RNA–Protein interactions for RNA: ENST00000493455.6

HPS4-216, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 3

Gene HPS4, Length 986 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-216ENST00000493455 TRIM47Q96LD4 638 aa18.1■□□□□ 0.49
HPS4-216ENST00000493455 LCTP09848 1927 aa18.1■□□□□ 0.49
HPS4-216ENST00000493455 CEP350Q5VT06 3117 aa18.09■□□□□ 0.49
HPS4-216ENST00000493455 VPS37CA5D8V6 355 aaPredicted RBP18.09■□□□□ 0.49
HPS4-216ENST00000493455 OPLAHO14841 1288 aa18.09■□□□□ 0.49
HPS4-216ENST00000493455 HSPA8P11142 646 aaKnown RBP18.09■□□□□ 0.49
HPS4-216ENST00000493455 PTPREP23469 700 aa18.09■□□□□ 0.49
HPS4-216ENST00000493455 ADORA2AP29274 412 aa18.09■□□□□ 0.49
HPS4-216ENST00000493455 RPS6P62753 249 aaKnown RBP18.09■□□□□ 0.49
HPS4-216ENST00000493455 LARP1BQ659C4 914 aaKnown RBP18.09■□□□□ 0.49
HPS4-216ENST00000493455 RASGRP4Q8TDF6 673 aa18.09■□□□□ 0.49
HPS4-216ENST00000493455 PGBD1Q96JS3 809 aa18.09■□□□□ 0.49
HPS4-216ENST00000493455 PURBQ96QR8 312 aaKnown RBP18.09■□□□□ 0.49
HPS4-216ENST00000493455 SH3GLB2Q9NR46 395 aa18.09■□□□□ 0.49
HPS4-216ENST00000493455 TMEM260Q9NX78 707 aa18.09■□□□□ 0.49
HPS4-216ENST00000493455 BIN2Q9UBW5 565 aaPredicted RBP18.09■□□□□ 0.49
HPS4-216ENST00000493455 ADAMTS3O15072 1205 aa18.08■□□□□ 0.48
HPS4-216ENST00000493455 MRPL12P52815 198 aaKnown RBP18.08■□□□□ 0.48
HPS4-216ENST00000493455 LBX1P52954 281 aa18.08■□□□□ 0.48
HPS4-216ENST00000493455 CAP1Q01518 475 aa18.08■□□□□ 0.48
HPS4-216ENST00000493455 GNL2Q13823 731 aaKnown RBP18.08■□□□□ 0.48
HPS4-216ENST00000493455 JAKMIP3Q5VZ66 844 aa18.08■□□□□ 0.48
HPS4-216ENST00000493455 DPP9Q86TI2 863 aa18.08■□□□□ 0.48
HPS4-216ENST00000493455 PHF20Q9BVI0 1012 aa18.08■□□□□ 0.48
HPS4-216ENST00000493455 RIC8AQ9NPQ8 531 aa18.08■□□□□ 0.48
HPS4-216ENST00000493455 CYP39A1Q9NYL5 469 aa18.08■□□□□ 0.48
HPS4-216ENST00000493455 PFASO15067 1338 aa18.07■□□□□ 0.48
HPS4-216ENST00000493455 POTEB2H3BUK9 544 aa18.07■□□□□ 0.48
HPS4-216ENST00000493455 CYP2B6P20813 491 aa18.07■□□□□ 0.48
HPS4-216ENST00000493455 GNA11P29992 359 aa18.07■□□□□ 0.48
HPS4-216ENST00000493455 UBXN2AP68543 259 aa18.07■□□□□ 0.48
HPS4-216ENST00000493455 CNTN2Q02246 1040 aa18.07■□□□□ 0.48
HPS4-216ENST00000493455 MCTP1Q6DN14 999 aa18.07■□□□□ 0.48
HPS4-216ENST00000493455 NUDT12Q9BQG2 462 aa18.07■□□□□ 0.48
HPS4-216ENST00000493455 ZMYND12Q9H0C1 365 aa18.07■□□□□ 0.48
HPS4-216ENST00000493455 BRMS1Q9HCU9 246 aa18.07■□□□□ 0.48
HPS4-216ENST00000493455 PCDHA4Q9UN74 947 aa18.07■□□□□ 0.48
HPS4-216ENST00000493455 GABRQQ9UN88 632 aa18.07■□□□□ 0.48
HPS4-216ENST00000493455 SLC15A5A6NIM6 579 aa18.06■□□□□ 0.48
HPS4-216ENST00000493455 STRNO43815 780 aa18.06■□□□□ 0.48
HPS4-216ENST00000493455 KRT2P35908 639 aa18.06■□□□□ 0.48
HPS4-216ENST00000493455 CTCFP49711 727 aaPredicted RBP18.06■□□□□ 0.48
HPS4-216ENST00000493455 GRB14Q14449 540 aa18.06■□□□□ 0.48
HPS4-216ENST00000493455 SAFBQ15424 915 aaKnown RBP eCLIP18.06■□□□□ 0.48
HPS4-216ENST00000493455 FOXD4L5Q5VV16 416 aaPredicted RBP18.06■□□□□ 0.48
HPS4-216ENST00000493455 BLIDQ8IZY5 108 aa18.06■□□□□ 0.48
HPS4-216ENST00000493455 REXO1Q8N1G1 1221 aaKnown RBP18.06■□□□□ 0.48
HPS4-216ENST00000493455 OXER1Q8TDS5 423 aa18.06■□□□□ 0.48
HPS4-216ENST00000493455 SYTL5Q8TDW5 730 aaPredicted RBP18.06■□□□□ 0.48
HPS4-216ENST00000493455 FOXD4L4Q8WXT5 416 aaPredicted RBP18.06■□□□□ 0.48
HPS4-216ENST00000493455 TRIM17Q9Y577 477 aa18.06■□□□□ 0.48
HPS4-216ENST00000493455 ZNF236Q9UL36 1845 aa18.06■□□□□ 0.48
HPS4-216ENST00000493455 MCM3APO60318 1980 aa18.06■□□□□ 0.48
HPS4-216ENST00000493455 ESYT2A0FGR8 921 aa18.05■□□□□ 0.48
HPS4-216ENST00000493455 SPDYE3A6NKU9 549 aa18.05■□□□□ 0.48
HPS4-216ENST00000493455 MEIS2O14770 477 aa18.05■□□□□ 0.48
HPS4-216ENST00000493455 MMP1P03956 469 aa18.05■□□□□ 0.48
HPS4-216ENST00000493455 HSD17B4P51659 736 aa18.05■□□□□ 0.48
HPS4-216ENST00000493455 PRKCZQ05513 592 aa18.05■□□□□ 0.48
HPS4-216ENST00000493455 MAP2K5Q13163 448 aa18.05■□□□□ 0.48
HPS4-216ENST00000493455 ARHGEF6Q15052 776 aa18.05■□□□□ 0.48
HPS4-216ENST00000493455 DIS3L2Q8IYB7 885 aaKnown RBP18.05■□□□□ 0.48
HPS4-216ENST00000493455 BICD2Q8TD16 824 aa18.05■□□□□ 0.48
HPS4-216ENST00000493455 TAAR1Q96RJ0 339 aa18.05■□□□□ 0.48
HPS4-216ENST00000493455 COL20A1Q9P218 1284 aa18.05■□□□□ 0.48
HPS4-216ENST00000493455 COBLO75128 1261 aa18.04■□□□□ 0.48
HPS4-216ENST00000493455 EIF2AK2P19525 551 aaKnown RBP18.04■□□□□ 0.48
HPS4-216ENST00000493455 PDCP20941 246 aa18.04■□□□□ 0.48
HPS4-216ENST00000493455 SYT1P21579 422 aa18.04■□□□□ 0.48
HPS4-216ENST00000493455 HOXD10P28358 340 aa18.04■□□□□ 0.48
HPS4-216ENST00000493455 RGS2P41220 211 aa18.04■□□□□ 0.48
HPS4-216ENST00000493455 NR5A1Q13285 461 aa18.04■□□□□ 0.48
HPS4-216ENST00000493455 NOM1Q5C9Z4 860 aaKnown RBP18.04■□□□□ 0.48
HPS4-216ENST00000493455 MORN1Q5T089 497 aa18.04■□□□□ 0.48
HPS4-216ENST00000493455 ARHGEF16Q5VV41 709 aa18.04■□□□□ 0.48
HPS4-216ENST00000493455 RGS22Q8NE09 1264 aa18.04■□□□□ 0.48
HPS4-216ENST00000493455 FBXO18Q8NFZ0 1043 aa18.04■□□□□ 0.48
HPS4-216ENST00000493455 SOCS4Q8WXH5 440 aa18.04■□□□□ 0.48
HPS4-216ENST00000493455 GLT8D2Q9H1C3 349 aa18.04■□□□□ 0.48
HPS4-216ENST00000493455 DDX49Q9Y6V7 483 aaKnown RBP18.04■□□□□ 0.48
HPS4-216ENST00000493455 MYH7BA7E2Y1 1941 aa18.04■□□□□ 0.48
HPS4-216ENST00000493455 BTBD18B2RXH4 712 aa18.03■□□□□ 0.48
HPS4-216ENST00000493455 FLT3LGP49771 235 aa18.03■□□□□ 0.48
HPS4-216ENST00000493455 NPY5RQ15761 445 aa18.03■□□□□ 0.48
HPS4-216ENST00000493455 ABRAQ8N0Z2 381 aa18.03■□□□□ 0.48
HPS4-216ENST00000493455 NPLOC4Q8TAT6 608 aa18.03■□□□□ 0.48
HPS4-216ENST00000493455 ZFP91Q96JP5 570 aaPredicted RBP18.03■□□□□ 0.48
HPS4-216ENST00000493455 RMDN3Q96TC7 470 aa18.03■□□□□ 0.48
HPS4-216ENST00000493455 ANO3Q9BYT9 981 aa18.03■□□□□ 0.48
HPS4-216ENST00000493455 SLC5A4Q9NY91 659 aa18.03■□□□□ 0.48
HPS4-216ENST00000493455 PCDHA6Q9UN73 950 aa18.03■□□□□ 0.48
HPS4-216ENST00000493455 PCDHA8Q9Y5H6 950 aa18.03■□□□□ 0.48
HPS4-216ENST00000493455 CCDC194A0A1B0GVG4 234 aa18.02■□□□□ 0.48
HPS4-216ENST00000493455 SOWAHBA6NEL2 793 aa18.02■□□□□ 0.48
HPS4-216ENST00000493455 PIK3CDO00329 1044 aa18.02■□□□□ 0.48
HPS4-216ENST00000493455 MYCLP12524 364 aaPredicted RBP18.02■□□□□ 0.48
HPS4-216ENST00000493455 GALNT17Q6IS24 598 aa18.02■□□□□ 0.48
HPS4-216ENST00000493455 PIK3AP1Q6ZUJ8 805 aa18.02■□□□□ 0.48
HPS4-216ENST00000493455 DHX30Q7L2E3 1194 aaKnown RBP eCLIP18.02■□□□□ 0.48
HPS4-216ENST00000493455 FERMT3Q86UX7 667 aa18.02■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms