RNA–Protein interactions for RNA: ENST00000293748.9

SYNGAP1-201, Transcript of synaptic Ras GTPase activating protein 1, humanhuman

TSL 5

Gene SYNGAP1, Length 4,556 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNGAP1-201ENST00000293748 RPL13P26373 211 aaKnown RBP13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 PLCB3Q01970 1234 aa13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 CHST3Q7LGC8 479 aa13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 ANKRD13AQ8IZ07 590 aa13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 NDUFB9Q9Y6M9 179 aa13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 NOL3O60936 208 aaKnown RBP13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 PLCD1P51178 756 aa13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 PPP4CP60510 307 aa13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 NOC4LQ9BVI4 516 aaKnown RBP13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 ANTXR1Q9H6X2 564 aa13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 SYNCQ9H7C4 482 aa13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 SAP30BPQ9UHR5 308 aaKnown RBP13.13□□□□□ -0.31
SYNGAP1-201ENST00000293748 GADD45BO75293 160 aaPredicted RBP13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 CACNB3P54284 484 aa13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 TSNAXIP1Q2TAA8 658 aa13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 SEL1L2Q5TEA6 688 aa13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 BICD1Q96G01 975 aa13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 FEZ2Q9UHY8 353 aaPredicted RBP13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 HERC5Q9UII4 1024 aaKnown RBP13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 FER1L6Q2WGJ9 1857 aa13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 PPFIA4O75335 1185 aa13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 SARNPP82979 210 aaKnown RBP13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 SECISBP2LQ93073 1101 aaKnown RBP13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 TM6SF1Q9BZW5 370 aa13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 VPS16Q9H269 839 aa13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 NFE2L3Q9Y4A8 694 aa13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 SLC27A2O14975 620 aa13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 TMEM87BQ96K49 555 aa13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 TSKSQ9UJT2 592 aa13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 RPAP1Q9BWH6 1393 aaPredicted RBP13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 SYNRGQ9UMZ2 1314 aa13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 BUB1BO60566 1050 aaPredicted RBP13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 KRT9P35527 623 aa13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 MAP2K2P36507 400 aa13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 PABPC4Q13310 644 aaKnown RBP eCLIP13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 CCDC63Q8NA47 563 aa13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 NOX5Q96PH1 765 aa13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 IMPG2Q9BZV3 1241 aa13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 RBM28Q9NW13 759 aaKnown RBP13.12□□□□□ -0.31
SYNGAP1-201ENST00000293748 GAKO14976 1311 aa13.11□□□□□ -0.31
SYNGAP1-201ENST00000293748 CIB2O75838 187 aa13.11□□□□□ -0.31
SYNGAP1-201ENST00000293748 ZNF202O95125 648 aa13.11□□□□□ -0.31
SYNGAP1-201ENST00000293748 EEF2P13639 858 aaKnown RBP13.11□□□□□ -0.31
SYNGAP1-201ENST00000293748 FAM173BQ6P4H8 233 aa13.11□□□□□ -0.31
SYNGAP1-201ENST00000293748 WRNIP1Q96S55 665 aa13.11□□□□□ -0.31
SYNGAP1-201ENST00000293748 CREBZFQ9NS37 354 aa13.11□□□□□ -0.31
SYNGAP1-201ENST00000293748 TMOD4Q9NZQ9 345 aa13.11□□□□□ -0.31
SYNGAP1-201ENST00000293748 GPAA1O43292 621 aa13.11□□□□□ -0.31
SYNGAP1-201ENST00000293748 MCM7P33993 719 aa13.11□□□□□ -0.31
SYNGAP1-201ENST00000293748 SREBF2Q12772 1141 aa13.11□□□□□ -0.31
SYNGAP1-201ENST00000293748 REM2Q8IYK8 340 aaPredicted RBP13.11□□□□□ -0.31
SYNGAP1-201ENST00000293748 RGS22Q8NE09 1264 aa13.11□□□□□ -0.31
SYNGAP1-201ENST00000293748 ZBTB9Q96C00 473 aa13.11□□□□□ -0.31
SYNGAP1-201ENST00000293748 CCDC51Q96ER9 411 aa13.11□□□□□ -0.31
SYNGAP1-201ENST00000293748 CSRNP2Q9H175 543 aa13.11□□□□□ -0.31
SYNGAP1-201ENST00000293748 COL1A1P02452 1464 aaPredicted RBP13.11□□□□□ -0.31
SYNGAP1-201ENST00000293748 ARHGEF6Q15052 776 aa13.11□□□□□ -0.31
SYNGAP1-201ENST00000293748 UTP14CQ5TAP6 766 aaKnown RBP13.11□□□□□ -0.31
SYNGAP1-201ENST00000293748 NEDD9Q14511 834 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 MAP7D1Q3KQU3 841 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 SPATS2Q86XZ4 545 aaKnown RBP13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 SH3RF3Q8TEJ3 882 aaPredicted RBP13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 IDI2Q9BXS1 227 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 OSBPL3Q9H4L5 887 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 SNED1Q8TER0 1413 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 VWA3AA6NCI4 1184 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 TMEM110-MUSTN1A8MSY1 372 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 DEXIO95424 95 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 GBP1P32455 592 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 ETF1P62495 437 aaKnown RBP13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 MTMR3Q13615 1198 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 APOBEC3HQ6NTF7 200 aaKnown RBP13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 OTUD7AQ8TE49 926 aaPredicted RBP13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 EDC3Q96F86 508 aaKnown RBP13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 CTNND2Q9UQB3 1225 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 LRRC37AA6NMS7 1700 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 RAPGEF1Q13905 1077 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 WHAMMP3Q1A5X7 153 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 SND1Q7KZF4 910 aaKnown RBP eCLIP13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 CCDC65Q8IXS2 484 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 OSBPL5Q9H0X9 879 aaPredicted RBP13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 GINM1Q9NU53 330 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 SPEF2Q9C093 1822 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 RFX7Q2KHR2 1363 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 KIAA1551Q9HCM1 1747 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 DYNLL1P63167 89 aaKnown RBP13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 NOGQ13253 232 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 FYB2Q5VWT5 728 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 CCDC17Q96LX7 622 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 SERPINB13Q9UIV8 391 aa13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 ZNF215Q9UL58 517 aaPredicted RBP13.1□□□□□ -0.31
SYNGAP1-201ENST00000293748 UNCXA6NJT0 531 aa13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 EFCAB8A8MWE9 144 aa13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 NPM3O75607 178 aaKnown RBP13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 MAGEA1P43355 309 aa13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 PAK1Q13153 545 aa13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 RGMBQ6NW40 437 aa13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 SV2BQ7L1I2 683 aa13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 TAOK1Q7L7X3 1001 aa13.09□□□□□ -0.31
SYNGAP1-201ENST00000293748 DDX55Q8NHQ9 600 aaKnown RBP eCLIP13.09□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 170.3 ms