RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 MKRN4PQ13434 485 aaPredicted RBP11.73□□□□□ -0.53
VPS53-202ENST00000389040 TPRNQ4KMQ1 711 aa11.73□□□□□ -0.53
VPS53-202ENST00000389040 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.73□□□□□ -0.53
VPS53-202ENST00000389040 TEX2Q8IWB9 1127 aa11.73□□□□□ -0.53
VPS53-202ENST00000389040 REPS2Q8NFH8 660 aa11.73□□□□□ -0.53
VPS53-202ENST00000389040 KIFC2Q96AC6 838 aa11.73□□□□□ -0.53
VPS53-202ENST00000389040 PPP1R9BQ96SB3 815 aa11.73□□□□□ -0.53
VPS53-202ENST00000389040 SPZ1Q9BXG8 430 aa11.73□□□□□ -0.53
VPS53-202ENST00000389040 SPATC1LQ9H0A9 340 aa11.73□□□□□ -0.53
VPS53-202ENST00000389040 RANBP17Q9H2T7 1088 aaKnown RBP11.73□□□□□ -0.53
VPS53-202ENST00000389040 RIOX1Q9H6W3 641 aa11.73□□□□□ -0.53
VPS53-202ENST00000389040 FBXO28Q9NVF7 368 aa11.73□□□□□ -0.53
VPS53-202ENST00000389040 CPA4Q9UI42 421 aa11.73□□□□□ -0.53
VPS53-202ENST00000389040 STAT3P40763 770 aa11.72□□□□□ -0.53
VPS53-202ENST00000389040 FCGRTP55899 365 aa11.72□□□□□ -0.53
VPS53-202ENST00000389040 PKN2Q16513 984 aaKnown RBP11.72□□□□□ -0.53
VPS53-202ENST00000389040 RIOX2Q8IUF8 465 aa11.72□□□□□ -0.53
VPS53-202ENST00000389040 CCAR1Q8IX12 1150 aaKnown RBP11.72□□□□□ -0.53
VPS53-202ENST00000389040 ABRAQ8N0Z2 381 aa11.72□□□□□ -0.53
VPS53-202ENST00000389040 NUP133Q8WUM0 1156 aa11.72□□□□□ -0.53
VPS53-202ENST00000389040 ZNF296Q8WUU4 475 aaPredicted RBP11.72□□□□□ -0.53
VPS53-202ENST00000389040 ATG4CQ96DT6 458 aa11.72□□□□□ -0.53
VPS53-202ENST00000389040 MTMR8Q96EF0 704 aa11.72□□□□□ -0.53
VPS53-202ENST00000389040 SPATA32Q96LK8 384 aa11.72□□□□□ -0.53
VPS53-202ENST00000389040 R3HDMLQ9H3Y0 253 aa11.72□□□□□ -0.53
VPS53-202ENST00000389040 SENP2Q9HC62 589 aa11.72□□□□□ -0.53
VPS53-202ENST00000389040 GPCPD1Q9NPB8 672 aa11.72□□□□□ -0.53
VPS53-202ENST00000389040 FBXO40Q9UH90 709 aa11.72□□□□□ -0.53
VPS53-202ENST00000389040 ZNF214Q9UL59 606 aaPredicted RBP11.72□□□□□ -0.53
VPS53-202ENST00000389040 ICAM1P05362 532 aa11.72□□□□□ -0.53
VPS53-202ENST00000389040 PLCB2Q00722 1185 aa11.72□□□□□ -0.53
VPS53-202ENST00000389040 TMEM132BQ14DG7 1078 aa11.72□□□□□ -0.53
VPS53-202ENST00000389040 CHST13Q8NET6 341 aa11.72□□□□□ -0.53
VPS53-202ENST00000389040 LEO1Q8WVC0 666 aaPredicted RBP11.72□□□□□ -0.53
VPS53-202ENST00000389040 HPS5Q9UPZ3 1129 aa11.72□□□□□ -0.53
VPS53-202ENST00000389040 FRMPD2Q68DX3 1309 aaPredicted RBP11.71□□□□□ -0.53
VPS53-202ENST00000389040 CNMDO75829 334 aa11.71□□□□□ -0.53
VPS53-202ENST00000389040 METAP2P50579 478 aaKnown RBP eCLIP11.71□□□□□ -0.53
VPS53-202ENST00000389040 RTN1Q16799 776 aa11.71□□□□□ -0.53
VPS53-202ENST00000389040 ADGRF4Q8IZF3 695 aa11.71□□□□□ -0.53
VPS53-202ENST00000389040 SAMD3Q8N6K7 520 aa11.71□□□□□ -0.53
VPS53-202ENST00000389040 COA7Q96BR5 231 aa11.71□□□□□ -0.53
VPS53-202ENST00000389040 TRIM44Q96DX7 344 aaPredicted RBP11.71□□□□□ -0.53
VPS53-202ENST00000389040 TXNRD2Q9NNW7 524 aa11.71□□□□□ -0.53
VPS53-202ENST00000389040 BTBD7Q9P203 1132 aa11.71□□□□□ -0.53
VPS53-202ENST00000389040 TFIP11Q9UBB9 837 aaKnown RBP11.71□□□□□ -0.53
VPS53-202ENST00000389040 MTMR7Q9Y216 660 aa11.71□□□□□ -0.53
VPS53-202ENST00000389040 MYH15Q9Y2K3 1946 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 ZBTB5O15062 677 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 GOLGA8HP0CJ92 632 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 FDPSP14324 419 aaKnown RBP11.7□□□□□ -0.54
VPS53-202ENST00000389040 LBX1P52954 281 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 FOSBP53539 338 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 TTBK2Q6IQ55 1244 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 CPLX2Q6PUV4 134 aaKnown RBP11.7□□□□□ -0.54
VPS53-202ENST00000389040 POTEEQ6S8J3 1075 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 TMTC3Q6ZXV5 915 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 MICU3Q86XE3 530 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 STAG2Q8N3U4 1231 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 SOCS4Q8WXH5 440 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 PAGR1Q9BTK6 254 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 MOV10L1Q9BXT6 1211 aaKnown RBP11.7□□□□□ -0.54
VPS53-202ENST00000389040 CFAP45Q9UL16 551 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 PNMA6FA0A0J9YX94 578 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 GOLGA6L4A6NEF3 574 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 GOLGA8AA7E2F4 631 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 SLC16A2P36021 539 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 PSMC4P43686 418 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 Q3C1V9 767 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 FAM177A1Q8N128 213 aaPredicted RBP11.7□□□□□ -0.54
VPS53-202ENST00000389040 RNF214Q8ND24 703 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 RGS22Q8NE09 1264 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 RRP36Q96EU6 259 aaKnown RBP11.7□□□□□ -0.54
VPS53-202ENST00000389040 UBA5Q9GZZ9 404 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 JMJD4Q9H9V9 463 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 SLC5A4Q9NY91 659 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 MAP3K20Q9NYL2 800 aaKnown RBP11.7□□□□□ -0.54
VPS53-202ENST00000389040 IVNS1ABPQ9Y6Y0 642 aa11.7□□□□□ -0.54
VPS53-202ENST00000389040 MYH4Q9Y623 1939 aa11.69□□□□□ -0.54
VPS53-202ENST00000389040 hCG_1984214I3L0E3 225 aa11.69□□□□□ -0.54
VPS53-202ENST00000389040 CPLX1O14810 134 aa11.69□□□□□ -0.54
VPS53-202ENST00000389040 PPFIA3O75145 1194 aa11.69□□□□□ -0.54
VPS53-202ENST00000389040 CDKL5O76039 1030 aa11.69□□□□□ -0.54
VPS53-202ENST00000389040 PLS1Q14651 629 aa11.69□□□□□ -0.54
VPS53-202ENST00000389040 SNRNP48Q6IEG0 339 aaKnown RBP11.69□□□□□ -0.54
VPS53-202ENST00000389040 TRMT44Q8IYL2 757 aaKnown RBP11.69□□□□□ -0.54
VPS53-202ENST00000389040 ZNF713Q8N859 430 aaPredicted RBP11.69□□□□□ -0.54
VPS53-202ENST00000389040 AMNQ9BXJ7 453 aa11.69□□□□□ -0.54
VPS53-202ENST00000389040 EFCC1Q9HA90 598 aa11.69□□□□□ -0.54
VPS53-202ENST00000389040 SEC63Q9UGP8 760 aaKnown RBP11.69□□□□□ -0.54
VPS53-202ENST00000389040 ZNF536O15090 1300 aa11.69□□□□□ -0.54
VPS53-202ENST00000389040 SLC15A5A6NIM6 579 aa11.68□□□□□ -0.54
VPS53-202ENST00000389040 TNPO2O14787 897 aaKnown RBP11.68□□□□□ -0.54
VPS53-202ENST00000389040 FMNL1O95466 1100 aaPredicted RBP11.68□□□□□ -0.54
VPS53-202ENST00000389040 XRCC5P13010 732 aaKnown RBP11.68□□□□□ -0.54
VPS53-202ENST00000389040 ERCC3P19447 782 aa11.68□□□□□ -0.54
VPS53-202ENST00000389040 ADD1P35611 737 aaKnown RBP11.68□□□□□ -0.54
VPS53-202ENST00000389040 PLEKHH3Q7Z736 793 aa11.68□□□□□ -0.54
VPS53-202ENST00000389040 CTU1Q7Z7A3 348 aaKnown RBP11.68□□□□□ -0.54
VPS53-202ENST00000389040 RAB11FIP4Q86YS3 637 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms