RNA–Protein interactions for RNA: ENST00000273179.9

CTDSPL-201, Transcript of CTD small phosphatase like, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CTDSPL, Length 4,459 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDSPL-201ENST00000273179 ZNF428Q96B54 188 aa11.65□□□□□ -0.54
CTDSPL-201ENST00000273179 TOP2AP11388 1531 aaKnown RBP11.65□□□□□ -0.54
CTDSPL-201ENST00000273179 NPM1P06748 294 aaKnown RBP eCLIP11.65□□□□□ -0.54
CTDSPL-201ENST00000273179 NOP58Q9Y2X3 529 aaKnown RBP11.65□□□□□ -0.54
CTDSPL-201ENST00000273179 VGLL3A8MV65 326 aa11.64□□□□□ -0.55
CTDSPL-201ENST00000273179 E9PSI1 815 aa11.64□□□□□ -0.55
CTDSPL-201ENST00000273179 FAM43BQ6ZT52 329 aaPredicted RBP11.64□□□□□ -0.55
CTDSPL-201ENST00000273179 KDM4AO75164 1064 aa11.64□□□□□ -0.55
CTDSPL-201ENST00000273179 FOXD4L5Q5VV16 416 aaPredicted RBP11.64□□□□□ -0.55
CTDSPL-201ENST00000273179 FOXD4L4Q8WXT5 416 aaPredicted RBP11.64□□□□□ -0.55
CTDSPL-201ENST00000273179 SMARCA2P51531 1590 aa11.63□□□□□ -0.55
CTDSPL-201ENST00000273179 ZBTB47Q9UFB7 747 aaPredicted RBP11.62□□□□□ -0.55
CTDSPL-201ENST00000273179 DNAJC2Q99543 621 aaKnown RBP11.61□□□□□ -0.55
CTDSPL-201ENST00000273179 GTF2E1P29083 439 aaPredicted RBP11.6□□□□□ -0.55
CTDSPL-201ENST00000273179 SOGA1O94964 1423 aa11.6□□□□□ -0.55
CTDSPL-201ENST00000273179 STAC3Q96MF2 364 aa11.59□□□□□ -0.55
CTDSPL-201ENST00000273179 PHF14O94880 888 aa11.58□□□□□ -0.55
CTDSPL-201ENST00000273179 CCDC27Q2M243 656 aa11.58□□□□□ -0.56
CTDSPL-201ENST00000273179 RUSC2Q8N2Y8 1516 aa11.57□□□□□ -0.56
CTDSPL-201ENST00000273179 PRDM16Q9HAZ2 1276 aa11.57□□□□□ -0.56
CTDSPL-201ENST00000273179 CALD1Q05682 793 aaKnown RBP11.56□□□□□ -0.56
CTDSPL-201ENST00000273179 TAF3Q5VWG9 929 aa11.55□□□□□ -0.56
CTDSPL-201ENST00000273179 ATAD2BQ9ULI0 1458 aa11.55□□□□□ -0.56
CTDSPL-201ENST00000273179 EIF4G1Q04637 1599 aaKnown RBP11.54□□□□□ -0.56
CTDSPL-201ENST00000273179 TNNT3P45378 269 aaPredicted RBP11.54□□□□□ -0.56
CTDSPL-201ENST00000273179 ARID4AP29374 1257 aaPredicted RBP11.54□□□□□ -0.56
CTDSPL-201ENST00000273179 BAZ1BQ9UIG0 1483 aaKnown RBP11.53□□□□□ -0.56
CTDSPL-201ENST00000273179 ARID3CA6NKF2 412 aa11.52□□□□□ -0.56
CTDSPL-201ENST00000273179 FANCIQ9NVI1 1328 aa11.52□□□□□ -0.57
CTDSPL-201ENST00000273179 FAM177A1Q8N128 213 aaPredicted RBP11.52□□□□□ -0.57
CTDSPL-201ENST00000273179 SSR1P43307 286 aaKnown RBP11.51□□□□□ -0.57
CTDSPL-201ENST00000273179 FOXD4L6Q3SYB3 417 aaPredicted RBP11.51□□□□□ -0.57
CTDSPL-201ENST00000273179 FOXD4L3Q6VB84 417 aaPredicted RBP11.51□□□□□ -0.57
CTDSPL-201ENST00000273179 NOL8Q76FK4 1167 aaKnown RBP11.51□□□□□ -0.57
CTDSPL-201ENST00000273179 ZHX1Q9UKY1 873 aaPredicted RBP11.51□□□□□ -0.57
CTDSPL-201ENST00000273179 PLEKHD1A6NEE1 506 aa11.5□□□□□ -0.57
CTDSPL-201ENST00000273179 ZBTB12Q9Y330 459 aaPredicted RBP11.5□□□□□ -0.57
CTDSPL-201ENST00000273179 CALRP27797 417 aaKnown RBP11.49□□□□□ -0.57
CTDSPL-201ENST00000273179 FAM43AQ8N2R8 423 aa11.49□□□□□ -0.57
CTDSPL-201ENST00000273179 KCNG1Q9UIX4 513 aa11.49□□□□□ -0.57
CTDSPL-201ENST00000273179 RNF216Q9NWF9 866 aaPredicted RBP11.48□□□□□ -0.57
CTDSPL-201ENST00000273179 MYCNP04198 464 aaPredicted RBP11.48□□□□□ -0.57
CTDSPL-201ENST00000273179 MTMR7Q9Y216 660 aa11.47□□□□□ -0.57
CTDSPL-201ENST00000273179 P3H3Q8IVL6 736 aa11.47□□□□□ -0.57
CTDSPL-201ENST00000273179 ITGAEP38570 1179 aa11.47□□□□□ -0.57
CTDSPL-201ENST00000273179 GRIPAP1Q4V328 841 aa11.46□□□□□ -0.57
CTDSPL-201ENST00000273179 ANP32CO43423 234 aa11.46□□□□□ -0.57
CTDSPL-201ENST00000273179 WRNQ14191 1432 aaPredicted RBP eCLIP11.46□□□□□ -0.58
CTDSPL-201ENST00000273179 CASC1Q6TDU7 716 aa11.45□□□□□ -0.58
CTDSPL-201ENST00000273179 HSP90AB4PQ58FF6 505 aa11.45□□□□□ -0.58
CTDSPL-201ENST00000273179 ARMCX6Q7L4S7 300 aa11.44□□□□□ -0.58
CTDSPL-201ENST00000273179 MSH5O43196 834 aa11.43□□□□□ -0.58
CTDSPL-201ENST00000273179 EEA1Q15075 1411 aa11.43□□□□□ -0.58
CTDSPL-201ENST00000273179 TMX4Q9H1E5 349 aaPredicted RBP11.42□□□□□ -0.58
CTDSPL-201ENST00000273179 PDCL3Q9H2J4 239 aa11.42□□□□□ -0.58
CTDSPL-201ENST00000273179 NECTIN2Q92692 538 aa11.41□□□□□ -0.58
CTDSPL-201ENST00000273179 GOLIM4O00461 696 aa11.41□□□□□ -0.58
CTDSPL-201ENST00000273179 RGS22Q8NE09 1264 aa11.41□□□□□ -0.58
CTDSPL-201ENST00000273179 ZNF692Q9BU19 519 aaPredicted RBP11.41□□□□□ -0.58
CTDSPL-201ENST00000273179 PPP1R1BQ9UD71 204 aaPredicted RBP11.4□□□□□ -0.58
CTDSPL-201ENST00000273179 CC2D2BQ6DHV5 1058 aa11.4□□□□□ -0.58
CTDSPL-201ENST00000273179 SYNJ1O43426 1573 aa11.4□□□□□ -0.59
CTDSPL-201ENST00000273179 TMCO4Q5TGY1 634 aa11.39□□□□□ -0.59
CTDSPL-201ENST00000273179 MPNDQ8N594 471 aa11.39□□□□□ -0.59
CTDSPL-201ENST00000273179 ZNF830Q96NB3 372 aaPredicted RBP11.39□□□□□ -0.59
CTDSPL-201ENST00000273179 PEG3Q9GZU2 1588 aa11.39□□□□□ -0.59
CTDSPL-201ENST00000273179 POLD1P28340 1107 aa11.38□□□□□ -0.59
CTDSPL-201ENST00000273179 BANK1Q8NDB2 785 aa11.38□□□□□ -0.59
CTDSPL-201ENST00000273179 PHF23Q9BUL5 403 aaPredicted RBP11.38□□□□□ -0.59
CTDSPL-201ENST00000273179 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.38□□□□□ -0.59
CTDSPL-201ENST00000273179 LMOD2Q6P5Q4 547 aa11.37□□□□□ -0.59
CTDSPL-201ENST00000273179 MAP7D2Q96T17 732 aa11.37□□□□□ -0.59
CTDSPL-201ENST00000273179 CEP162Q5TB80 1403 aa11.36□□□□□ -0.59
CTDSPL-201ENST00000273179 APBB1O00213 710 aa11.36□□□□□ -0.59
CTDSPL-201ENST00000273179 RALBP1Q15311 655 aa11.36□□□□□ -0.59
CTDSPL-201ENST00000273179 LMOD3Q0VAK6 560 aa11.35□□□□□ -0.59
CTDSPL-201ENST00000273179 NEUROD2Q15784 382 aa11.35□□□□□ -0.59
CTDSPL-201ENST00000273179 ATP1B4Q9UN42 357 aaPredicted RBP11.35□□□□□ -0.59
CTDSPL-201ENST00000273179 MRVI1Q9Y6F6 885 aa11.35□□□□□ -0.59
CTDSPL-201ENST00000273179 CHRM1P11229 460 aaPredicted RBP11.34□□□□□ -0.59
CTDSPL-201ENST00000273179 HSP90AB3PQ58FF7 597 aa11.34□□□□□ -0.59
CTDSPL-201ENST00000273179 RBM26Q5T8P6 1007 aaKnown RBP11.34□□□□□ -0.59
CTDSPL-201ENST00000273179 DNAJC5BQ9UF47 199 aa11.34□□□□□ -0.59
CTDSPL-201ENST00000273179 HNRNPUL2Q1KMD3 747 aaKnown RBP11.33□□□□□ -0.6
CTDSPL-201ENST00000273179 PIK3R5Q8WYR1 880 aa11.33□□□□□ -0.6
CTDSPL-201ENST00000273179 PAIP2Q9BPZ3 127 aaKnown RBP11.32□□□□□ -0.6
CTDSPL-201ENST00000273179 GSE1Q14687 1217 aa11.3□□□□□ -0.6
CTDSPL-201ENST00000273179 PPP4R3BQ5MIZ7 849 aa11.3□□□□□ -0.6
CTDSPL-201ENST00000273179 MAFGO15525 162 aa11.29□□□□□ -0.6
CTDSPL-201ENST00000273179 TPM2P07951 284 aa11.29□□□□□ -0.6
CTDSPL-201ENST00000273179 MPHOSPH10O00566 681 aaKnown RBP11.29□□□□□ -0.6
CTDSPL-201ENST00000273179 CDCA8Q53HL2 280 aa11.28□□□□□ -0.6
CTDSPL-201ENST00000273179 GORABQ5T7V8 394 aa11.28□□□□□ -0.6
CTDSPL-201ENST00000273179 NCAPD3P42695 1498 aa11.28□□□□□ -0.6
CTDSPL-201ENST00000273179 TCERG1O14776 1098 aaKnown RBP11.28□□□□□ -0.6
CTDSPL-201ENST00000273179 CREBRFQ8IUR6 639 aa11.28□□□□□ -0.6
CTDSPL-201ENST00000273179 ZNF513Q8N8E2 541 aaPredicted RBP11.28□□□□□ -0.6
CTDSPL-201ENST00000273179 CCDC97Q96F63 343 aaPredicted RBP11.28□□□□□ -0.6
CTDSPL-201ENST00000273179 RAPGEF2Q9Y4G8 1499 aa11.27□□□□□ -0.6
CTDSPL-201ENST00000273179 TNIKQ9UKE5 1360 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms