RNA–Protein interactions for RNA: YGR009C

SEC9, Transcript of t-SNARE protein required for secretory vesicle-plasma membrane fusion, yeast

Gene SEC9, Length 1,956 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SEC9	YGR009C	MATALPHA1	P0CY06	175 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	HMLALPHA1	P0CY07	175 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	PCK1	P10963	549 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	CPR2	P23285	205 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	VBA3	P25594	458 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	PCL2	P25693	308 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	CIN8	P27895	1000 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	CAM1	P29547	415 aa	Known RBP	4.81	□□□□□ -1.64
SEC9	YGR009C	CCR4	P31384	837 aa	Known RBP	4.81	□□□□□ -1.64
SEC9	YGR009C	MF(ALPHA)2	P32435	120 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	PPS1	P38148	807 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	HEK2	P38199	381 aa	Known RBP RIP-Chip data	4.81	□□□□□ -1.64	not detected
SEC9	YGR009C	FAT1	P38225	669 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	SBE22	P38814	852 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	UBA4	P38820	440 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	ORC6	P38826	435 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	LYS9	P38999	446 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	YEL025C	P39991	1188 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	SSU1	P41930	458 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	HXT14	P42833	540 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	AIM24	P47127	394 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	RPS7B	P48164	190 aa	Known RBP	4.81	□□□□□ -1.64
SEC9	YGR009C	PRP24	P49960	444 aa	Known RBP	4.81	□□□□□ -1.64
SEC9	YGR009C	YGL159W	P53110	370 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	EEB1	Q02891	456 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	RNY1	Q02933	434 aa	Known RBP	4.81	□□□□□ -1.64
SEC9	YGR009C	SKY1	Q03656	742 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	FAR10	Q06001	478 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	HDA3	Q06623	655 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	MHR1	Q06630	226 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	GUD1	Q07729	489 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	RFU1	Q08003	200 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	KCS1	Q12494	1050 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	PNO1	Q99216	274 aa	Known RBP	4.81	□□□□□ -1.64
SEC9	YGR009C	TRM732	Q03496	1420 aa		4.81	□□□□□ -1.64
SEC9	YGR009C	NFT1	P0CE68	1218 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	COS2	P0CX12	379 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	COS3	P0CX13	379 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	RPL1A	P0CX43	217 aa	Known RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	RPL1B	P0CX44	217 aa	Known RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	CBS2	P14905	389 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	AMD2	P22580	549 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	IFM1	P25038	676 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	RNA15	P25299	296 aa	Predicted RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	SCJ1	P25303	377 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	SIP1	P32578	815 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	MRT4	P33201	236 aa	Known RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	KES1	P35844	434 aa	Known RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	PTK1	P36002	662 aa	Predicted RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	EDS1	P38073	919 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	YJL206C	P39529	758 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	SAD1	P43589	448 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	YFR018C	P43599	363 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	DAN4	P47179	1161 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	PAC10	P48363	199 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	MRX6	P48564	524 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	PNC1	P53184	216 aa	Known RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	SHY1	P53266	389 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	CPR6	P53691	371 aa	Known RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	MFM1	Q02783	413 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	ROD1	Q02805	837 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	ENT5	Q03769	411 aa	Known RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	SSY1	Q03770	852 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	YDR239C	Q03780	787 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	ROY1	Q04847	553 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	VTA1	Q06263	330 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	CTS2	Q06350	511 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	YPR127W	Q06494	345 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	FMP45	Q07651	309 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	YOL075C	Q08234	1294 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	AI5_BETA	Q9ZZX0	354 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	YGL041W-A	P0C5N3	154 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	ABF1	P14164	731 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	KRS1	P15180	591 aa	Known RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	UBC1	P21734	215 aa	Known RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	MCM5	P29496	775 aa	Known RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	FAA1	P30624	700 aa	Known RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	LIP5	P32875	414 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	AIM29	P36154	155 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	GLY1	P37303	387 aa	Known RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	CYC2	P38909	366 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	SAH1	P39954	449 aa	Known RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	RPN3	P40016	523 aa	Known RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	JHD1	P40034	492 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	YER121W	P40076	114 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	GID8	P40208	455 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	EMW1	P42842	904 aa	Known RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	LSM8	P47093	109 aa	Known RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	EFM3	P47163	339 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	RRT6	P53117	311 aa	Predicted RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	TNA1	P53322	534 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	CDC55	Q00362	526 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	SLU7	Q02775	382 aa	Known RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	ADI1	Q03677	179 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	MUS81	Q04149	632 aa	Predicted RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	YMR226C	Q05016	267 aa	Known RBP	4.8	□□□□□ -1.64
SEC9	YGR009C	COA4	Q05809	96 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	ATG23	Q06671	453 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	MFG1	Q07684	458 aa		4.8	□□□□□ -1.64
SEC9	YGR009C	GAS4	Q08271	471 aa		4.8	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 11.7 ms