RNA–Protein interactions for RNA: ENST00000317610.11

RTN4-201, Transcript of reticulon 4, humanhuman

TSL 1 (best) BASIC

Gene RTN4, Length 2,333 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN4-201ENST00000317610 FKBP15Q5T1M5 1219 aa21.28■■□□□ 1
RTN4-201ENST00000317610 CCDC42Q96M95 316 aa21.28■■□□□ 1
RTN4-201ENST00000317610 ZNF652Q9Y2D9 606 aa21.28■■□□□ 1
RTN4-201ENST00000317610 LOC102724428A0A0B4J2F2 783 aa21.28■■□□□ 1
RTN4-201ENST00000317610 CYTH3O43739 400 aa21.28■■□□□ 1
RTN4-201ENST00000317610 USO1O60763 962 aaKnown RBP21.28■■□□□ 1
RTN4-201ENST00000317610 SIK1P57059 783 aa21.28■■□□□ 1
RTN4-201ENST00000317610 TCP11L1Q9NUJ3 509 aa21.28■■□□□ 1
RTN4-201ENST00000317610 TACC1O75410 805 aa21.27■■□□□ 1
RTN4-201ENST00000317610 OR52Z1P0C646 297 aa21.27■■□□□ 1
RTN4-201ENST00000317610 CCDC178Q5BJE1 867 aa21.27■■□□□ 1
RTN4-201ENST00000317610 FAM76AQ8TAV0 307 aa21.27■■□□□ 1
RTN4-201ENST00000317610 ZFP91Q96JP5 570 aaPredicted RBP21.27■■□□□ 1
RTN4-201ENST00000317610 PCMTD1Q96MG8 357 aaPredicted RBP21.27■■□□□ 1
RTN4-201ENST00000317610 GDAP1L1Q96MZ0 367 aa21.27■■□□□ 1
RTN4-201ENST00000317610 ROBO3Q96MS0 1386 aa21.27■■□□□ 1
RTN4-201ENST00000317610 GOLGA6BA6NDN3 693 aa21.27■□□□□ 0.99
RTN4-201ENST00000317610 KLRK1P26718 216 aa21.27■□□□□ 0.99
RTN4-201ENST00000317610 TXNRD1Q16881 649 aa21.27■□□□□ 0.99
RTN4-201ENST00000317610 CLEC4GQ6UXB4 293 aa21.27■□□□□ 0.99
RTN4-201ENST00000317610 MCM9Q9NXL9 1143 aa21.27■□□□□ 0.99
RTN4-201ENST00000317610 SIK3Q9Y2K2 1263 aa21.27■□□□□ 0.99
RTN4-201ENST00000317610 PCDHA13Q9Y5I0 950 aa21.27■□□□□ 0.99
RTN4-201ENST00000317610 CAPN6Q9Y6Q1 641 aa21.27■□□□□ 0.99
RTN4-201ENST00000317610 FCER1AP12319 257 aa21.26■□□□□ 0.99
RTN4-201ENST00000317610 PRDX5P30044 214 aa21.26■□□□□ 0.99
RTN4-201ENST00000317610 NOP2P46087 812 aaKnown RBP21.26■□□□□ 0.99
RTN4-201ENST00000317610 ASIC1P78348 528 aa21.26■□□□□ 0.99
RTN4-201ENST00000317610 C12orf60Q5U649 245 aa21.26■□□□□ 0.99
RTN4-201ENST00000317610 ARHGAP20Q9P2F6 1191 aa21.26■□□□□ 0.99
RTN4-201ENST00000317610 ABCB11O95342 1321 aa21.26■□□□□ 0.99
RTN4-201ENST00000317610 PLEKP08567 350 aaPredicted RBP21.26■□□□□ 0.99
RTN4-201ENST00000317610 USP17L8P0C7I0 530 aa21.26■□□□□ 0.99
RTN4-201ENST00000317610 CCDC96Q2M329 555 aa21.26■□□□□ 0.99
RTN4-201ENST00000317610 CENPPQ6IPU0 288 aa21.26■□□□□ 0.99
RTN4-201ENST00000317610 CNNM4Q6P4Q7 775 aa21.26■□□□□ 0.99
RTN4-201ENST00000317610 KRT26Q7Z3Y9 468 aa21.26■□□□□ 0.99
RTN4-201ENST00000317610 HEATR3Q7Z4Q2 680 aa21.26■□□□□ 0.99
RTN4-201ENST00000317610 KIAA0895Q8NCT3 520 aa21.26■□□□□ 0.99
RTN4-201ENST00000317610 CELF1Q92879 486 aaKnown RBP21.26■□□□□ 0.99
RTN4-201ENST00000317610 SH3GL2Q99962 352 aa21.26■□□□□ 0.99
RTN4-201ENST00000317610 IFIH1Q9BYX4 1025 aaKnown RBP21.26■□□□□ 0.99
RTN4-201ENST00000317610 SEMA6BQ9H3T3 888 aa21.26■□□□□ 0.99
RTN4-201ENST00000317610 PALM3A6NDB9 673 aaPredicted RBP21.25■□□□□ 0.99
RTN4-201ENST00000317610 NKRFO15226 690 aaKnown RBP eCLIP21.25■□□□□ 0.99
RTN4-201ENST00000317610 AMPD3Q01432 767 aa21.25■□□□□ 0.99
RTN4-201ENST00000317610 EEF2KMTQ96G04 330 aa21.25■□□□□ 0.99
RTN4-201ENST00000317610 ZMYND12Q9H0C1 365 aa21.25■□□□□ 0.99
RTN4-201ENST00000317610 GOLGA6CA6NDK9 693 aa21.24■□□□□ 0.99
RTN4-201ENST00000317610 GOLGA6DP0CG33 693 aa21.24■□□□□ 0.99
RTN4-201ENST00000317610 TCP1P17987 556 aaKnown RBP21.24■□□□□ 0.99
RTN4-201ENST00000317610 HIBADHP31937 336 aaKnown RBP21.24■□□□□ 0.99
RTN4-201ENST00000317610 VWA3BQ502W6 1294 aa21.24■□□□□ 0.99
RTN4-201ENST00000317610 DNAJC21Q5F1R6 531 aaKnown RBP21.24■□□□□ 0.99
RTN4-201ENST00000317610 KRT25Q7Z3Z0 450 aa21.24■□□□□ 0.99
RTN4-201ENST00000317610 SPATA4Q8NEY3 305 aa21.24■□□□□ 0.99
RTN4-201ENST00000317610 SMCR8Q8TEV9 937 aaPredicted RBP21.24■□□□□ 0.99
RTN4-201ENST00000317610 LZTS2Q9BRK4 669 aa21.24■□□□□ 0.99
RTN4-201ENST00000317610 GOLGA6AQ9NYA3 693 aa21.24■□□□□ 0.99
RTN4-201ENST00000317610 TNFRSF8P28908 595 aa21.24■□□□□ 0.99
RTN4-201ENST00000317610 KIF11P52732 1056 aa21.24■□□□□ 0.99
RTN4-201ENST00000317610 OSBPL9Q96SU4 736 aa21.24■□□□□ 0.99
RTN4-201ENST00000317610 LRRC1Q9BTT6 524 aa21.24■□□□□ 0.99
RTN4-201ENST00000317610 COL5A3P25940 1745 aaPredicted RBP21.24■□□□□ 0.99
RTN4-201ENST00000317610 PJA2O43164 708 aa21.23■□□□□ 0.99
RTN4-201ENST00000317610 EZH2Q15910 746 aaKnown RBP21.23■□□□□ 0.99
RTN4-201ENST00000317610 HDAC7Q8WUI4 952 aa21.23■□□□□ 0.99
RTN4-201ENST00000317610 PPM1EQ8WY54 764 aa21.23■□□□□ 0.99
RTN4-201ENST00000317610 MMTAG2Q9BU76 263 aaKnown RBP21.23■□□□□ 0.99
RTN4-201ENST00000317610 MLXIPQ9HAP2 919 aa21.23■□□□□ 0.99
RTN4-201ENST00000317610 DMGDHQ9UI17 866 aaKnown RBP21.23■□□□□ 0.99
RTN4-201ENST00000317610 HYOU1Q9Y4L1 999 aa21.23■□□□□ 0.99
RTN4-201ENST00000317610 CPP00450 1065 aa21.23■□□□□ 0.99
RTN4-201ENST00000317610 PPFIA1Q13136 1202 aa21.23■□□□□ 0.99
RTN4-201ENST00000317610 SLC10A5Q5PT55 438 aa21.23■□□□□ 0.99
RTN4-201ENST00000317610 PPP1R3FQ6ZSY5 799 aaPredicted RBP21.23■□□□□ 0.99
RTN4-201ENST00000317610 SND1Q7KZF4 910 aaKnown RBP eCLIP21.23■□□□□ 0.993e-12■■■■□ 21.6
RTN4-201ENST00000317610 C2CD5Q86YS7 1000 aa21.23■□□□□ 0.99
RTN4-201ENST00000317610 MYH10P35580 1976 aa21.22■□□□□ 0.99
RTN4-201ENST00000317610 GOLGA8KD6RF30 607 aa21.22■□□□□ 0.99
RTN4-201ENST00000317610 EPHB6O15197 1021 aa21.22■□□□□ 0.99
RTN4-201ENST00000317610 MOCS3O95396 460 aa21.22■□□□□ 0.99
RTN4-201ENST00000317610 ORC2Q13416 577 aaPredicted RBP21.22■□□□□ 0.99
RTN4-201ENST00000317610 SF3B2Q13435 895 aaKnown RBP21.22■□□□□ 0.99
RTN4-201ENST00000317610 NONOQ15233 471 aaKnown RBP eCLIP21.22■□□□□ 0.998e-7■■□□□ 13.4
RTN4-201ENST00000317610 GBP6Q6ZN66 633 aa21.22■□□□□ 0.99
RTN4-201ENST00000317610 EFCAB13Q8IY85 973 aa21.22■□□□□ 0.99
RTN4-201ENST00000317610 NDST4Q9H3R1 872 aa21.22■□□□□ 0.99
RTN4-201ENST00000317610 PLEKHA4Q9H4M7 779 aa21.22■□□□□ 0.99
RTN4-201ENST00000317610 EPB41P11171 864 aaKnown RBP21.22■□□□□ 0.99
RTN4-201ENST00000317610 EIF4A3P38919 411 aaKnown RBP21.22■□□□□ 0.99
RTN4-201ENST00000317610 IRAK1P51617 712 aa21.22■□□□□ 0.99
RTN4-201ENST00000317610 HSPA2P54652 639 aa21.22■□□□□ 0.99
RTN4-201ENST00000317610 MAN2A1Q16706 1144 aa21.22■□□□□ 0.99
RTN4-201ENST00000317610 EMBQ6PCB8 327 aa21.22■□□□□ 0.99
RTN4-201ENST00000317610 ALS2CR12Q96Q35 445 aa21.22■□□□□ 0.99
RTN4-201ENST00000317610 SPZ1Q9BXG8 430 aa21.22■□□□□ 0.99
RTN4-201ENST00000317610 USP17L3A6NCW0 530 aa21.21■□□□□ 0.99
RTN4-201ENST00000317610 USP17L4A6NCW7 530 aa21.21■□□□□ 0.99
RTN4-201ENST00000317610 EPHB4P54760 987 aa21.21■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms