RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 KAT6BQ8WYB5 2073 aa7.72□□□□□ -1.17
CSMD1-201ENST00000335551 CLIP1P30622 1438 aa7.72□□□□□ -1.17
CSMD1-201ENST00000335551 HMMRO75330 724 aa7.72□□□□□ -1.17
CSMD1-201ENST00000335551 TAOK2Q9UL54 1235 aa7.72□□□□□ -1.17
CSMD1-201ENST00000335551 A0A0G2JS52 829 aa7.71□□□□□ -1.17
CSMD1-201ENST00000335551 RSF1Q96T23 1441 aaPredicted RBP7.71□□□□□ -1.18
CSMD1-201ENST00000335551 CCER2I3L3R5 266 aa7.71□□□□□ -1.18
CSMD1-201ENST00000335551 SKOR2Q2VWA4 1001 aaPredicted RBP7.71□□□□□ -1.18
CSMD1-201ENST00000335551 CCDC66A2RUB6 948 aa7.71□□□□□ -1.18
CSMD1-201ENST00000335551 PRM3Q9NNZ6 103 aa7.71□□□□□ -1.18
CSMD1-201ENST00000335551 GRWD1Q9BQ67 446 aaKnown RBP eCLIP7.7□□□□□ -1.18
CSMD1-201ENST00000335551 NCBP3Q53F19 620 aaKnown RBP7.7□□□□□ -1.18
CSMD1-201ENST00000335551 ACBD3Q9H3P7 528 aa7.7□□□□□ -1.18
CSMD1-201ENST00000335551 CCDC191Q8NCU4 936 aa7.7□□□□□ -1.18
CSMD1-201ENST00000335551 CEP89Q96ST8 783 aa7.7□□□□□ -1.18
CSMD1-201ENST00000335551 AK7Q96M32 723 aa7.7□□□□□ -1.18
CSMD1-201ENST00000335551 IPO8O15397 1037 aaKnown RBP7.7□□□□□ -1.18
CSMD1-201ENST00000335551 TPM1P09493 284 aa7.7□□□□□ -1.18
CSMD1-201ENST00000335551 GPATCH3Q96I76 525 aa7.7□□□□□ -1.18
CSMD1-201ENST00000335551 HSP90B1P14625 803 aaKnown RBP7.69□□□□□ -1.18
CSMD1-201ENST00000335551 TSPY4P0CV99 314 aa7.69□□□□□ -1.18
CSMD1-201ENST00000335551 TSPY10P0CW01 314 aa7.69□□□□□ -1.18
CSMD1-201ENST00000335551 PATL2C9JE40 543 aaKnown RBP7.69□□□□□ -1.18
CSMD1-201ENST00000335551 TSR1Q2NL82 804 aaKnown RBP7.69□□□□□ -1.18
CSMD1-201ENST00000335551 ARGLU1Q9NWB6 273 aaPredicted RBP7.69□□□□□ -1.18
CSMD1-201ENST00000335551 CDR1P51861 262 aa7.69□□□□□ -1.18
CSMD1-201ENST00000335551 ZCCHC6Q5VYS8 1495 aaKnown RBP7.68□□□□□ -1.18
CSMD1-201ENST00000335551 RDXP35241 583 aaKnown RBP7.68□□□□□ -1.18
CSMD1-201ENST00000335551 GSE1Q14687 1217 aa7.68□□□□□ -1.18
CSMD1-201ENST00000335551 RWDD1Q9H446 243 aaPredicted RBP7.68□□□□□ -1.18
CSMD1-201ENST00000335551 DCTN1Q14203 1278 aa7.68□□□□□ -1.18
CSMD1-201ENST00000335551 HIRIP3Q9BW71 556 aaPredicted RBP7.68□□□□□ -1.18
CSMD1-201ENST00000335551 ST18O60284 1047 aa7.68□□□□□ -1.18
CSMD1-201ENST00000335551 C14orf37Q86TY3 774 aa7.68□□□□□ -1.18
CSMD1-201ENST00000335551 CHIC2Q9UKJ5 165 aa7.68□□□□□ -1.18
CSMD1-201ENST00000335551 AEBP2Q6ZN18 517 aaPredicted RBP7.67□□□□□ -1.18
CSMD1-201ENST00000335551 PODXL2Q9NZ53 605 aa7.67□□□□□ -1.18
CSMD1-201ENST00000335551 ATP6V1DQ9Y5K8 247 aa7.67□□□□□ -1.18
CSMD1-201ENST00000335551 EEA1Q15075 1411 aa7.67□□□□□ -1.18
CSMD1-201ENST00000335551 KIF3AQ9Y496 699 aa7.67□□□□□ -1.18
CSMD1-201ENST00000335551 CCAR2Q8N163 923 aaKnown RBP7.67□□□□□ -1.18
CSMD1-201ENST00000335551 CHMP7Q8WUX9 453 aaPredicted RBP7.67□□□□□ -1.18
CSMD1-201ENST00000335551 TAF3Q5VWG9 929 aa7.66□□□□□ -1.18
CSMD1-201ENST00000335551 STK11IPQ8N1F8 1099 aa7.66□□□□□ -1.18
CSMD1-201ENST00000335551 NACADO15069 1562 aa7.66□□□□□ -1.18
CSMD1-201ENST00000335551 FAM13BQ9NYF5 915 aa7.66□□□□□ -1.18
CSMD1-201ENST00000335551 PPP1R15AO75807 674 aaPredicted RBP7.66□□□□□ -1.18
CSMD1-201ENST00000335551 GOLGA6L19H0YKK7 550 aa7.66□□□□□ -1.18
CSMD1-201ENST00000335551 NPHP1O15259 732 aa7.66□□□□□ -1.18
CSMD1-201ENST00000335551 GOLGA3Q08378 1498 aa7.66□□□□□ -1.18
CSMD1-201ENST00000335551 RUFY1Q96T51 708 aa7.65□□□□□ -1.18
CSMD1-201ENST00000335551 HSP90B2PQ58FF3 399 aa7.65□□□□□ -1.18
CSMD1-201ENST00000335551 TPM2P07951 284 aa7.65□□□□□ -1.19
CSMD1-201ENST00000335551 PMFBP1Q8TBY8 1022 aa7.64□□□□□ -1.19
CSMD1-201ENST00000335551 CHMP4CQ96CF2 233 aa7.64□□□□□ -1.19
CSMD1-201ENST00000335551 NEUROD2Q15784 382 aa7.64□□□□□ -1.19
CSMD1-201ENST00000335551 FAM43AQ8N2R8 423 aa7.64□□□□□ -1.19
CSMD1-201ENST00000335551 IPO7O95373 1038 aaKnown RBP7.64□□□□□ -1.19
CSMD1-201ENST00000335551 PLPPR3Q6T4P5 718 aa7.64□□□□□ -1.19
CSMD1-201ENST00000335551 KTN1Q86UP2 1357 aaKnown RBP7.64□□□□□ -1.19
CSMD1-201ENST00000335551 CARD11Q9BXL7 1154 aa7.64□□□□□ -1.19
CSMD1-201ENST00000335551 RASSF8Q8NHQ8 419 aa7.63□□□□□ -1.19
CSMD1-201ENST00000335551 H0YHG0 523 aa7.63□□□□□ -1.19
CSMD1-201ENST00000335551 RCAN3Q9UKA8 241 aa7.63□□□□□ -1.19
CSMD1-201ENST00000335551 TSHZ2Q9NRE2 1034 aa7.63□□□□□ -1.19
CSMD1-201ENST00000335551 CEP162Q5TB80 1403 aa7.62□□□□□ -1.19
CSMD1-201ENST00000335551 ISY1Q9ULR0 285 aaKnown RBP7.62□□□□□ -1.19
CSMD1-201ENST00000335551 TIMELESSQ9UNS1 1208 aa7.62□□□□□ -1.19
CSMD1-201ENST00000335551 BECN2A8MW95 431 aa7.62□□□□□ -1.19
CSMD1-201ENST00000335551 CHMP4AQ9BY43 222 aa7.61□□□□□ -1.19
CSMD1-201ENST00000335551 PDE4CQ08493 712 aa7.61□□□□□ -1.19
CSMD1-201ENST00000335551 MFAP1P55081 439 aaKnown RBP7.61□□□□□ -1.19
CSMD1-201ENST00000335551 TPD52L1Q16890 204 aaPredicted RBP7.61□□□□□ -1.19
CSMD1-201ENST00000335551 PHLDB1Q86UU1 1377 aa7.61□□□□□ -1.19
CSMD1-201ENST00000335551 ANKRD20A12PQ8NF67 263 aa7.61□□□□□ -1.19
CSMD1-201ENST00000335551 INCENPQ9NQS7 918 aa7.61□□□□□ -1.19
CSMD1-201ENST00000335551 ZNF592Q92610 1267 aa7.61□□□□□ -1.19
CSMD1-201ENST00000335551 FANCIQ9NVI1 1328 aa7.61□□□□□ -1.19
CSMD1-201ENST00000335551 TAF7LQ5H9L4 462 aa7.6□□□□□ -1.19
CSMD1-201ENST00000335551 ITPRIPQ8IWB1 547 aa7.6□□□□□ -1.19
CSMD1-201ENST00000335551 DIAPH3Q9NSV4 1193 aa7.6□□□□□ -1.19
CSMD1-201ENST00000335551 ERCC4Q92889 916 aaPredicted RBP7.6□□□□□ -1.19
CSMD1-201ENST00000335551 HDAC5Q9UQL6 1122 aa7.6□□□□□ -1.19
CSMD1-201ENST00000335551 CREBRFQ8IUR6 639 aa7.6□□□□□ -1.19
CSMD1-201ENST00000335551 HMGN5P82970 282 aaKnown RBP7.6□□□□□ -1.19
CSMD1-201ENST00000335551 HOOK1Q9UJC3 728 aaKnown RBP7.59□□□□□ -1.19
CSMD1-201ENST00000335551 ZRSR2Q15696 482 aaKnown RBP7.59□□□□□ -1.19
CSMD1-201ENST00000335551 LEKR1Q6ZMV7 388 aa7.59□□□□□ -1.19
CSMD1-201ENST00000335551 HOMER1Q86YM7 354 aa7.59□□□□□ -1.19
CSMD1-201ENST00000335551 MYO6Q9UM54 1294 aa7.59□□□□□ -1.19
CSMD1-201ENST00000335551 USP8P40818 1118 aa7.59□□□□□ -1.19
CSMD1-201ENST00000335551 MNS1Q8NEH6 495 aa7.59□□□□□ -1.19
CSMD1-201ENST00000335551 RRP7BPQ9NSQ0 103 aa7.59□□□□□ -1.19
CSMD1-201ENST00000335551 SF3A1Q15459 793 aaKnown RBP7.58□□□□□ -1.2
CSMD1-201ENST00000335551 DDX49Q9Y6V7 483 aaKnown RBP7.58□□□□□ -1.2
CSMD1-201ENST00000335551 CCDC39Q9UFE4 941 aa7.58□□□□□ -1.2
CSMD1-201ENST00000335551 U2SURPO15042 1029 aaKnown RBP7.58□□□□□ -1.2
CSMD1-201ENST00000335551 CC2D1BQ5T0F9 858 aaKnown RBP7.58□□□□□ -1.2
CSMD1-201ENST00000335551 TMF1P82094 1093 aa7.58□□□□□ -1.2
CSMD1-201ENST00000335551 H3BQV1 296 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms