RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 RGS3P49796 1198 aa12.49□□□□□ -0.41
CHD3-202ENST00000358181 TCEAL9Q9UHQ7 104 aa12.48□□□□□ -0.41
CHD3-202ENST00000358181 CTDP1Q9Y5B0 961 aaPredicted RBP12.48□□□□□ -0.41
CHD3-202ENST00000358181 FRAT2O75474 233 aaPredicted RBP12.48□□□□□ -0.41
CHD3-202ENST00000358181 UTP3Q9NQZ2 479 aaKnown RBP eCLIP12.48□□□□□ -0.413e-7■■■■■ 116.6
CHD3-202ENST00000358181 MEX3CQ5U5Q3 659 aaKnown RBP12.47□□□□□ -0.41
CHD3-202ENST00000358181 TAF7LQ5H9L4 462 aa12.47□□□□□ -0.41
CHD3-202ENST00000358181 SAFB2Q14151 953 aaKnown RBP eCLIP12.46□□□□□ -0.41
CHD3-202ENST00000358181 GORABQ5T7V8 394 aa12.46□□□□□ -0.41
CHD3-202ENST00000358181 PES1O00541 588 aaKnown RBP12.46□□□□□ -0.42
CHD3-202ENST00000358181 TOMM22Q9NS69 142 aa12.45□□□□□ -0.42
CHD3-202ENST00000358181 WDR70Q9NW82 654 aa12.43□□□□□ -0.42
CHD3-202ENST00000358181 ZCCHC6Q5VYS8 1495 aaKnown RBP12.43□□□□□ -0.42
CHD3-202ENST00000358181 GTF2E1P29083 439 aaPredicted RBP12.43□□□□□ -0.42
CHD3-202ENST00000358181 TNNT3P45378 269 aaPredicted RBP12.42□□□□□ -0.42
CHD3-202ENST00000358181 MYO15BQ96JP2 1530 aa12.42□□□□□ -0.42
CHD3-202ENST00000358181 PLEKHD1A6NEE1 506 aa12.41□□□□□ -0.42
CHD3-202ENST00000358181 TRIM34Q9BYJ4 488 aa12.41□□□□□ -0.42
CHD3-202ENST00000358181 CC2D1BQ5T0F9 858 aaKnown RBP12.4□□□□□ -0.42
CHD3-202ENST00000358181 MSNP26038 577 aaKnown RBP12.4□□□□□ -0.42
CHD3-202ENST00000358181 PPM1FP49593 454 aaPredicted RBP12.4□□□□□ -0.42
CHD3-202ENST00000358181 KNSTRNQ9Y448 316 aa12.4□□□□□ -0.42
CHD3-202ENST00000358181 CLIP1P30622 1438 aa12.39□□□□□ -0.43
CHD3-202ENST00000358181 SIN3AQ96ST3 1273 aa12.39□□□□□ -0.43
CHD3-202ENST00000358181 GOLGA6L1Q8N7Z2 621 aa12.39□□□□□ -0.43
CHD3-202ENST00000358181 RTF1Q92541 710 aaKnown RBP12.39□□□□□ -0.43
CHD3-202ENST00000358181 MCCP23508 829 aa12.39□□□□□ -0.43
CHD3-202ENST00000358181 ERCC6Q03468 1493 aa12.38□□□□□ -0.43
CHD3-202ENST00000358181 PAF1Q8N7H5 531 aa12.38□□□□□ -0.43
CHD3-202ENST00000358181 NUDCQ9Y266 331 aa12.37□□□□□ -0.43
CHD3-202ENST00000358181 AK7Q96M32 723 aa12.37□□□□□ -0.43
CHD3-202ENST00000358181 CFDP1Q9UEE9 299 aaPredicted RBP12.37□□□□□ -0.43
CHD3-202ENST00000358181 PPP1R1BQ9UD71 204 aaPredicted RBP12.36□□□□□ -0.43
CHD3-202ENST00000358181 NOL8Q76FK4 1167 aaKnown RBP12.35□□□□□ -0.43
CHD3-202ENST00000358181 KIAA1211Q6ZU35 1233 aa12.35□□□□□ -0.43
CHD3-202ENST00000358181 CALRP27797 417 aaKnown RBP12.35□□□□□ -0.43
CHD3-202ENST00000358181 CARD11Q9BXL7 1154 aa12.34□□□□□ -0.43
CHD3-202ENST00000358181 EIF4G1Q04637 1599 aaKnown RBP12.34□□□□□ -0.43
CHD3-202ENST00000358181 STK26Q9P289 416 aa12.33□□□□□ -0.43
CHD3-202ENST00000358181 HSCBQ8IWL3 235 aa12.33□□□□□ -0.44
CHD3-202ENST00000358181 SRPK2P78362 688 aaKnown RBP12.33□□□□□ -0.44
CHD3-202ENST00000358181 TPM4P67936 248 aa12.32□□□□□ -0.44
CHD3-202ENST00000358181 IBSPP21815 317 aaPredicted RBP12.31□□□□□ -0.44
CHD3-202ENST00000358181 FOXD1Q16676 465 aa12.31□□□□□ -0.44
CHD3-202ENST00000358181 TPD52L1Q16890 204 aaPredicted RBP12.31□□□□□ -0.44
CHD3-202ENST00000358181 SUPT16HQ9Y5B9 1047 aaKnown RBP12.31□□□□□ -0.44
CHD3-202ENST00000358181 CCAR2Q8N163 923 aaKnown RBP12.29□□□□□ -0.44
CHD3-202ENST00000358181 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.28□□□□□ -0.44
CHD3-202ENST00000358181 CEP162Q5TB80 1403 aa12.28□□□□□ -0.44
CHD3-202ENST00000358181 TPM3P06753 285 aa12.27□□□□□ -0.44
CHD3-202ENST00000358181 DHX16O60231 1041 aaKnown RBP12.27□□□□□ -0.44
CHD3-202ENST00000358181 NUTM2DQ5VT03 806 aaPredicted RBP12.27□□□□□ -0.45
CHD3-202ENST00000358181 B4GALNT3Q6L9W6 998 aa12.27□□□□□ -0.45
CHD3-202ENST00000358181 PCMTD1Q96MG8 357 aaPredicted RBP12.27□□□□□ -0.45
CHD3-202ENST00000358181 GZF1Q9H116 711 aaPredicted RBP12.27□□□□□ -0.45
CHD3-202ENST00000358181 FOXD4L5Q5VV16 416 aaPredicted RBP12.26□□□□□ -0.45
CHD3-202ENST00000358181 FOXD4L4Q8WXT5 416 aaPredicted RBP12.26□□□□□ -0.45
CHD3-202ENST00000358181 RRP12Q5JTH9 1297 aaKnown RBP12.26□□□□□ -0.45
CHD3-202ENST00000358181 CCDC97Q96F63 343 aaPredicted RBP12.26□□□□□ -0.45
CHD3-202ENST00000358181 LTV1Q96GA3 475 aaPredicted RBP12.26□□□□□ -0.45
CHD3-202ENST00000358181 TRIM6-TRIM34B2RNG4 842 aa12.26□□□□□ -0.45
CHD3-202ENST00000358181 SLC4A3P48751 1232 aa12.26□□□□□ -0.45
CHD3-202ENST00000358181 TMEM132AQ24JP5 1023 aa12.26□□□□□ -0.45
CHD3-202ENST00000358181 SETQ01105 290 aaPredicted RBP12.25□□□□□ -0.45
CHD3-202ENST00000358181 PPP4R2Q9NY27 417 aa12.25□□□□□ -0.45
CHD3-202ENST00000358181 BAZ1BQ9UIG0 1483 aaKnown RBP12.25□□□□□ -0.45
CHD3-202ENST00000358181 GGT6Q6P531 493 aa12.25□□□□□ -0.45
CHD3-202ENST00000358181 FOXD4L1Q9NU39 408 aa12.25□□□□□ -0.45
CHD3-202ENST00000358181 EVA1CP58658 441 aa12.24□□□□□ -0.45
CHD3-202ENST00000358181 CCDC43Q96MW1 224 aaKnown RBP12.24□□□□□ -0.45
CHD3-202ENST00000358181 DCAF11Q8TEB1 546 aa12.24□□□□□ -0.45
CHD3-202ENST00000358181 DCAF1Q9Y4B6 1507 aa12.24□□□□□ -0.45
CHD3-202ENST00000358181 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.24□□□□□ -0.45
CHD3-202ENST00000358181 SYTL4Q96C24 671 aaPredicted RBP12.24□□□□□ -0.45
CHD3-202ENST00000358181 CCAR1Q8IX12 1150 aaKnown RBP12.24□□□□□ -0.45
CHD3-202ENST00000358181 PRKCSHP14314 528 aaPredicted RBP12.23□□□□□ -0.45
CHD3-202ENST00000358181 RB1CC1Q8TDY2 1594 aa12.23□□□□□ -0.45
CHD3-202ENST00000358181 ZFYVE27Q5T4F4 411 aa12.23□□□□□ -0.45
CHD3-202ENST00000358181 NGEFQ8N5V2 710 aa12.23□□□□□ -0.45
CHD3-202ENST00000358181 NOL10Q9BSC4 688 aaKnown RBP12.21□□□□□ -0.46
CHD3-202ENST00000358181 PTMSP20962 102 aa12.2□□□□□ -0.46
CHD3-202ENST00000358181 NUTM2FA1L443 756 aa12.2□□□□□ -0.46
CHD3-202ENST00000358181 GOLGA3Q08378 1498 aa12.2□□□□□ -0.46
CHD3-202ENST00000358181 RSF1Q96T23 1441 aaPredicted RBP12.2□□□□□ -0.46
CHD3-202ENST00000358181 ODF2Q5BJF6 829 aa12.2□□□□□ -0.46
CHD3-202ENST00000358181 SLC4A10Q6U841 1118 aa12.2□□□□□ -0.46
CHD3-202ENST00000358181 CHMP4BQ9H444 224 aaKnown RBP12.19□□□□□ -0.46
CHD3-202ENST00000358181 MTMR7Q9Y216 660 aa12.19□□□□□ -0.46
CHD3-202ENST00000358181 WRNQ14191 1432 aaPredicted RBP eCLIP12.19□□□□□ -0.46
CHD3-202ENST00000358181 TPM2P07951 284 aa12.19□□□□□ -0.46
CHD3-202ENST00000358181 GPATCH3Q96I76 525 aa12.18□□□□□ -0.46
CHD3-202ENST00000358181 HTATSF1O43719 755 aaKnown RBP12.18□□□□□ -0.46
CHD3-202ENST00000358181 TSR1Q2NL82 804 aaKnown RBP12.18□□□□□ -0.46
CHD3-202ENST00000358181 PLCD3Q8N3E9 789 aa12.18□□□□□ -0.46
CHD3-202ENST00000358181 R3HCC1Q9Y3T6 440 aaKnown RBP12.18□□□□□ -0.46
CHD3-202ENST00000358181 CDCA8Q53HL2 280 aa12.18□□□□□ -0.46
CHD3-202ENST00000358181 CT47A1Q5JQC4 288 aaPredicted RBP12.18□□□□□ -0.46
CHD3-202ENST00000358181 SF3A1Q15459 793 aaKnown RBP12.18□□□□□ -0.46
CHD3-202ENST00000358181 CCDC34Q96HJ3 373 aa12.18□□□□□ -0.46
CHD3-202ENST00000358181 DEKP35659 375 aaKnown RBP12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms