RNA–Protein interactions for RNA: ENST00000354822.6

NKX2-1-201, Transcript of NK2 homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene NKX2-1, Length 2,191 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1-201ENST00000354822 PRG4Q92954 1404 aaPredicted RBP31.62■■■□□ 2.65
NKX2-1-201ENST00000354822 DNMT1P26358 1616 aaKnown RBP31.6■■■□□ 2.65
NKX2-1-201ENST00000354822 ABCC5O15440 1437 aa31.58■■■□□ 2.65
NKX2-1-201ENST00000354822 MPHOSPH9Q99550 1183 aa31.56■■■□□ 2.64
NKX2-1-201ENST00000354822 ITSN2Q9NZM3 1697 aa31.55■■■□□ 2.64
NKX2-1-201ENST00000354822 KDM6BO15054 1643 aa31.55■■■□□ 2.64
NKX2-1-201ENST00000354822 DENND4BO75064 1496 aaPredicted RBP31.54■■■□□ 2.64
NKX2-1-201ENST00000354822 SHROOM2Q13796 1616 aa31.54■■■□□ 2.64
NKX2-1-201ENST00000354822 KIF14Q15058 1648 aa31.52■■■□□ 2.64
NKX2-1-201ENST00000354822 KDM5BQ9UGL1 1544 aa31.51■■■□□ 2.64
NKX2-1-201ENST00000354822 PTPRGP23470 1445 aa31.51■■■□□ 2.64
NKX2-1-201ENST00000354822 ATP10BO94823 1461 aa31.51■■■□□ 2.63
NKX2-1-201ENST00000354822 ZNF644Q9H582 1327 aaPredicted RBP31.48■■■□□ 2.63
NKX2-1-201ENST00000354822 CFDP1Q9UEE9 299 aaPredicted RBP31.47■■■□□ 2.63
NKX2-1-201ENST00000354822 GPATCH8Q9UKJ3 1502 aaKnown RBP31.46■■■□□ 2.63
NKX2-1-201ENST00000354822 PLEKHD1A6NEE1 506 aa31.45■■■□□ 2.63
NKX2-1-201ENST00000354822 HIRIP3Q9BW71 556 aaPredicted RBP31.45■■■□□ 2.63
NKX2-1-201ENST00000354822 CAMSAP2Q08AD1 1489 aa31.42■■■□□ 2.62
NKX2-1-201ENST00000354822 CCER2I3L3R5 266 aa31.41■■■□□ 2.62
NKX2-1-201ENST00000354822 ANP32CO43423 234 aa31.4■■■□□ 2.62
NKX2-1-201ENST00000354822 ABCC10Q5T3U5 1492 aa31.37■■■□□ 2.61
NKX2-1-201ENST00000354822 ANKRD30BQ9BXX2 1392 aa31.36■■■□□ 2.61
NKX2-1-201ENST00000354822 CDC42BPAQ5VT25 1732 aa31.35■■■□□ 2.61
NKX2-1-201ENST00000354822 KCNH8Q96L42 1107 aa31.34■■■□□ 2.61
NKX2-1-201ENST00000354822 NCOA1Q15788 1441 aa31.34■■■□□ 2.61
NKX2-1-201ENST00000354822 ADGRL2O95490 1459 aa31.33■■■□□ 2.61
NKX2-1-201ENST00000354822 ADGBQ8N7X0 1667 aa31.32■■■□□ 2.61
NKX2-1-201ENST00000354822 CLASP1Q7Z460 1538 aa31.32■■■□□ 2.6
NKX2-1-201ENST00000354822 RPRD2Q5VT52 1461 aaKnown RBP31.32■■■□□ 2.6
NKX2-1-201ENST00000354822 SLC4A1APQ9BWU0 796 aaKnown RBP31.31■■■□□ 2.6
NKX2-1-201ENST00000354822 L3MBTL2Q969R5 705 aa31.3■■■□□ 2.6
NKX2-1-201ENST00000354822 CROCC2H7BZ55 1655 aa31.29■■■□□ 2.6
NKX2-1-201ENST00000354822 ERCC6L2Q5T890 1561 aa31.29■■■□□ 2.6
NKX2-1-201ENST00000354822 EIF4G2P78344 907 aaKnown RBP eCLIP31.27■■■□□ 2.6
NKX2-1-201ENST00000354822 ZNF777Q9ULD5 760 aaPredicted RBP31.27■■■□□ 2.6
NKX2-1-201ENST00000354822 ANKRD30AQ9BXX3 1397 aa31.27■■■□□ 2.6
NKX2-1-201ENST00000354822 FOXD1Q16676 465 aa31.26■■■□□ 2.6
NKX2-1-201ENST00000354822 HSPA5P11021 654 aaKnown RBP31.23■■■□□ 2.59
NKX2-1-201ENST00000354822 ABCC2Q92887 1545 aa31.22■■■□□ 2.59
NKX2-1-201ENST00000354822 PZPP20742 1482 aa31.2■■■□□ 2.58
NKX2-1-201ENST00000354822 SHANK2Q9UPX8 1470 aa31.19■■■□□ 2.58
NKX2-1-201ENST00000354822 TEX14Q8IWB6 1497 aa31.17■■■□□ 2.58
NKX2-1-201ENST00000354822 PREX2Q70Z35 1606 aa31.13■■■□□ 2.57
NKX2-1-201ENST00000354822 ANKRD50Q9ULJ7 1429 aa31.13■■■□□ 2.57
NKX2-1-201ENST00000354822 SUPT16HQ9Y5B9 1047 aaKnown RBP31.13■■■□□ 2.57
NKX2-1-201ENST00000354822 WASHC2AQ641Q2 1341 aa31.13■■■□□ 2.57
NKX2-1-201ENST00000354822 KIAA1107Q9UPP5 1409 aa31.12■■■□□ 2.57
NKX2-1-201ENST00000354822 TSPY4P0CV99 314 aa31.1■■■□□ 2.57
NKX2-1-201ENST00000354822 TSPY10P0CW01 314 aa31.1■■■□□ 2.57
NKX2-1-201ENST00000354822 CDC42BPBQ9Y5S2 1711 aa31.1■■■□□ 2.57
NKX2-1-201ENST00000354822 ARHGEF5Q12774 1597 aa31.09■■■□□ 2.57
NKX2-1-201ENST00000354822 C9orf84Q5VXU9 1444 aa31.09■■■□□ 2.57
NKX2-1-201ENST00000354822 UHRF1BP1LA0JNW5 1464 aa31.08■■■□□ 2.57
NKX2-1-201ENST00000354822 NBPF8Q3BBV2 869 aa31.06■■■□□ 2.56
NKX2-1-201ENST00000354822 RSPH4AQ5TD94 716 aa31.04■■■□□ 2.56
NKX2-1-201ENST00000354822 SAMD9LQ8IVG5 1584 aa31.04■■■□□ 2.56
NKX2-1-201ENST00000354822 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP31.02■■■□□ 2.56
NKX2-1-201ENST00000354822 PKD2Q13563 968 aa31.02■■■□□ 2.56
NKX2-1-201ENST00000354822 TTC37Q6PGP7 1564 aa31.02■■■□□ 2.56
NKX2-1-201ENST00000354822 ZCCHC11Q5TAX3 1644 aaKnown RBP31.01■■■□□ 2.56
NKX2-1-201ENST00000354822 MBD5Q9P267 1494 aa31.01■■■□□ 2.55
NKX2-1-201ENST00000354822 CNTLNQ9NXG0 1405 aa30.98■■■□□ 2.55
NKX2-1-201ENST00000354822 CCDC7Q96M83 1385 aa30.98■■■□□ 2.55
NKX2-1-201ENST00000354822 SPATA31E1Q6ZUB1 1445 aa30.98■■■□□ 2.55
NKX2-1-201ENST00000354822 MYO5CQ9NQX4 1742 aa30.97■■■□□ 2.55
NKX2-1-201ENST00000354822 KDM5DQ9BY66 1539 aa30.97■■■□□ 2.55
NKX2-1-201ENST00000354822 NUP155O75694 1391 aa30.97■■■□□ 2.55
NKX2-1-201ENST00000354822 HNRNPMP52272 730 aaKnown RBP eCLIP30.96■■■□□ 2.55
NKX2-1-201ENST00000354822 CCDC141Q6ZP82 1450 aa30.96■■■□□ 2.55
NKX2-1-201ENST00000354822 ARHGAP5Q13017 1502 aa30.94■■■□□ 2.54
NKX2-1-201ENST00000354822 KIF15Q9NS87 1388 aa30.93■■■□□ 2.54
NKX2-1-201ENST00000354822 C11orf95C9JLR9 678 aaPredicted RBP30.89■■■□□ 2.54
NKX2-1-201ENST00000354822 PLEKHH2Q8IVE3 1493 aa30.87■■■□□ 2.53
NKX2-1-201ENST00000354822 SYCP2Q9BX26 1530 aa30.87■■■□□ 2.53
NKX2-1-201ENST00000354822 POLR1AO95602 1720 aaPredicted RBP30.87■■■□□ 2.53
NKX2-1-201ENST00000354822 MAST1Q9Y2H9 1570 aa30.86■■■□□ 2.53
NKX2-1-201ENST00000354822 UHRF1BP1Q6BDS2 1440 aa30.83■■■□□ 2.53
NKX2-1-201ENST00000354822 KIF7Q2M1P5 1343 aa30.82■■■□□ 2.52
NKX2-1-201ENST00000354822 PLCH2O75038 1416 aa30.81■■■□□ 2.52
NKX2-1-201ENST00000354822 ARHGEF12Q9NZN5 1544 aa30.81■■■□□ 2.52
NKX2-1-201ENST00000354822 PRKRIP1Q9H875 184 aaPredicted RBP30.78■■■□□ 2.52
NKX2-1-201ENST00000354822 ARID4BQ4LE39 1312 aaPredicted RBP30.77■■■□□ 2.52
NKX2-1-201ENST00000354822 NEFLP07196 543 aa30.76■■■□□ 2.51
NKX2-1-201ENST00000354822 USP47Q96K76 1375 aa30.75■■■□□ 2.51
NKX2-1-201ENST00000354822 FKBP8Q14318 412 aa30.73■■■□□ 2.51
NKX2-1-201ENST00000354822 PLXNC1O60486 1568 aa30.73■■■□□ 2.51
NKX2-1-201ENST00000354822 EFCAB2Q5VUJ9 269 aa30.72■■■□□ 2.51
NKX2-1-201ENST00000354822 RALGAPBQ86X10 1494 aa30.72■■■□□ 2.51
NKX2-1-201ENST00000354822 HNRNPUQ00839 825 aaKnown RBP eCLIP30.71■■■□□ 2.51
NKX2-1-201ENST00000354822 ZNF326Q5BKZ1 582 aaKnown RBP30.71■■■□□ 2.51
NKX2-1-201ENST00000354822 FAM135AQ9P2D6 1515 aa30.71■■■□□ 2.51
NKX2-1-201ENST00000354822 ARAP3Q8WWN8 1544 aa30.7■■■□□ 2.51
NKX2-1-201ENST00000354822 ABCC1P33527 1531 aa30.68■■■□□ 2.5
NKX2-1-201ENST00000354822 KDM5CP41229 1560 aa30.68■■■□□ 2.5
NKX2-1-201ENST00000354822 WDR7Q9Y4E6 1490 aa30.68■■■□□ 2.5
NKX2-1-201ENST00000354822 OSCARQ8IYS5 282 aa30.67■■■□□ 2.5
NKX2-1-201ENST00000354822 UNC13BO14795 1591 aa30.64■■■□□ 2.5
NKX2-1-201ENST00000354822 CARD11Q9BXL7 1154 aa30.62■■■□□ 2.49
NKX2-1-201ENST00000354822 ROCK2O75116 1388 aaKnown RBP30.61■■■□□ 2.49
NKX2-1-201ENST00000354822 DUOX2Q9NRD8 1548 aa30.61■■■□□ 2.49
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms