□□□ -0.62
NIPBL-202ENST00000448238 IRX6P78412 446 aaPredicted RBP11.17□□□□□ -0.62
NIPBL-202ENST00000448238 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.16□□□□□ -0.62
NIPBL-202ENST00000448238 NUDCQ9Y266 331 aa11.16□□□□□ -0.62
NIPBL-202ENST00000448238 CCDC66A2RUB6 948 aa11.16□□□□□ -0.62
NIPBL-202ENST00000448238 RGS3P49796 1198 aa11.16□□□□□ -0.62
NIPBL-202ENST00000448238 HSP90B2PQ58FF3 399 aa11.16□□□□□ -0.62
NIPBL-202ENST00000448238 ZNF777Q9ULD5 760 aaPredicted RBP11.16□□□□□ -0.62
NIPBL-202ENST00000448238 MYO6Q9UM54 1294 aa11.15□□□□□ -0.62
NIPBL-202ENST00000448238 TPD52L1Q16890 204 aaPredicted RBP11.15□□□□□ -0.62
NIPBL-202ENST00000448238 CCAR2Q8N163 923 aaKnown RBP11.15□□□□□ -0.62
NIPBL-202ENST00000448238 FBXO3Q9UK99 471 aa11.15□□□□□ -0.63
NIPBL-202ENST00000448238 TMX4Q9H1E5 349 aaPredicted RBP11.14□□□□□ -0.63
NIPBL-202ENST00000448238 ARGLU1Q9NWB6 273 aaPredicted RBP11.14□□□□□ -0.63
NIPBL-202ENST00000448238 SEPT11Q9NVA2 429 aaKnown RBP11.14□□□□□ -0.63
NIPBL-202ENST00000448238 GOLGA6L19H0YKK7 550 aa11.14□□□□□ -0.63
NIPBL-202ENST00000448238 CHMP4AQ9BY43 222 aa11.13□□□□□ -0.63
NIPBL-202ENST00000448238 GOLGA6L7A0A1B0GV03 622 aa11.13□□□□□ -0.63
NIPBL-202ENST00000448238 KNSTRNQ9Y448 316 aa11.12□□□□□ -0.63
NIPBL-202ENST00000448238 ZBTB7CA1YPR0 619 aa11.12□□□□□ -0.63
NIPBL-202ENST00000448238 ANKRD20A12PQ8NF67 263 aa11.12□□□□□ -0.63
NIPBL-202ENST00000448238 CCDC173Q0VFZ6 552 aa11.11□□□□□ -0.63
NIPBL-202ENST00000448238 GPATCH3Q96I76 525 aa11.11□□□□□ -0.63
NIPBL-202ENST00000448238 CREBRFQ8IUR6 639 aa11.1□□□□□ -0.63
NIPBL-202ENST00000448238 PES1O00541 588 aaKnown RBP11.1□□□□□ -0.63
NIPBL-202ENST00000448238 FBLN2P98095 1184 aa11.1□□□□□ -0.63
NIPBL-202ENST00000448238 CNKSR2Q8WXI2 1034 aa11.1□□□□□ -0.63
NIPBL-202ENST00000448238 USP8P40818 1118 aa11.1□□□□□ -0.63
NIPBL-202ENST00000448238 HDAC5Q9UQL6 1122 aa11.09□□□□□ -0.63
NIPBL-202ENST00000448238 ATP6V1DQ9Y5K8 247 aa11.09□□□□□ -0.63
NIPBL-202ENST00000448238 NPM1P06748 294 aaKnown RBP eCLIP11.09□□□□□ -0.63
NIPBL-202ENST00000448238 TCERG1O14776 1098 aaKnown RBP11.08□□□□□ -0.64
NIPBL-202ENST00000448238 ERCC4Q92889 916 aaPredicted RBP11.08□□□□□ -0.64
NIPBL-202ENST00000448238 ODF2Q5BJF6 829 aa11.08□□□□□ -0.64
NIPBL-202ENST00000448238 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.08□□□□□ -0.645e-7■■■■■ 47.4
NIPBL-202ENST00000448238 GZF1Q9H116 711 aaPredicted RBP11.07□□□□□ -0.64
NIPBL-202ENST00000448238 DDX11L8A8MPP1 907 aa11.07□□□□□ -0.64
NIPBL-202ENST00000448238 SF3A1Q15459 793 aaKnown RBP11.07□□□□□ -0.64
NIPBL-202ENST00000448238 MARCH6O60337 910 aa11.07□□□□□ -0.64
NIPBL-202ENST00000448238 HOOK1Q9UJC3 728 aaKnown RBP11.06□□□□□ -0.64
NIPBL-202ENST00000448238 KIF16BQ96L93 1317 aa11.06□□□□□ -0.64
NIPBL-202ENST00000448238 BECN2A8MW95 431 aa11.06□□□□□ -0.64
NIPBL-202ENST00000448238 ANKRD18AQ8IVF6 992 aa11.06□□□□□ -0.64
NIPBL-202ENST00000448238 PPP1R15AO75807 674 aaPredicted RBP11.05□□□□□ -0.64
NIPBL-202ENST00000448238 HSP90AB3PQ58FF7 597 aa11.05□□□□□ -0.64
NIPBL-202ENST00000448238 FRAT1Q92837 279 aaPredicted RBP11.05□□□□□ -0.64
NIPBL-202ENST00000448238 SUPT16HQ9Y5B9 1047 aaKnown RBP11.04□□□□□ -0.64
NIPBL-202ENST00000448238 PLCD4Q9BRC7 762 aa11.04□□□□□ -0.64
NIPBL-202ENST00000448238 IPO8O15397 1037 aaKnown RBP11.04□□□□□ -0.64
NIPBL-202ENST00000448238 SKOR2Q2VWA4 1001 aaPredicted RBP11.04□□□□□ -0.64
NIPBL-202ENST00000448238 CCDC47Q96A33 483 aaKnown RBP11.04□□□□□ -0.64
NIPBL-202ENST00000448238 EZRP15311 586 aaKnown RBP11.04□□□□□ -0.64
NIPBL-202ENST00000448238 TAF3Q5VWG9 929 aa11.04□□□□□ -0.64
NIPBL-202ENST00000448238 TCEAL9Q9UHQ7 104 aa11.04□□□□□ -0.64
NIPBL-202ENST00000448238 PLPPR3Q6T4P5 718 aa11.03□□□□□ -0.64
NIPBL-202ENST00000448238 CT47A1Q5JQC4 288 aaPredicted RBP11.03□□□□□ -0.64
NIPBL-202ENST00000448238 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.03□□□□□ -0.64
NIPBL-202ENST00000448238 ANO8Q9HCE9 1232 aaPredicted RBP11.02□□□□□ -0.64
NIPBL-202ENST00000448238 LEKR1Q6ZMV7 388 aa11.02□□□□□ -0.65
NIPBL-202ENST00000448238 TSPY4P0CV99 314 aa11.02□□□□□ -0.65
NIPBL-202ENST00000448238 TSPY10P0CW01 314 aa11.02□□□□□ -0.65
NIPBL-202ENST00000448238 HOMER1Q86YM7 354 aa11.02□□□□□ -0.65
NIPBL-202ENST00000448238 ST18O60284 1047 aa11.02□□□□□ -0.65
NIPBL-202ENST00000448238 DEF6Q9H4E7 631 aa11.01□□□□□ -0.65
NIPBL-202ENST00000448238 SPRYD3Q8NCJ5 442 aa11.01□□□□□ -0.65
NIPBL-202ENST00000448238 KDM2AQ9Y2K7 1162 aa11.01□□□□□ -0.65
NIPBL-202ENST00000448238 CLASRPQ8N2M8 674 aaKnown RBP11.01□□□□□ -0.65
NIPBL-202ENST00000448238 VPS53Q5VIR6 699 aa11□□□□□ -0.65
NIPBL-202ENST00000448238 KIAA0754O94854 1291 aa11□□□□□ -0.65
NIPBL-202ENST00000448238 DIAPH3Q9NSV4 1193 aa11□□□□□ -0.65
NIPBL-202ENST00000448238 BCCIPQ9P287 314 aaKnown RBP eCLIP10.99□□□□□ -0.65
NIPBL-202ENST00000448238 TSPYL1Q9H0U9 437 aa10.99□□□□□ -0.65
NIPBL-202ENST00000448238 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.99□□□□□ -0.651e-6■■■■□ 20.4
NIPBL-202ENST00000448238 PODXL2Q9NZ53 605 aa10.98□□□□□ -0.65
NIPBL-202ENST00000448238 FEZ1Q99689 392 aa10.98□□□□□ -0.65
NIPBL-202ENST00000448238 GORABQ5T7V8 394 aa10.98□□□□□ -0.65
NIPBL-202ENST00000448238 PCMTD1Q96MG8 357 aaPredicted RBP10.98□□□□□ -0.65
NIPBL-202ENST00000448238 ERLIN2O94905 339 aa10.97□□□□□ -0.65
NIPBL-202ENST00000448238 SPATA24Q86W54 205 aa10.97□□□□□ -0.65
NIPBL-202ENST00000448238 MNS1Q8NEH6 495 aa10.97□□□□□ -0.65
NIPBL-202ENST00000448238 WWC1Q8IX03 1113 aa10.97□□□□□ -0.65
NIPBL-202ENST00000448238 ZNF592Q92610 1267 aa10.97□□□□□ -0.65
NIPBL-202ENST00000448238 AKAP17AQ02040 695 aaKnown RBP10.97□□□□□ -0.65
NIPBL-202ENST00000448238 H3BQV1 296 aa10.97□□□□□ -0.65
NIPBL-202ENST00000448238 IFFO2Q5TF58 517 aa10.97□□□□□ -0.65
NIPBL-202ENST00000448238 GOLGA6L10A6NI86 522 aa10.96□□□□□ -0.65
NIPBL-202ENST00000448238 CFAP57Q96MR6 1250 aa10.96□□□□□ -0.65
NIPBL-202ENST00000448238 SEPT7Q16181 437 aaKnown RBP10.96□□□□□ -0.65
NIPBL-202ENST00000448238 PPM1EQ8WY54 764 aa10.96□□□□□ -0.66
NIPBL-202ENST00000448238 HSP90AB2PQ58FF8 381 aa10.96□□□□□ -0.66
NIPBL-202ENST00000448238 RALBP1Q15311 655 aa10.95□□□□□ -0.66
NIPBL-202ENST00000448238 FAM13BQ9NYF5 915 aa10.95□□□□□ -0.66
NIPBL-202ENST00000448238 R3HCC1Q9Y3T6 440 aaKnown RBP10.95□□□□□ -0.66
NIPBL-202ENST00000448238 NF2P35240 595 aa10.95□□□□□ -0.66
NIPBL-202ENST00000448238 RWDD1Q9H446 243 aaPredicted RBP10.95□□□□□ -0.66
NIPBL-202ENST00000448238 LRRFIP1Q32MZ4 808 aaKnown RBP10.95□□□□□ -0.66
NIPBL-202ENST00000448238 CPLX2Q6PUV4 134 aaKnown RBP10.95□□□□□ -0.66
NIPBL-202ENST00000448238 SLKQ9H2G2 1235 aaPredicted RBP10.94□□□□□ -0.66
NIPBL-202ENST00000448238 GIMAP7Q8NHV1 300 aa10.94□□□□□ -0.66
NIPBL-202ENST00000448238 RTF1Q92541 710 aaKnown RBP10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 100.4 ms