RNA–Protein interactions for RNA: YPL072W

UBP16, Transcript of Deubiquitinating enzyme anchored to the outer mitochondrial membrane, yeast

Gene UBP16, Length 1,500 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBP16	YPL072W	MTC4	P38335	694 aa	Known RBP	2.76	□□□□□ -1.97
UBP16	YPL072W	TIF5	P38431	405 aa	Known RBP	2.76	□□□□□ -1.97
UBP16	YPL072W	FLC2	P39719	783 aa		2.76	□□□□□ -1.97
UBP16	YPL072W	MKT1	P40850	830 aa	Known RBP	2.76	□□□□□ -1.97
UBP16	YPL072W	TAF11	Q04226	346 aa		2.76	□□□□□ -1.97
UBP16	YPL072W	GLO2	Q05584	274 aa		2.76	□□□□□ -1.97
UBP16	YPL072W	TEN1	Q07921	160 aa		2.76	□□□□□ -1.97
UBP16	YPL072W	AYT1	Q12226	474 aa		2.76	□□□□□ -1.97
UBP16	YPL072W	CKA1	P15790	372 aa		2.75	□□□□□ -1.97
UBP16	YPL072W	CDC60	P26637	1090 aa	Known RBP	2.75	□□□□□ -1.97
UBP16	YPL072W	NFU1	P32860	256 aa		2.75	□□□□□ -1.97
UBP16	YPL072W	YKL100C	P34248	587 aa		2.75	□□□□□ -1.97
UBP16	YPL072W	PCA1	P38360	1216 aa		2.75	□□□□□ -1.97
UBP16	YPL072W	IDP2	P41939	412 aa		2.75	□□□□□ -1.97
UBP16	YPL072W	YGL242C	P53066	181 aa		2.75	□□□□□ -1.97
UBP16	YPL072W	SHE10	P53075	577 aa		2.75	□□□□□ -1.97
UBP16	YPL072W	BUD22	Q04347	519 aa	Known RBP	2.75	□□□□□ -1.97
UBP16	YPL072W	RIX7	Q07844	837 aa	Known RBP	2.75	□□□□□ -1.97
UBP16	YPL072W	ARG3	P05150	338 aa		2.74	□□□□□ -1.97
UBP16	YPL072W	RPL20A	P0CX23	172 aa	Known RBP	2.74	□□□□□ -1.97
UBP16	YPL072W	RPL20B	P0CX24	172 aa	Predicted RBP	2.74	□□□□□ -1.97
UBP16	YPL072W	CBS1	P14066	229 aa		2.74	□□□□□ -1.97
UBP16	YPL072W	AMD1	P15274	810 aa	Known RBP	2.74	□□□□□ -1.97
UBP16	YPL072W	SWH1	P35845	1188 aa		2.74	□□□□□ -1.97
UBP16	YPL072W	MAL33	P38157	468 aa		2.74	□□□□□ -1.97
UBP16	YPL072W	SRP72	P38688	640 aa	Known RBP	2.74	□□□□□ -1.97
UBP16	YPL072W	OSH3	P38713	996 aa	Known RBP	2.74	□□□□□ -1.97
UBP16	YPL072W	VPS52	P39904	641 aa		2.74	□□□□□ -1.97
UBP16	YPL072W	MRX6	P48564	524 aa		2.74	□□□□□ -1.97
UBP16	YPL072W	DSD1	P53095	428 aa		2.74	□□□□□ -1.97
UBP16	YPL072W	ARE2	P53629	642 aa	Known RBP	2.74	□□□□□ -1.97
UBP16	YPL072W	VPS75	P53853	264 aa		2.74	□□□□□ -1.97
UBP16	YPL072W	DPB4	Q04603	196 aa	Known RBP	2.74	□□□□□ -1.97
UBP16	YPL072W	NMD4	Q12129	218 aa		2.74	□□□□□ -1.97
UBP16	YPL072W	PEP5	P12868	1029 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	APE1	P14904	514 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	SGV1	P23293	657 aa	Known RBP	2.73	□□□□□ -1.97
UBP16	YPL072W	SYN8	P31377	255 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	VMA8	P32610	256 aa	Known RBP	2.73	□□□□□ -1.97
UBP16	YPL072W	BYE1	P36106	594 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	DED81	P38707	554 aa	Known RBP	2.73	□□□□□ -1.97
UBP16	YPL072W	GPD2	P41911	440 aa	Known RBP	2.73	□□□□□ -1.97
UBP16	YPL072W	ALT2	P52892	507 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	YGR066C	P53242	292 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	YGR127W	P53275	312 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	DUG3	P53871	357 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	EFM6	P53970	246 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	YML037C	Q03703	340 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	SXM1	Q04175	944 aa	Known RBP	2.73	□□□□□ -1.97
UBP16	YPL072W	SYO1	Q07395	620 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	CAR1	P00812	333 aa	Known RBP	2.73	□□□□□ -1.97
UBP16	YPL072W	HEM2	P05373	342 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	ATR1	P13090	542 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	PUP3	P25451	205 aa	Known RBP	2.73	□□□□□ -1.97
UBP16	YPL072W	POL4	P25615	582 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	YIH1	P25637	258 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	NPL6	P32832	435 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	TIF3	P34167	436 aa	Known RBP	2.73	□□□□□ -1.97
UBP16	YPL072W	YBL055C	P34220	418 aa	Predicted RBP	2.73	□□□□□ -1.97
UBP16	YPL072W	AUR1	P36107	401 aa	Predicted RBP	2.73	□□□□□ -1.97
UBP16	YPL072W	NPR2	P39923	615 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	SPO22	P40511	975 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	PTR3	P43606	678 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	FAR3	P46671	204 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	VID30	P53076	958 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	RSC1	P53236	928 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	SHR3	Q02774	210 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	BNA5	Q05979	453 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	RIM20	Q12033	661 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	YDL009C	Q12210	107 aa		2.73	□□□□□ -1.97
UBP16	YPL072W	MET17	P06106	444 aa		2.72	□□□□□ -1.97
UBP16	YPL072W	BOS1	P25385	244 aa		2.72	□□□□□ -1.97
UBP16	YPL072W	LDB16	P25587	256 aa		2.72	□□□□□ -1.97
UBP16	YPL072W	UBP11	P36026	717 aa		2.72	□□□□□ -1.97
UBP16	YPL072W	YKL023W	P36103	277 aa	Known RBP	2.72	□□□□□ -1.97
UBP16	YPL072W	NUP133	P36161	1157 aa		2.72	□□□□□ -1.97
UBP16	YPL072W	SNG1	P46950	547 aa		2.72	□□□□□ -1.97
UBP16	YPL072W	LYS4	P49367	693 aa	Predicted RBP	2.72	□□□□□ -1.97
UBP16	YPL072W	ERO1	Q03103	563 aa		2.72	□□□□□ -1.97
UBP16	YPL072W	MSC1	Q03104	513 aa		2.72	□□□□□ -1.97
UBP16	YPL072W	RLI1	Q03195	608 aa	Known RBP	2.72	□□□□□ -1.97
UBP16	YPL072W	NGL3	Q03210	505 aa		2.72	□□□□□ -1.97
UBP16	YPL072W	RCF1	Q03713	159 aa		2.72	□□□□□ -1.97
UBP16	YPL072W	YMR155W	Q03795	547 aa		2.72	□□□□□ -1.97
UBP16	YPL072W	ISA2	Q12425	185 aa		2.72	□□□□□ -1.97
UBP16	YPL072W	RTN2	Q12443	393 aa		2.72	□□□□□ -1.97
UBP16	YPL072W	SMC6	Q12749	1114 aa		2.72	□□□□□ -1.97
UBP16	YPL072W	DFR1	P07807	211 aa	Known RBP RIP-Chip data	2.71	□□□□□ -1.98	not detected
UBP16	YPL072W	PMR1	P13586	950 aa		2.71	□□□□□ -1.98
UBP16	YPL072W	KGD1	P20967	1014 aa	Known RBP	2.71	□□□□□ -1.98
UBP16	YPL072W	REC107	P21651	314 aa		2.71	□□□□□ -1.98
UBP16	YPL072W	CLB3	P24870	427 aa		2.71	□□□□□ -1.98
UBP16	YPL072W	ROX1	P25042	368 aa		2.71	□□□□□ -1.98
UBP16	YPL072W	SWI3	P32591	825 aa		2.71	□□□□□ -1.98
UBP16	YPL072W	PMU1	P36069	295 aa		2.71	□□□□□ -1.98
UBP16	YPL072W	TUL1	P36096	758 aa		2.71	□□□□□ -1.98
UBP16	YPL072W	MRPL4	P36517	319 aa		2.71	□□□□□ -1.98
UBP16	YPL072W	ICS2	P38284	255 aa		2.71	□□□□□ -1.98
UBP16	YPL072W	OTU2	P38747	307 aa	Known RBP	2.71	□□□□□ -1.98
UBP16	YPL072W	DOT5	P40553	215 aa		2.71	□□□□□ -1.98

Retrieved 100 of 5,963 RNA–protein pairs in 21.6 ms