RNA–Protein interactions for RNA: ENST00000393452.7

TDP1-202, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 1 (best) BASIC

Gene TDP1, Length 2,370 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-202ENST00000393452 CENPBP07199 599 aaPredicted RBP13.05□□□□□ -0.32
TDP1-202ENST00000393452 DENND4BO75064 1496 aaPredicted RBP13.04□□□□□ -0.32
TDP1-202ENST00000393452 ATP10BO94823 1461 aa13.04□□□□□ -0.32
TDP1-202ENST00000393452 SHROOM2Q13796 1616 aa13.04□□□□□ -0.32
TDP1-202ENST00000393452 ZNF644Q9H582 1327 aaPredicted RBP13.03□□□□□ -0.32
TDP1-202ENST00000393452 CAMSAP2Q08AD1 1489 aa13.03□□□□□ -0.32
TDP1-202ENST00000393452 SCAF1Q9H7N4 1312 aaKnown RBP13.02□□□□□ -0.32
TDP1-202ENST00000393452 ABCC10Q5T3U5 1492 aa13.01□□□□□ -0.33
TDP1-202ENST00000393452 TONSLQ96HA7 1378 aa13.01□□□□□ -0.33
TDP1-202ENST00000393452 PTPRGP23470 1445 aa13.01□□□□□ -0.33
TDP1-202ENST00000393452 CFDP1Q9UEE9 299 aaPredicted RBP13□□□□□ -0.33
TDP1-202ENST00000393452 CDC42BPAQ5VT25 1732 aa13□□□□□ -0.33
TDP1-202ENST00000393452 KDM5BQ9UGL1 1544 aa13□□□□□ -0.33
TDP1-202ENST00000393452 PLEKHD1A6NEE1 506 aa13□□□□□ -0.33
TDP1-202ENST00000393452 CROCC2H7BZ55 1655 aa12.99□□□□□ -0.33
TDP1-202ENST00000393452 ADGBQ8N7X0 1667 aa12.98□□□□□ -0.33
TDP1-202ENST00000393452 ADGRL2O95490 1459 aa12.98□□□□□ -0.33
TDP1-202ENST00000393452 MPHOSPH9Q99550 1183 aa12.97□□□□□ -0.33
TDP1-202ENST00000393452 NCOA1Q15788 1441 aa12.97□□□□□ -0.33
TDP1-202ENST00000393452 TRIM52Q96A61 297 aa12.96□□□□□ -0.33
TDP1-202ENST00000393452 SHANK2Q9UPX8 1470 aa12.93□□□□□ -0.34
TDP1-202ENST00000393452 ANKRD30BQ9BXX2 1392 aa12.92□□□□□ -0.34
TDP1-202ENST00000393452 CLASP1Q7Z460 1538 aa12.92□□□□□ -0.34
TDP1-202ENST00000393452 ERCC6L2Q5T890 1561 aa12.91□□□□□ -0.34
TDP1-202ENST00000393452 YTHDC1Q96MU7 727 aaKnown RBP12.91□□□□□ -0.34
TDP1-202ENST00000393452 ZNF777Q9ULD5 760 aaPredicted RBP12.91□□□□□ -0.34
TDP1-202ENST00000393452 ANKRD30AQ9BXX3 1397 aa12.9□□□□□ -0.34
TDP1-202ENST00000393452 PZPP20742 1482 aa12.9□□□□□ -0.34
TDP1-202ENST00000393452 ABCC2Q92887 1545 aa12.9□□□□□ -0.34
TDP1-202ENST00000393452 ARHGEF5Q12774 1597 aa12.9□□□□□ -0.34
TDP1-202ENST00000393452 PREX2Q70Z35 1606 aa12.89□□□□□ -0.35
TDP1-202ENST00000393452 CDC42BPBQ9Y5S2 1711 aa12.89□□□□□ -0.35
TDP1-202ENST00000393452 RPRD2Q5VT52 1461 aaKnown RBP12.89□□□□□ -0.35
TDP1-202ENST00000393452 C9orf84Q5VXU9 1444 aa12.88□□□□□ -0.35
TDP1-202ENST00000393452 MBD5Q9P267 1494 aa12.88□□□□□ -0.35
TDP1-202ENST00000393452 ANKRD50Q9ULJ7 1429 aa12.87□□□□□ -0.35
TDP1-202ENST00000393452 SAMD9LQ8IVG5 1584 aa12.86□□□□□ -0.35
TDP1-202ENST00000393452 FOXD1Q16676 465 aa12.86□□□□□ -0.35
TDP1-202ENST00000393452 SLC4A1APQ9BWU0 796 aaKnown RBP12.86□□□□□ -0.35
TDP1-202ENST00000393452 TEX14Q8IWB6 1497 aa12.85□□□□□ -0.35
TDP1-202ENST00000393452 DDX10Q13206 875 aaKnown RBP12.85□□□□□ -0.35
TDP1-202ENST00000393452 GTF3C3Q9Y5Q9 886 aa12.85□□□□□ -0.35
TDP1-202ENST00000393452 UHRF1BP1LA0JNW5 1464 aa12.84□□□□□ -0.35
TDP1-202ENST00000393452 TTC37Q6PGP7 1564 aa12.84□□□□□ -0.35
TDP1-202ENST00000393452 L3MBTL2Q969R5 705 aa12.84□□□□□ -0.35
TDP1-202ENST00000393452 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP12.84□□□□□ -0.35
TDP1-202ENST00000393452 HIRIP3Q9BW71 556 aaPredicted RBP12.84□□□□□ -0.35
TDP1-202ENST00000393452 RSPH4AQ5TD94 716 aa12.83□□□□□ -0.36
TDP1-202ENST00000393452 KIAA1107Q9UPP5 1409 aa12.83□□□□□ -0.36
TDP1-202ENST00000393452 KDM5DQ9BY66 1539 aa12.83□□□□□ -0.36
TDP1-202ENST00000393452 CCDC141Q6ZP82 1450 aa12.83□□□□□ -0.36
TDP1-202ENST00000393452 TSPY4P0CV99 314 aa12.82□□□□□ -0.36
TDP1-202ENST00000393452 TSPY10P0CW01 314 aa12.82□□□□□ -0.36
TDP1-202ENST00000393452 HNRNPMP52272 730 aaKnown RBP eCLIP12.81□□□□□ -0.36
TDP1-202ENST00000393452 MYO5CQ9NQX4 1742 aa12.81□□□□□ -0.36
TDP1-202ENST00000393452 ZCCHC11Q5TAX3 1644 aaKnown RBP12.8□□□□□ -0.36
TDP1-202ENST00000393452 MAST1Q9Y2H9 1570 aa12.8□□□□□ -0.36
TDP1-202ENST00000393452 KIF15Q9NS87 1388 aa12.8□□□□□ -0.36
TDP1-202ENST00000393452 ARHGAP5Q13017 1502 aa12.79□□□□□ -0.36
TDP1-202ENST00000393452 SYCP2Q9BX26 1530 aa12.78□□□□□ -0.36
TDP1-202ENST00000393452 PLEKHH2Q8IVE3 1493 aa12.78□□□□□ -0.36
TDP1-202ENST00000393452 PKD2Q13563 968 aa12.77□□□□□ -0.36
TDP1-202ENST00000393452 NUP155O75694 1391 aa12.77□□□□□ -0.37
TDP1-202ENST00000393452 HSPA5P11021 654 aaKnown RBP12.77□□□□□ -0.37
TDP1-202ENST00000393452 EIF4G2P78344 907 aaKnown RBP eCLIP12.77□□□□□ -0.37
TDP1-202ENST00000393452 NBPF8Q3BBV2 869 aa12.76□□□□□ -0.37
TDP1-202ENST00000393452 PLCH2O75038 1416 aa12.75□□□□□ -0.37
TDP1-202ENST00000393452 PLXNC1O60486 1568 aa12.75□□□□□ -0.37
TDP1-202ENST00000393452 CCER2I3L3R5 266 aa12.74□□□□□ -0.37
TDP1-202ENST00000393452 KCNH8Q96L42 1107 aa12.74□□□□□ -0.37
TDP1-202ENST00000393452 WASHC2AQ641Q2 1341 aa12.73□□□□□ -0.37
TDP1-202ENST00000393452 SPATA31E1Q6ZUB1 1445 aa12.73□□□□□ -0.37
TDP1-202ENST00000393452 ANP32CO43423 234 aa12.72□□□□□ -0.37
TDP1-202ENST00000393452 PELP1Q8IZL8 1130 aaKnown RBP12.72□□□□□ -0.37
TDP1-202ENST00000393452 UNC13BO14795 1591 aa12.72□□□□□ -0.37
TDP1-202ENST00000393452 ARHGEF12Q9NZN5 1544 aa12.72□□□□□ -0.37
TDP1-202ENST00000393452 ARAP3Q8WWN8 1544 aa12.72□□□□□ -0.37
TDP1-202ENST00000393452 FAM135AQ9P2D6 1515 aa12.72□□□□□ -0.37
TDP1-202ENST00000393452 POLR1AO95602 1720 aaPredicted RBP12.71□□□□□ -0.38
TDP1-202ENST00000393452 ABCC1P33527 1531 aa12.7□□□□□ -0.38
TDP1-202ENST00000393452 UHRF1BP1Q6BDS2 1440 aa12.7□□□□□ -0.38
TDP1-202ENST00000393452 EFCAB2Q5VUJ9 269 aa12.69□□□□□ -0.38
TDP1-202ENST00000393452 DUOX2Q9NRD8 1548 aa12.68□□□□□ -0.38
TDP1-202ENST00000393452 IQGAP3Q86VI3 1631 aa12.67□□□□□ -0.38
TDP1-202ENST00000393452 CCDC7Q96M83 1385 aa12.67□□□□□ -0.38
TDP1-202ENST00000393452 MAGI2Q86UL8 1455 aa12.67□□□□□ -0.38
TDP1-202ENST00000393452 WDR7Q9Y4E6 1490 aa12.67□□□□□ -0.38
TDP1-202ENST00000393452 C11orf95C9JLR9 678 aaPredicted RBP12.66□□□□□ -0.38
TDP1-202ENST00000393452 ERBINQ96RT1 1412 aa12.66□□□□□ -0.38
TDP1-202ENST00000393452 CNTLNQ9NXG0 1405 aa12.66□□□□□ -0.38
TDP1-202ENST00000393452 TRAPPC8Q9Y2L5 1435 aa12.65□□□□□ -0.38
TDP1-202ENST00000393452 RALGAPBQ86X10 1494 aa12.65□□□□□ -0.39
TDP1-202ENST00000393452 OSCARQ8IYS5 282 aa12.64□□□□□ -0.39
TDP1-202ENST00000393452 ABCA9Q8IUA7 1624 aa12.64□□□□□ -0.39
TDP1-202ENST00000393452 KDM5CP41229 1560 aa12.64□□□□□ -0.39
TDP1-202ENST00000393452 RTEL1-TNFRSF6BF6WH68 1400 aa12.63□□□□□ -0.39
TDP1-202ENST00000393452 PLA2R1Q13018 1463 aa12.62□□□□□ -0.39
TDP1-202ENST00000393452 KIF7Q2M1P5 1343 aa12.62□□□□□ -0.39
TDP1-202ENST00000393452 ATP10AO60312 1499 aa12.62□□□□□ -0.39
TDP1-202ENST00000393452 USP47Q96K76 1375 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 70.8 ms