RNA–Protein interactions for RNA: ENST00000380180.7

PDLIM5-205, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 2,020 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-205ENST00000380180 ABCC5O15440 1437 aa29.09■■■□□ 2.25
PDLIM5-205ENST00000380180 ZNF777Q9ULD5 760 aaPredicted RBP29.05■■■□□ 2.24
PDLIM5-205ENST00000380180 UHRF1BP1LA0JNW5 1464 aa29.03■■■□□ 2.24
PDLIM5-205ENST00000380180 ROCK1Q13464 1354 aa29.01■■■□□ 2.23
PDLIM5-205ENST00000380180 KDM6BO15054 1643 aa29■■■□□ 2.23
PDLIM5-205ENST00000380180 ZCCHC11Q5TAX3 1644 aaKnown RBP29■■■□□ 2.23
PDLIM5-205ENST00000380180 OSCARQ8IYS5 282 aa28.98■■■□□ 2.23
PDLIM5-205ENST00000380180 ZNF316A6NFI3 1004 aaPredicted RBP28.98■■■□□ 2.23
PDLIM5-205ENST00000380180 CDC42BPBQ9Y5S2 1711 aa28.97■■■□□ 2.23
PDLIM5-205ENST00000380180 CROCC2H7BZ55 1655 aa28.97■■■□□ 2.23
PDLIM5-205ENST00000380180 KDM5BQ9UGL1 1544 aa28.95■■■□□ 2.23
PDLIM5-205ENST00000380180 SIN3AQ96ST3 1273 aa28.95■■■□□ 2.23
PDLIM5-205ENST00000380180 ADGBQ8N7X0 1667 aa28.94■■■□□ 2.22
PDLIM5-205ENST00000380180 PREX2Q70Z35 1606 aa28.94■■■□□ 2.22
PDLIM5-205ENST00000380180 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP28.91■■■□□ 2.22
PDLIM5-205ENST00000380180 TTC37Q6PGP7 1564 aa28.91■■■□□ 2.22
PDLIM5-205ENST00000380180 NEUROD1Q13562 356 aa28.89■■■□□ 2.22
PDLIM5-205ENST00000380180 TRIM52Q96A61 297 aa28.87■■■□□ 2.21
PDLIM5-205ENST00000380180 KCNH8Q96L42 1107 aa28.86■■■□□ 2.21
PDLIM5-205ENST00000380180 NCOA1Q15788 1441 aa28.86■■■□□ 2.21
PDLIM5-205ENST00000380180 MYO5CQ9NQX4 1742 aa28.86■■■□□ 2.21
PDLIM5-205ENST00000380180 ADGRL2O95490 1459 aa28.85■■■□□ 2.21
PDLIM5-205ENST00000380180 SAMD9LQ8IVG5 1584 aa28.84■■■□□ 2.21
PDLIM5-205ENST00000380180 DIEXFQ68CQ4 756 aaKnown RBP28.81■■■□□ 2.2
PDLIM5-205ENST00000380180 ARHGEF5Q12774 1597 aa28.81■■■□□ 2.2
PDLIM5-205ENST00000380180 HNRNPMP52272 730 aaKnown RBP eCLIP28.81■■■□□ 2.25e-6■■■□□ 18.5
PDLIM5-205ENST00000380180 ACIN1Q9UKV3 1341 aaKnown RBP28.8■■■□□ 2.2
PDLIM5-205ENST00000380180 TIMELESSQ9UNS1 1208 aa28.8■■■□□ 2.2
PDLIM5-205ENST00000380180 SHANK2Q9UPX8 1470 aa28.79■■■□□ 2.2
PDLIM5-205ENST00000380180 ARHGAP5Q13017 1502 aa28.79■■■□□ 2.2
PDLIM5-205ENST00000380180 ANKRD30AQ9BXX3 1397 aa28.79■■■□□ 2.2
PDLIM5-205ENST00000380180 DENND4BO75064 1496 aaPredicted RBP28.79■■■□□ 2.2
PDLIM5-205ENST00000380180 MBD5Q9P267 1494 aa28.79■■■□□ 2.2
PDLIM5-205ENST00000380180 C9orf84Q5VXU9 1444 aa28.76■■■□□ 2.2
PDLIM5-205ENST00000380180 MPHOSPH9Q99550 1183 aa28.76■■■□□ 2.19
PDLIM5-205ENST00000380180 TSPY4P0CV99 314 aa28.76■■■□□ 2.19
PDLIM5-205ENST00000380180 TSPY10P0CW01 314 aa28.76■■■□□ 2.19
PDLIM5-205ENST00000380180 CCDC141Q6ZP82 1450 aa28.71■■■□□ 2.19
PDLIM5-205ENST00000380180 RSPH4AQ5TD94 716 aa28.7■■■□□ 2.19
PDLIM5-205ENST00000380180 PLCH2O75038 1416 aa28.7■■■□□ 2.19
PDLIM5-205ENST00000380180 SYCP2Q9BX26 1530 aa28.7■■■□□ 2.18
PDLIM5-205ENST00000380180 WDR7Q9Y4E6 1490 aa28.68■■■□□ 2.18
PDLIM5-205ENST00000380180 ANKRD50Q9ULJ7 1429 aa28.66■■■□□ 2.18
PDLIM5-205ENST00000380180 TONSLQ96HA7 1378 aa28.65■■■□□ 2.18
PDLIM5-205ENST00000380180 PPP1R15AO75807 674 aaPredicted RBP28.65■■■□□ 2.18
PDLIM5-205ENST00000380180 PLEKHH2Q8IVE3 1493 aa28.64■■■□□ 2.18
PDLIM5-205ENST00000380180 KIAA1107Q9UPP5 1409 aa28.64■■■□□ 2.17
PDLIM5-205ENST00000380180 EFCAB2Q5VUJ9 269 aa28.62■■■□□ 2.17
PDLIM5-205ENST00000380180 SLC4A1APQ9BWU0 796 aaKnown RBP28.62■■■□□ 2.17
PDLIM5-205ENST00000380180 FOXD1Q16676 465 aa28.61■■■□□ 2.17
PDLIM5-205ENST00000380180 PZPP20742 1482 aa28.6■■■□□ 2.17
PDLIM5-205ENST00000380180 KIF15Q9NS87 1388 aa28.6■■■□□ 2.17
PDLIM5-205ENST00000380180 MAST1Q9Y2H9 1570 aa28.59■■■□□ 2.17
PDLIM5-205ENST00000380180 ASXL2Q76L83 1435 aa28.58■■■□□ 2.17
PDLIM5-205ENST00000380180 ARHGEF12Q9NZN5 1544 aa28.58■■■□□ 2.17
PDLIM5-205ENST00000380180 ARAP3Q8WWN8 1544 aa28.56■■■□□ 2.16
PDLIM5-205ENST00000380180 ABCA9Q8IUA7 1624 aa28.56■■■□□ 2.16
PDLIM5-205ENST00000380180 ANKRD30BQ9BXX2 1392 aa28.54■■■□□ 2.16
PDLIM5-205ENST00000380180 ABCC1P33527 1531 aa28.54■■■□□ 2.16
PDLIM5-205ENST00000380180 NPM1P06748 294 aaKnown RBP eCLIP28.54■■■□□ 2.16
PDLIM5-205ENST00000380180 PLXNC1O60486 1568 aa28.49■■■□□ 2.15
PDLIM5-205ENST00000380180 NUP155O75694 1391 aa28.47■■■□□ 2.15
PDLIM5-205ENST00000380180 TRAPPC8Q9Y2L5 1435 aa28.46■■■□□ 2.15
PDLIM5-205ENST00000380180 KDM5DQ9BY66 1539 aa28.45■■■□□ 2.15
PDLIM5-205ENST00000380180 RPRD2Q5VT52 1461 aaKnown RBP28.44■■■□□ 2.14
PDLIM5-205ENST00000380180 PKD2Q13563 968 aa28.43■■■□□ 2.14
PDLIM5-205ENST00000380180 FANCAO15360 1455 aa28.43■■■□□ 2.14
PDLIM5-205ENST00000380180 DUOX2Q9NRD8 1548 aa28.38■■■□□ 2.13
PDLIM5-205ENST00000380180 L3MBTL2Q969R5 705 aa28.38■■■□□ 2.13
PDLIM5-205ENST00000380180 AFAP1Q8N556 730 aa28.37■■■□□ 2.13
PDLIM5-205ENST00000380180 UNC13BO14795 1591 aa28.34■■■□□ 2.13
PDLIM5-205ENST00000380180 SPAG9O60271 1321 aaKnown RBP28.33■■■□□ 2.13
PDLIM5-205ENST00000380180 FAM135AQ9P2D6 1515 aa28.33■■■□□ 2.13
PDLIM5-205ENST00000380180 RTEL1-TNFRSF6BF6WH68 1400 aa28.32■■■□□ 2.12
PDLIM5-205ENST00000380180 ADGRL1O94910 1474 aa28.32■■■□□ 2.12
PDLIM5-205ENST00000380180 MIER1Q8N108 512 aa28.31■■■□□ 2.12
PDLIM5-205ENST00000380180 RIMBP3CA6NJZ7 1639 aa28.31■■■□□ 2.12
PDLIM5-205ENST00000380180 RIMBP3BA6NNM3 1639 aa28.31■■■□□ 2.12
PDLIM5-205ENST00000380180 RIMBP3Q9UFD9 1639 aa28.31■■■□□ 2.12
PDLIM5-205ENST00000380180 TEX14Q8IWB6 1497 aa28.31■■■□□ 2.12
PDLIM5-205ENST00000380180 ERBINQ96RT1 1412 aa28.3■■■□□ 2.12
PDLIM5-205ENST00000380180 ZFYVE16Q7Z3T8 1539 aa28.29■■■□□ 2.12
PDLIM5-205ENST00000380180 SCAPERQ9BY12 1400 aa28.29■■■□□ 2.12
PDLIM5-205ENST00000380180 CYB5RLQ6IPT4 315 aa28.29■■■□□ 2.12
PDLIM5-205ENST00000380180 CD109Q6YHK3 1445 aa28.27■■■□□ 2.12
PDLIM5-205ENST00000380180 HIRIP3Q9BW71 556 aaPredicted RBP28.26■■■□□ 2.12
PDLIM5-205ENST00000380180 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.25■■■□□ 2.112e-6■■□□□ 12.3
PDLIM5-205ENST00000380180 IQGAP3Q86VI3 1631 aa28.25■■■□□ 2.11
PDLIM5-205ENST00000380180 INO80Q9ULG1 1556 aaPredicted RBP28.25■■■□□ 2.11
PDLIM5-205ENST00000380180 ATP7AQ04656 1500 aa28.23■■■□□ 2.11
PDLIM5-205ENST00000380180 CFAP74Q9C0B2 1584 aa28.21■■■□□ 2.11
PDLIM5-205ENST00000380180 MAGI2Q86UL8 1455 aa28.21■■■□□ 2.11
PDLIM5-205ENST00000380180 NBPF8Q3BBV2 869 aa28.18■■■□□ 2.1
PDLIM5-205ENST00000380180 MYT1LQ9UL68 1186 aa28.15■■■□□ 2.1
PDLIM5-205ENST00000380180 KIDINS220Q9ULH0 1771 aa28.14■■■□□ 2.1
PDLIM5-205ENST00000380180 ZNF518AQ6AHZ1 1483 aa28.13■■■□□ 2.09
PDLIM5-205ENST00000380180 DEPDC5O75140 1603 aa28.1■■■□□ 2.09
PDLIM5-205ENST00000380180 DDX10Q13206 875 aaKnown RBP28.09■■■□□ 2.09
PDLIM5-205ENST00000380180 MAP3K4Q9Y6R4 1608 aa28.08■■■□□ 2.09
PDLIM5-205ENST00000380180 HSPA5P11021 654 aaKnown RBP28.08■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms