RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 CFAP53Q96M91 514 aa9.55□□□□□ -0.88
VPS13A-202ENST00000357409 TCERG1O14776 1098 aaKnown RBP9.55□□□□□ -0.88
VPS13A-202ENST00000357409 KDM4AO75164 1064 aa9.55□□□□□ -0.88
VPS13A-202ENST00000357409 SCRIBQ14160 1630 aa9.54□□□□□ -0.88
VPS13A-202ENST00000357409 BCL11BQ9C0K0 894 aaPredicted RBP9.54□□□□□ -0.88
VPS13A-202ENST00000357409 HSP90AB1P08238 724 aaKnown RBP9.54□□□□□ -0.88
VPS13A-202ENST00000357409 GZF1Q9H116 711 aaPredicted RBP9.54□□□□□ -0.88
VPS13A-202ENST00000357409 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.53□□□□□ -0.882e-6■■□□□ 12.7
VPS13A-202ENST00000357409 CLUAP1Q96AJ1 413 aa9.53□□□□□ -0.88
VPS13A-202ENST00000357409 FRAT2O75474 233 aaPredicted RBP9.52□□□□□ -0.88
VPS13A-202ENST00000357409 RTF1Q92541 710 aaKnown RBP9.52□□□□□ -0.89
VPS13A-202ENST00000357409 FBXW7Q969H0 707 aa9.52□□□□□ -0.89
VPS13A-202ENST00000357409 FAM177BA6PVY3 158 aa9.52□□□□□ -0.89
VPS13A-202ENST00000357409 TAF7LQ5H9L4 462 aa9.5□□□□□ -0.89
VPS13A-202ENST00000357409 VPS53Q5VIR6 699 aa9.5□□□□□ -0.89
VPS13A-202ENST00000357409 GTF2E1P29083 439 aaPredicted RBP9.5□□□□□ -0.89
VPS13A-202ENST00000357409 NUDCQ9Y266 331 aa9.5□□□□□ -0.89
VPS13A-202ENST00000357409 HSP90B1P14625 803 aaKnown RBP9.5□□□□□ -0.89
VPS13A-202ENST00000357409 EVA1CP58658 441 aa9.5□□□□□ -0.89
VPS13A-202ENST00000357409 TOMM22Q9NS69 142 aa9.49□□□□□ -0.89
VPS13A-202ENST00000357409 HNRNPMP52272 730 aaKnown RBP eCLIP9.49□□□□□ -0.892e-7■■■■□ 26.4
VPS13A-202ENST00000357409 RRP7AQ9Y3A4 280 aaKnown RBP9.48□□□□□ -0.89
VPS13A-202ENST00000357409 MTMR7Q9Y216 660 aa9.48□□□□□ -0.89
VPS13A-202ENST00000357409 NUTM2GQ5VZR2 741 aa9.48□□□□□ -0.89
VPS13A-202ENST00000357409 NAP1L5Q96NT1 182 aaPredicted RBP9.48□□□□□ -0.89
VPS13A-202ENST00000357409 USP35Q9P2H5 1018 aa9.48□□□□□ -0.89
VPS13A-202ENST00000357409 MORC1Q86VD1 984 aa9.48□□□□□ -0.89
VPS13A-202ENST00000357409 TRAK1Q9UPV9 953 aa9.48□□□□□ -0.89
VPS13A-202ENST00000357409 SLC4A3P48751 1232 aa9.47□□□□□ -0.89
VPS13A-202ENST00000357409 BCL2L13Q9BXK5 485 aa9.47□□□□□ -0.89
VPS13A-202ENST00000357409 DRC7Q8IY82 874 aa9.47□□□□□ -0.89
VPS13A-202ENST00000357409 CHMP4CQ96CF2 233 aa9.47□□□□□ -0.89
VPS13A-202ENST00000357409 GORABQ5T7V8 394 aa9.47□□□□□ -0.89
VPS13A-202ENST00000357409 NGDNQ8NEJ9 315 aaKnown RBP9.47□□□□□ -0.89
VPS13A-202ENST00000357409 MEX3CQ5U5Q3 659 aaKnown RBP9.46□□□□□ -0.9
VPS13A-202ENST00000357409 CASC1Q6TDU7 716 aa9.46□□□□□ -0.9
VPS13A-202ENST00000357409 U2AF1L5P0DN76 240 aaPredicted RBP9.45□□□□□ -0.9
VPS13A-202ENST00000357409 U2AF1Q01081 240 aaKnown RBP eCLIP9.45□□□□□ -0.93e-6■□□□□ 8.7
VPS13A-202ENST00000357409 GNL2Q13823 731 aaKnown RBP9.45□□□□□ -0.9
VPS13A-202ENST00000357409 TRIM6-TRIM34B2RNG4 842 aa9.44□□□□□ -0.9
VPS13A-202ENST00000357409 KIF3BO15066 747 aa9.44□□□□□ -0.9
VPS13A-202ENST00000357409 TMX4Q9H1E5 349 aaPredicted RBP9.44□□□□□ -0.9
VPS13A-202ENST00000357409 EIF2S2P20042 333 aaKnown RBP9.43□□□□□ -0.9
VPS13A-202ENST00000357409 STK11IPQ8N1F8 1099 aa9.43□□□□□ -0.9
VPS13A-202ENST00000357409 GOLGA6L4A6NEF3 574 aa9.43□□□□□ -0.9
VPS13A-202ENST00000357409 IBSPP21815 317 aaPredicted RBP9.43□□□□□ -0.9
VPS13A-202ENST00000357409 BECN1Q14457 450 aa9.43□□□□□ -0.9
VPS13A-202ENST00000357409 NUTM2BA6NNL0 878 aaPredicted RBP9.43□□□□□ -0.9
VPS13A-202ENST00000357409 NUTM2EB1AL46 878 aaPredicted RBP9.43□□□□□ -0.9
VPS13A-202ENST00000357409 NUTM2AQ8IVF1 878 aaPredicted RBP9.43□□□□□ -0.9
VPS13A-202ENST00000357409 ZCCHC6Q5VYS8 1495 aaKnown RBP9.42□□□□□ -0.9
VPS13A-202ENST00000357409 BAZ1BQ9UIG0 1483 aaKnown RBP9.42□□□□□ -0.9
VPS13A-202ENST00000357409 GOLGA6L22H0YM25 854 aa9.41□□□□□ -0.9
VPS13A-202ENST00000357409 SLKQ9H2G2 1235 aaPredicted RBP9.41□□□□□ -0.9
VPS13A-202ENST00000357409 AMPHP49418 695 aa9.41□□□□□ -0.9
VPS13A-202ENST00000357409 ERCC6Q03468 1493 aa9.41□□□□□ -0.9
VPS13A-202ENST00000357409 FOSBP53539 338 aa9.4□□□□□ -0.9
VPS13A-202ENST00000357409 ITPRIPQ8IWB1 547 aa9.4□□□□□ -0.9
VPS13A-202ENST00000357409 PIP4K2BP78356 416 aa9.4□□□□□ -0.9
VPS13A-202ENST00000357409 FYB1O15117 783 aa9.39□□□□□ -0.91
VPS13A-202ENST00000357409 PLIN1O60240 522 aa9.39□□□□□ -0.91
VPS13A-202ENST00000357409 PES1O00541 588 aaKnown RBP9.38□□□□□ -0.91
VPS13A-202ENST00000357409 TMF1P82094 1093 aa9.38□□□□□ -0.91
VPS13A-202ENST00000357409 MFAP1P55081 439 aaKnown RBP9.38□□□□□ -0.91
VPS13A-202ENST00000357409 WWC3Q9ULE0 1092 aa9.38□□□□□ -0.91
VPS13A-202ENST00000357409 MARCH6O60337 910 aa9.37□□□□□ -0.91
VPS13A-202ENST00000357409 RILPL2Q969X0 211 aa9.37□□□□□ -0.91
VPS13A-202ENST00000357409 PKD2Q13563 968 aa9.37□□□□□ -0.91
VPS13A-202ENST00000357409 RASSF8Q8NHQ8 419 aa9.36□□□□□ -0.91
VPS13A-202ENST00000357409 RBM33Q96EV2 1170 aaKnown RBP9.36□□□□□ -0.91
VPS13A-202ENST00000357409 ECM2O94769 699 aaPredicted RBP9.36□□□□□ -0.91
VPS13A-202ENST00000357409 HSPA5P11021 654 aaKnown RBP9.36□□□□□ -0.91
VPS13A-202ENST00000357409 KRI1Q8N9T8 703 aaKnown RBP9.35□□□□□ -0.91
VPS13A-202ENST00000357409 AIMP1Q12904 312 aaKnown RBP9.35□□□□□ -0.91
VPS13A-202ENST00000357409 C11orf95C9JLR9 678 aaPredicted RBP9.34□□□□□ -0.91
VPS13A-202ENST00000357409 EIF4G1Q04637 1599 aaKnown RBP9.34□□□□□ -0.91
VPS13A-202ENST00000357409 HDGFL2Q7Z4V5 671 aaPredicted RBP9.34□□□□□ -0.91
VPS13A-202ENST00000357409 L1TD1Q5T7N2 865 aaKnown RBP9.34□□□□□ -0.91
VPS13A-202ENST00000357409 DDRGK1Q96HY6 314 aa9.33□□□□□ -0.92
VPS13A-202ENST00000357409 CNKSR2Q8WXI2 1034 aa9.31□□□□□ -0.92
VPS13A-202ENST00000357409 SMC4Q9NTJ3 1288 aa9.31□□□□□ -0.92
VPS13A-202ENST00000357409 KANK4Q5T7N3 995 aaPredicted RBP9.31□□□□□ -0.92
VPS13A-202ENST00000357409 NOC3LQ8WTT2 800 aaKnown RBP9.31□□□□□ -0.92
VPS13A-202ENST00000357409 PNNQ9H307 717 aaKnown RBP9.31□□□□□ -0.92
VPS13A-202ENST00000357409 MINK1Q8N4C8 1332 aaPredicted RBP9.31□□□□□ -0.92
VPS13A-202ENST00000357409 PATL2C9JE40 543 aaKnown RBP9.31□□□□□ -0.92
VPS13A-202ENST00000357409 CDCA8Q53HL2 280 aa9.31□□□□□ -0.92
VPS13A-202ENST00000357409 WASHC2CQ9Y4E1 1318 aa9.3□□□□□ -0.92
VPS13A-202ENST00000357409 HDGFP51858 240 aaKnown RBP9.3□□□□□ -0.92
VPS13A-202ENST00000357409 KIAA1211Q6ZU35 1233 aa9.3□□□□□ -0.92
VPS13A-202ENST00000357409 DHX16O60231 1041 aaKnown RBP9.29□□□□□ -0.92
VPS13A-202ENST00000357409 HSCBQ8IWL3 235 aa9.29□□□□□ -0.92
VPS13A-202ENST00000357409 CWC22Q9HCG8 908 aaKnown RBP9.29□□□□□ -0.92
VPS13A-202ENST00000357409 STRN4Q9NRL3 753 aa9.29□□□□□ -0.92
VPS13A-202ENST00000357409 EID1Q9Y6B2 187 aa9.28□□□□□ -0.92
VPS13A-202ENST00000357409 APPP05067 770 aa9.28□□□□□ -0.92
VPS13A-202ENST00000357409 HMOX1P09601 288 aa9.28□□□□□ -0.92
VPS13A-202ENST00000357409 GLIPR1L2Q4G1C9 344 aa9.27□□□□□ -0.92
VPS13A-202ENST00000357409 PMFBP1Q8TBY8 1022 aa9.27□□□□□ -0.92
VPS13A-202ENST00000357409 PSME1Q06323 249 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 103.9 ms