RNA–Protein interactions for RNA: ENST00000552130.6

VPS29-210, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,057 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-210ENST00000552130 FBXW10Q5XX13 1052 aa7.62□□□□□ -1.19
VPS29-210ENST00000552130 CASC1Q6TDU7 716 aa7.62□□□□□ -1.19
VPS29-210ENST00000552130 DDX46Q7L014 1031 aaKnown RBP7.62□□□□□ -1.19
VPS29-210ENST00000552130 ARMCX6Q7L4S7 300 aa7.62□□□□□ -1.19
VPS29-210ENST00000552130 CLASRPQ8N2M8 674 aaKnown RBP7.62□□□□□ -1.19
VPS29-210ENST00000552130 GOLM1Q8NBJ4 401 aa7.62□□□□□ -1.19
VPS29-210ENST00000552130 WDR66Q8TBY9 1149 aa7.62□□□□□ -1.19
VPS29-210ENST00000552130 TTC14Q96N46 770 aa7.62□□□□□ -1.19
VPS29-210ENST00000552130 FERD3LQ96RJ6 166 aa7.62□□□□□ -1.19
VPS29-210ENST00000552130 TSPAN18Q96SJ8 248 aa7.62□□□□□ -1.19
VPS29-210ENST00000552130 ALDH8A1Q9H2A2 487 aaPredicted RBP7.62□□□□□ -1.19
VPS29-210ENST00000552130 ATXN3LQ9H3M9 355 aa7.62□□□□□ -1.19
VPS29-210ENST00000552130 ABCB6Q9NP58 842 aa7.62□□□□□ -1.19
VPS29-210ENST00000552130 LEFTY1O75610 366 aa7.61□□□□□ -1.19
VPS29-210ENST00000552130 PF4P02776 101 aa7.61□□□□□ -1.19
VPS29-210ENST00000552130 CEACAM5P06731 702 aa7.61□□□□□ -1.19
VPS29-210ENST00000552130 U2AF1L5P0DN76 240 aaPredicted RBP7.61□□□□□ -1.19
VPS29-210ENST00000552130 PHKG2P15735 406 aa7.61□□□□□ -1.19
VPS29-210ENST00000552130 TYRP1P17643 537 aa7.61□□□□□ -1.19
VPS29-210ENST00000552130 U2AF1Q01081 240 aaKnown RBP eCLIP7.61□□□□□ -1.19
VPS29-210ENST00000552130 ID3Q02535 119 aa7.61□□□□□ -1.19
VPS29-210ENST00000552130 CHAF1AQ13111 956 aaPredicted RBP7.61□□□□□ -1.19
VPS29-210ENST00000552130 PKN1Q16512 942 aa7.61□□□□□ -1.19
VPS29-210ENST00000552130 KIF4BQ2VIQ3 1234 aa7.61□□□□□ -1.19
VPS29-210ENST00000552130 SEZ6Q53EL9 994 aa7.61□□□□□ -1.19
VPS29-210ENST00000552130 COBLL1Q53SF7 1204 aa7.61□□□□□ -1.19
VPS29-210ENST00000552130 RNF219Q5W0B1 726 aaPredicted RBP7.61□□□□□ -1.19
VPS29-210ENST00000552130 PPP4R3AQ6IN85 833 aa7.61□□□□□ -1.19
VPS29-210ENST00000552130 LHFPL2Q6ZUX7 228 aa7.61□□□□□ -1.19
VPS29-210ENST00000552130 KSR1Q8IVT5 923 aa7.61□□□□□ -1.19
VPS29-210ENST00000552130 SMYD4Q8IYR2 804 aaPredicted RBP7.61□□□□□ -1.19
VPS29-210ENST00000552130 USP33Q8TEY7 942 aa7.61□□□□□ -1.19
VPS29-210ENST00000552130 FAM84AQ96KN4 292 aa7.61□□□□□ -1.19
VPS29-210ENST00000552130 DUSP23Q9BVJ7 150 aa7.61□□□□□ -1.19
VPS29-210ENST00000552130 CSRNP2Q9H175 543 aa7.61□□□□□ -1.19
VPS29-210ENST00000552130 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP7.61□□□□□ -1.19
VPS29-210ENST00000552130 GTF2IRD1Q9UHL9 959 aa7.61□□□□□ -1.19
VPS29-210ENST00000552130 NAP1L2Q9ULW6 460 aaPredicted RBP7.61□□□□□ -1.19
VPS29-210ENST00000552130 SLC45A1Q9Y2W3 748 aa7.61□□□□□ -1.19
VPS29-210ENST00000552130 SETD1BQ9UPS6 1966 aaKnown RBP7.6□□□□□ -1.19
VPS29-210ENST00000552130 CLSPNQ9HAW4 1339 aa7.6□□□□□ -1.19
VPS29-210ENST00000552130 DNAJC25-GNG10A0A024R161 153 aa7.6□□□□□ -1.19
VPS29-210ENST00000552130 B2RBV5 119 aa7.6□□□□□ -1.19
VPS29-210ENST00000552130 APAF1O14727 1248 aa7.6□□□□□ -1.19
VPS29-210ENST00000552130 ZNF280AP59817 542 aaPredicted RBP7.6□□□□□ -1.19
VPS29-210ENST00000552130 STRN3Q13033 797 aa7.6□□□□□ -1.19
VPS29-210ENST00000552130 STK3Q13188 491 aa7.6□□□□□ -1.19
VPS29-210ENST00000552130 CDC37Q16543 378 aaPredicted RBP7.6□□□□□ -1.19
VPS29-210ENST00000552130 AOC3Q16853 763 aa7.6□□□□□ -1.19
VPS29-210ENST00000552130 LONRF2Q1L5Z9 754 aa7.6□□□□□ -1.19
VPS29-210ENST00000552130 JAKMIP3Q5VZ66 844 aa7.6□□□□□ -1.19
VPS29-210ENST00000552130 SLC23A3Q6PIS1 610 aa7.6□□□□□ -1.19
VPS29-210ENST00000552130 C1orf228Q6PIY5 440 aa7.6□□□□□ -1.19
VPS29-210ENST00000552130 ZSCAN30Q86W11 494 aa7.6□□□□□ -1.19
VPS29-210ENST00000552130 GJA10Q969M2 543 aa7.6□□□□□ -1.19
VPS29-210ENST00000552130 HRASLS5Q96KN8 279 aa7.6□□□□□ -1.19
VPS29-210ENST00000552130 KIF2CQ99661 725 aa7.6□□□□□ -1.19
VPS29-210ENST00000552130 EHD4Q9H223 541 aa7.6□□□□□ -1.19
VPS29-210ENST00000552130 CNNM2Q9H8M5 875 aa7.6□□□□□ -1.19
VPS29-210ENST00000552130 LUC7LQ9NQ29 371 aaKnown RBP7.6□□□□□ -1.19
VPS29-210ENST00000552130 KRT82Q9NSB4 513 aa7.6□□□□□ -1.19
VPS29-210ENST00000552130 SPEF1Q9Y4P9 236 aa7.6□□□□□ -1.19
VPS29-210ENST00000552130 TMEM265A0A087WTH1 108 aa7.59□□□□□ -1.19
VPS29-210ENST00000552130 GPR39O43194 453 aa7.59□□□□□ -1.19
VPS29-210ENST00000552130 CBFA2T2O43439 604 aa7.59□□□□□ -1.19
VPS29-210ENST00000552130 FAAP100Q0VG06 881 aa7.59□□□□□ -1.19
VPS29-210ENST00000552130 DDX10Q13206 875 aaKnown RBP7.59□□□□□ -1.19
VPS29-210ENST00000552130 GRM2Q14416 872 aa7.59□□□□□ -1.19
VPS29-210ENST00000552130 KRT72Q14CN4 511 aa7.59□□□□□ -1.19
VPS29-210ENST00000552130 SAFBQ15424 915 aaKnown RBP eCLIP7.59□□□□□ -1.19
VPS29-210ENST00000552130 ZC3H12BQ5HYM0 836 aaKnown RBP7.59□□□□□ -1.19
VPS29-210ENST00000552130 TTLL5Q6EMB2 1281 aa7.59□□□□□ -1.19
VPS29-210ENST00000552130 CNNM4Q6P4Q7 775 aa7.59□□□□□ -1.19
VPS29-210ENST00000552130 FAM214BQ7L5A3 538 aa7.59□□□□□ -1.19
VPS29-210ENST00000552130 ANKRD23Q86SG2 305 aa7.59□□□□□ -1.19
VPS29-210ENST00000552130 C3orf58Q8NDZ4 430 aa7.59□□□□□ -1.19
VPS29-210ENST00000552130 LEO1Q8WVC0 666 aaPredicted RBP7.59□□□□□ -1.19
VPS29-210ENST00000552130 SPATA9Q9BWV2 254 aa7.59□□□□□ -1.19
VPS29-210ENST00000552130 PIDD1Q9HB75 910 aa7.59□□□□□ -1.19
VPS29-210ENST00000552130 CWC25Q9NXE8 425 aaPredicted RBP7.59□□□□□ -1.19
VPS29-210ENST00000552130 TRHDEQ9UKU6 1024 aa7.59□□□□□ -1.19
VPS29-210ENST00000552130 TLR6Q9Y2C9 796 aa7.59□□□□□ -1.19
VPS29-210ENST00000552130 DGKBQ9Y6T7 804 aa7.59□□□□□ -1.19
VPS29-210ENST00000552130 A0A1W2PRQ8 180 aa7.58□□□□□ -1.2
VPS29-210ENST00000552130 ZNF503-AS2A6NEH8 195 aa7.58□□□□□ -1.2
VPS29-210ENST00000552130 GABRDO14764 452 aa7.58□□□□□ -1.2
VPS29-210ENST00000552130 RHOBTB3O94955 611 aa7.58□□□□□ -1.2
VPS29-210ENST00000552130 RPN1P04843 607 aaKnown RBP7.58□□□□□ -1.2
VPS29-210ENST00000552130 HSP90AB1P08238 724 aaKnown RBP7.58□□□□□ -1.2
VPS29-210ENST00000552130 SLFN14P0C7P3 912 aa7.58□□□□□ -1.2
VPS29-210ENST00000552130 RENBPP51606 427 aa7.58□□□□□ -1.2
VPS29-210ENST00000552130 LMNB2Q03252 620 aa7.58□□□□□ -1.2
VPS29-210ENST00000552130 CAMK2GQ13555 558 aaPredicted RBP7.58□□□□□ -1.2
VPS29-210ENST00000552130 TTLL4Q14679 1199 aa7.58□□□□□ -1.2
VPS29-210ENST00000552130 TBC1D10BQ4KMP7 808 aaPredicted RBP7.58□□□□□ -1.2
VPS29-210ENST00000552130 FAM133BQ5BKY9 247 aaKnown RBP7.58□□□□□ -1.2
VPS29-210ENST00000552130 CFAP161Q6P656 301 aa7.58□□□□□ -1.2
VPS29-210ENST00000552130 LVRNQ6Q4G3 990 aa7.58□□□□□ -1.2
VPS29-210ENST00000552130 FAM196AQ6ZSG2 479 aa7.58□□□□□ -1.2
VPS29-210ENST00000552130 MAATS1Q7Z4T9 603 aa7.58□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms