RNA–Protein interactions for RNA: ENST00000228251.8

YBX3-201, Transcript of Y-box binding protein 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene YBX3, Length 1,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-201ENST00000228251 MIER1Q8N108 512 aa27.75■■■□□ 2.03
YBX3-201ENST00000228251 RRP7BPQ9NSQ0 103 aa27.75■■■□□ 2.03
YBX3-201ENST00000228251 ADGBQ8N7X0 1667 aa27.73■■■□□ 2.03
YBX3-201ENST00000228251 CHIC2Q9UKJ5 165 aa27.73■■■□□ 2.03
YBX3-201ENST00000228251 ZNF644Q9H582 1327 aaPredicted RBP27.72■■■□□ 2.03
YBX3-201ENST00000228251 NEUROD1Q13562 356 aa27.71■■■□□ 2.03
YBX3-201ENST00000228251 KDM5BQ9UGL1 1544 aa27.7■■■□□ 2.03
YBX3-201ENST00000228251 PTPRGP23470 1445 aa27.69■■■□□ 2.02
YBX3-201ENST00000228251 PPP1R15AO75807 674 aaPredicted RBP27.68■■■□□ 2.02
YBX3-201ENST00000228251 ADGRL2O95490 1459 aa27.66■■■□□ 2.02
YBX3-201ENST00000228251 CLASP1Q7Z460 1538 aa27.64■■■□□ 2.02
YBX3-201ENST00000228251 ACIN1Q9UKV3 1341 aaKnown RBP27.63■■■□□ 2.01
YBX3-201ENST00000228251 ERCC6L2Q5T890 1561 aa27.61■■■□□ 2.01
YBX3-201ENST00000228251 CFDP1Q9UEE9 299 aaPredicted RBP27.61■■■□□ 2.01
YBX3-201ENST00000228251 PLEKHD1A6NEE1 506 aa27.59■■■□□ 2.01
YBX3-201ENST00000228251 TONSLQ96HA7 1378 aa27.58■■■□□ 2.01
YBX3-201ENST00000228251 NCOA1Q15788 1441 aa27.58■■■□□ 2.01
YBX3-201ENST00000228251 SHANK2Q9UPX8 1470 aa27.56■■■□□ 2
YBX3-201ENST00000228251 PREX2Q70Z35 1606 aa27.54■■■□□ 2
YBX3-201ENST00000228251 SCAF1Q9H7N4 1312 aaKnown RBP27.54■■■□□ 2
YBX3-201ENST00000228251 ABCC2Q92887 1545 aa27.54■■■□□ 2
YBX3-201ENST00000228251 CDC42BPBQ9Y5S2 1711 aa27.53■■■□□ 2
YBX3-201ENST00000228251 MPHOSPH9Q99550 1183 aa27.53■■■□□ 2
YBX3-201ENST00000228251 ARHGEF5Q12774 1597 aa27.52■■■□□ 2
YBX3-201ENST00000228251 CENPBP07199 599 aaPredicted RBP27.51■■□□□ 1.99
YBX3-201ENST00000228251 TRIM52Q96A61 297 aa27.48■■□□□ 1.99
YBX3-201ENST00000228251 PZPP20742 1482 aa27.48■■□□□ 1.99
YBX3-201ENST00000228251 SAMD9LQ8IVG5 1584 aa27.46■■□□□ 1.99
YBX3-201ENST00000228251 ANKRD30BQ9BXX2 1392 aa27.46■■□□□ 1.99
YBX3-201ENST00000228251 MBD5Q9P267 1494 aa27.44■■□□□ 1.98
YBX3-201ENST00000228251 TTC37Q6PGP7 1564 aa27.42■■□□□ 1.98
YBX3-201ENST00000228251 ANKRD30AQ9BXX3 1397 aa27.42■■□□□ 1.98
YBX3-201ENST00000228251 RPRD2Q5VT52 1461 aaKnown RBP27.42■■□□□ 1.98
YBX3-201ENST00000228251 UHRF1BP1LA0JNW5 1464 aa27.41■■□□□ 1.98
YBX3-201ENST00000228251 C9orf84Q5VXU9 1444 aa27.4■■□□□ 1.98
YBX3-201ENST00000228251 ZNF777Q9ULD5 760 aaPredicted RBP27.4■■□□□ 1.98
YBX3-201ENST00000228251 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP27.4■■□□□ 1.98
YBX3-201ENST00000228251 ZCCHC11Q5TAX3 1644 aaKnown RBP27.37■■□□□ 1.97
YBX3-201ENST00000228251 TEX14Q8IWB6 1497 aa27.36■■□□□ 1.97
YBX3-201ENST00000228251 MYO5CQ9NQX4 1742 aa27.36■■□□□ 1.97
YBX3-201ENST00000228251 KDM5DQ9BY66 1539 aa27.36■■□□□ 1.97
YBX3-201ENST00000228251 ANKRD50Q9ULJ7 1429 aa27.35■■□□□ 1.97
YBX3-201ENST00000228251 MAST1Q9Y2H9 1570 aa27.33■■□□□ 1.97
YBX3-201ENST00000228251 CCDC141Q6ZP82 1450 aa27.33■■□□□ 1.97
YBX3-201ENST00000228251 FOXD1Q16676 465 aa27.32■■□□□ 1.96
YBX3-201ENST00000228251 YTHDC1Q96MU7 727 aaKnown RBP27.29■■□□□ 1.96
YBX3-201ENST00000228251 SLC4A1APQ9BWU0 796 aaKnown RBP27.29■■□□□ 1.96
YBX3-201ENST00000228251 KIAA1107Q9UPP5 1409 aa27.28■■□□□ 1.96
YBX3-201ENST00000228251 SYCP2Q9BX26 1530 aa27.26■■□□□ 1.95
YBX3-201ENST00000228251 L3MBTL2Q969R5 705 aa27.25■■□□□ 1.95
YBX3-201ENST00000228251 ARHGAP5Q13017 1502 aa27.24■■□□□ 1.95
YBX3-201ENST00000228251 HNRNPMP52272 730 aaKnown RBP eCLIP27.23■■□□□ 1.954e-7■■■■■ 27.2
YBX3-201ENST00000228251 KIF15Q9NS87 1388 aa27.22■■□□□ 1.95
YBX3-201ENST00000228251 DDX10Q13206 875 aaKnown RBP27.22■■□□□ 1.95
YBX3-201ENST00000228251 RSPH4AQ5TD94 716 aa27.22■■□□□ 1.95
YBX3-201ENST00000228251 HIRIP3Q9BW71 556 aaPredicted RBP27.21■■□□□ 1.95
YBX3-201ENST00000228251 PLXNC1O60486 1568 aa27.21■■□□□ 1.95
YBX3-201ENST00000228251 TSPY4P0CV99 314 aa27.2■■□□□ 1.95
YBX3-201ENST00000228251 TSPY10P0CW01 314 aa27.2■■□□□ 1.95
YBX3-201ENST00000228251 PLEKHH2Q8IVE3 1493 aa27.2■■□□□ 1.95
YBX3-201ENST00000228251 PLCH2O75038 1416 aa27.16■■□□□ 1.94
YBX3-201ENST00000228251 UNC13BO14795 1591 aa27.16■■□□□ 1.94
YBX3-201ENST00000228251 ARHGEF12Q9NZN5 1544 aa27.15■■□□□ 1.94
YBX3-201ENST00000228251 ARAP3Q8WWN8 1544 aa27.14■■□□□ 1.94
YBX3-201ENST00000228251 GTF3C3Q9Y5Q9 886 aa27.13■■□□□ 1.93
YBX3-201ENST00000228251 ABCC1P33527 1531 aa27.12■■□□□ 1.93
YBX3-201ENST00000228251 PKD2Q13563 968 aa27.12■■□□□ 1.93
YBX3-201ENST00000228251 NUP155O75694 1391 aa27.12■■□□□ 1.93
YBX3-201ENST00000228251 NBPF8Q3BBV2 869 aa27.11■■□□□ 1.93
YBX3-201ENST00000228251 POLR1AO95602 1720 aaPredicted RBP27.09■■□□□ 1.93
YBX3-201ENST00000228251 HSPA5P11021 654 aaKnown RBP27.09■■□□□ 1.93
YBX3-201ENST00000228251 FAM135AQ9P2D6 1515 aa27.07■■□□□ 1.92
YBX3-201ENST00000228251 SPATA31E1Q6ZUB1 1445 aa27.06■■□□□ 1.92
YBX3-201ENST00000228251 EIF4G2P78344 907 aaKnown RBP eCLIP27.04■■□□□ 1.92
YBX3-201ENST00000228251 IQGAP3Q86VI3 1631 aa27.04■■□□□ 1.92
YBX3-201ENST00000228251 MAGI2Q86UL8 1455 aa27.03■■□□□ 1.92
YBX3-201ENST00000228251 DUOX2Q9NRD8 1548 aa27.02■■□□□ 1.92
YBX3-201ENST00000228251 WASHC2AQ641Q2 1341 aa27.02■■□□□ 1.92
YBX3-201ENST00000228251 WDR7Q9Y4E6 1490 aa27.02■■□□□ 1.92
YBX3-201ENST00000228251 KCNH8Q96L42 1107 aa27.01■■□□□ 1.91
YBX3-201ENST00000228251 ABCA9Q8IUA7 1624 aa27.01■■□□□ 1.91
YBX3-201ENST00000228251 UHRF1BP1Q6BDS2 1440 aa27.01■■□□□ 1.91
YBX3-201ENST00000228251 CCER2I3L3R5 266 aa26.98■■□□□ 1.91
YBX3-201ENST00000228251 EFCAB2Q5VUJ9 269 aa26.97■■□□□ 1.91
YBX3-201ENST00000228251 ERBINQ96RT1 1412 aa26.96■■□□□ 1.91
YBX3-201ENST00000228251 TRAPPC8Q9Y2L5 1435 aa26.95■■□□□ 1.9
YBX3-201ENST00000228251 ANP32CO43423 234 aa26.92■■□□□ 1.9
YBX3-201ENST00000228251 KDM5CP41229 1560 aa26.91■■□□□ 1.9
YBX3-201ENST00000228251 ZFYVE16Q7Z3T8 1539 aa26.91■■□□□ 1.9
YBX3-201ENST00000228251 RALGAPBQ86X10 1494 aa26.91■■□□□ 1.9
YBX3-201ENST00000228251 CCDC7Q96M83 1385 aa26.91■■□□□ 1.9
YBX3-201ENST00000228251 RTEL1-TNFRSF6BF6WH68 1400 aa26.9■■□□□ 1.9
YBX3-201ENST00000228251 PLA2R1Q13018 1463 aa26.89■■□□□ 1.9
YBX3-201ENST00000228251 C11orf95C9JLR9 678 aaPredicted RBP26.89■■□□□ 1.89
YBX3-201ENST00000228251 CNTLNQ9NXG0 1405 aa26.88■■□□□ 1.89
YBX3-201ENST00000228251 INO80Q9ULG1 1556 aaPredicted RBP26.87■■□□□ 1.89
YBX3-201ENST00000228251 ATP10AO60312 1499 aa26.87■■□□□ 1.89
YBX3-201ENST00000228251 BCORL1Q5H9F3 1711 aa26.85■■□□□ 1.89
YBX3-201ENST00000228251 DEPDC5O75140 1603 aa26.84■■□□□ 1.89
YBX3-201ENST00000228251 ASXL2Q76L83 1435 aa26.83■■□□□ 1.89
Retrieved 100 of 20,778 RNA–protein pairs in 148 ms