RNA–Protein interactions for RNA: ENST00000548825.6

PRPF40B-209, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

APPRIS P2 TSL 5 BASIC

Gene PRPF40B, Length 3,307 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-209ENST00000548825 CTAGE6Q86UF2 777 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 CTAGE4Q8IX94 777 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 GRAPLQ8TC17 118 aaPredicted RBP15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 DISP2A7MBM2 1401 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 MYO1BO43795 1136 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 PLEKP08567 350 aaPredicted RBP15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 LONP1P36776 959 aaKnown RBP15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 PLA2G4AP47712 749 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 MAP3K9P80192 1104 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 SHROOM1Q2M3G4 852 aaPredicted RBP15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 SNX29Q8TEQ0 813 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 CNOT6LQ96LI5 555 aaKnown RBP15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 NAPGQ99747 312 aaPredicted RBP15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 VPS18Q9P253 973 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 RWDD2AQ9UIY3 292 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 TTF2Q9UNY4 1162 aaKnown RBP15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 THRAP3Q9Y2W1 955 aaKnown RBP15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 ITGB4P16144 1822 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 LRP6O75581 1613 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 SPEF2Q9C093 1822 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 STXBP3O00186 592 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 ZBTB22O15209 634 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 SERPINB2P05120 415 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 H2AFXP16104 143 aaPredicted RBP15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 GSTO1P78417 241 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 USH1GQ495M9 461 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 NAALADL2Q58DX5 795 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 ANKRD40Q6AI12 368 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 APTXQ7Z2E3 356 aaKnown RBP15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 DGKHQ86XP1 1220 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 KIAA0825Q8IV33 1275 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 NOA1Q8NC60 698 aaKnown RBP15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 GLIS3Q8NEA6 775 aa15.3■□□□□ 0.04
PRPF40B-209ENST00000548825 CALCRLQ16602 461 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 CDKAL1Q5VV42 579 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 SH3RF1Q7Z6J0 888 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 NEK8Q86SG6 692 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 C2CD5Q86YS7 1000 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 LRRC15Q8TF66 581 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 PANX2Q96RD6 677 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 UBR2Q8IWV8 1755 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 A0A0U1RQG5 324 aaPredicted RBP15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 ZNF185O15231 689 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 AKR1B1P15121 316 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 SPAG1Q07617 926 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 PRR5LQ6MZQ0 368 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 CC2D1AQ6P1N0 951 aaPredicted RBP15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 SLC30A10Q6XR72 485 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 TMTC1Q8IUR5 882 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 OR8K1Q8NGG5 319 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 KIFC2Q96AC6 838 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 DBNDD1Q9H9R9 158 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 PDE11AQ9HCR9 933 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 BARHL2Q9NY43 387 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 SMARCAL1Q9NZC9 954 aa15.29■□□□□ 0.04
PRPF40B-209ENST00000548825 AKR1B10O60218 316 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 TRIM37O94972 964 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 LONRF2Q1L5Z9 754 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 USP17L15C9J2P7 530 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 USP17L13C9JLJ4 530 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 USP17L11C9JVI0 530 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 USP17L18D6R9N7 530 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 USP17L22D6RA61 530 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 USP17L17D6RBQ6 530 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 USP17L19D6RCP7 530 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 USP17L20D6RJB6 530 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 NDUFA10O95299 355 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 TM4SF1P30408 202 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 USP17L24Q0WX57 530 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 GRM4Q14833 912 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 USP17L6PQ6QN14 398 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 CACNA2D4Q7Z3S7 1137 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 SPATA20Q8TB22 786 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 PNKPQ96T60 521 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 ZC3H12CQ9C0D7 883 aaKnown RBP15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 DNAJC5Q9H3Z4 198 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 PCDHAC2Q9Y5I4 1007 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 SEMA3EO15041 775 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 TOM1O60784 492 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 N4BP1O75113 896 aaKnown RBP15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 GNA11P29992 359 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 PDE4CQ08493 712 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 MB21D1Q8N884 522 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 NUDT12Q9BQG2 462 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 ZNF287Q9HBT7 754 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 CDC23Q9UJX2 597 aa15.28■□□□□ 0.04
PRPF40B-209ENST00000548825 APBA1Q02410 837 aa15.27■□□□□ 0.04
PRPF40B-209ENST00000548825 CCDC42Q96M95 316 aa15.27■□□□□ 0.04
PRPF40B-209ENST00000548825 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.27■□□□□ 0.04
PRPF40B-209ENST00000548825 USP40Q9NVE5 1235 aa15.27■□□□□ 0.04
PRPF40B-209ENST00000548825 POLLQ9UGP5 575 aa15.27■□□□□ 0.04
PRPF40B-209ENST00000548825 SLC37A4O43826 429 aa15.27■□□□□ 0.03
PRPF40B-209ENST00000548825 RCAN1P53805 252 aa15.27■□□□□ 0.03
PRPF40B-209ENST00000548825 SRGAP1Q7Z6B7 1085 aa15.27■□□□□ 0.03
PRPF40B-209ENST00000548825 SPICE1Q8N0Z3 855 aa15.27■□□□□ 0.03
PRPF40B-209ENST00000548825 GPR161Q8N6U8 529 aaKnown RBP15.27■□□□□ 0.03
PRPF40B-209ENST00000548825 ABCB6Q9NP58 842 aa15.27■□□□□ 0.03
PRPF40B-209ENST00000548825 MYH3P11055 1940 aa15.27■□□□□ 0.03
PRPF40B-209ENST00000548825 FLT1P17948 1338 aa15.27■□□□□ 0.03
PRPF40B-209ENST00000548825 H7C1D1 291 aa15.27■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms