RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 DPH6Q7L8W6 267 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 ADGRA1Q86SQ6 560 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 USP48Q86UV5 1035 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 TICAM2Q86XR7 235 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 TTLL11Q8NHH1 800 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 EAF1Q96JC9 268 aaPredicted RBP2.82□□□□□ -1.96
VPS54-202ENST00000354504 MUC3BQ9H195 1237 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 IGFLR1Q9H665 355 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 BTG4Q9NY30 223 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 RGS17Q9UGC6 210 aaPredicted RBP2.82□□□□□ -1.96
VPS54-202ENST00000354504 PRKAG2Q9UGJ0 569 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 GGT7Q9UJ14 662 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 EPB41L3Q9Y2J2 1087 aaPredicted RBP2.82□□□□□ -1.96
VPS54-202ENST00000354504 FPGT-TNNI3KV9GXZ4 949 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 KCNQ2O43526 872 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 GNAI3P08754 354 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 FGRP09769 529 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 ATF3P18847 181 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 PAK2Q13177 524 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 VPS72Q15906 364 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 PLA2G4EQ3MJ16 856 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 VPS53Q5VIR6 699 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 SCARA3Q6AZY7 606 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 TXNDC11Q6PKC3 985 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 RBM43Q6ZSC3 357 aaKnown RBP2.82□□□□□ -1.96
VPS54-202ENST00000354504 SNX29Q8TEQ0 813 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 BHMTQ93088 406 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 RNF34Q969K3 372 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 BCL11AQ9H165 835 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 ZBTB1Q9Y2K1 713 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 PCDHB5Q9Y5E4 795 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 ZMYM6O95789 1325 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 CNTNAP4Q9C0A0 1308 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 PLXNB2O15031 1838 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 K7ELQ4 463 aaPredicted RBP2.82□□□□□ -1.96
VPS54-202ENST00000354504 M0R2C6 588 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 PCCAP05165 728 aaPredicted RBP2.82□□□□□ -1.96
VPS54-202ENST00000354504 EPXP11678 715 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 CES1P23141 567 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 MCM4P33991 863 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 TFCP2Q12800 502 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 TCIRG1Q13488 830 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 ALG1LQ6GMV1 187 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 PDE12Q6L8Q7 609 aaKnown RBP2.82□□□□□ -1.96
VPS54-202ENST00000354504 CEP120Q8N960 986 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 SMARCC2Q8TAQ2 1214 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 GRIN3AQ8TCU5 1115 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 MICAL1Q8TDZ2 1067 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 SREK1Q8WXA9 508 aaKnown RBP2.82□□□□□ -1.96
VPS54-202ENST00000354504 JARID2Q92833 1246 aaPredicted RBP2.82□□□□□ -1.96
VPS54-202ENST00000354504 PDLIM2Q96JY6 352 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 SEC62Q99442 399 aaKnown RBP2.82□□□□□ -1.96
VPS54-202ENST00000354504 OXCT2Q9BYC2 517 aaPredicted RBP2.82□□□□□ -1.96
VPS54-202ENST00000354504 TM6SF1Q9BZW5 370 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 RASSF4Q9H2L5 321 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 IL1RAPL2Q9NP60 686 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 SPG7Q9UQ90 795 aa2.82□□□□□ -1.96
VPS54-202ENST00000354504 ERVV-1B6SEH8 477 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 EIF4EBP3O60516 100 aaPredicted RBP2.81□□□□□ -1.96
VPS54-202ENST00000354504 FDPSP14324 419 aaKnown RBP2.81□□□□□ -1.96
VPS54-202ENST00000354504 GARTP22102 1010 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 CDC25BP30305 580 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 ADORA1P30542 326 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 ETFBP38117 255 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 MCAMP43121 646 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 NOVP48745 357 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 BNC2Q6ZN30 1099 aaPredicted RBP2.81□□□□□ -1.96
VPS54-202ENST00000354504 DNAJC10Q8IXB1 793 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 WHAMMQ8TF30 809 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 ARMC5Q96C12 935 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 BTBD6Q96KE9 485 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 FMNL2Q96PY5 1086 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 POP1Q99575 1024 aaKnown RBP2.81□□□□□ -1.96
VPS54-202ENST00000354504 SPOCK3Q9BQ16 436 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 DZANK1Q9NVP4 752 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 TPCN1Q9ULQ1 816 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 PDCD11Q14690 1871 aaKnown RBP2.81□□□□□ -1.96
VPS54-202ENST00000354504 MKI67P46013 3256 aaKnown RBP2.81□□□□□ -1.96
VPS54-202ENST00000354504 POLR2AP24928 1970 aaKnown RBP2.81□□□□□ -1.96
VPS54-202ENST00000354504 CCDC171Q6TFL3 1326 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 ADAMTS3O15072 1205 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 SRGAP3O43295 1099 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 MAP3K6O95382 1288 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 CTSBP07858 339 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 CPA1P15085 419 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 TATP17735 454 aaPredicted RBP2.81□□□□□ -1.96
VPS54-202ENST00000354504 GTF2F1P35269 517 aaKnown RBP eCLIP2.81□□□□□ -1.962e-6■■■■□ 22
VPS54-202ENST00000354504 BAG6P46379 1132 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 PCSK7Q16549 785 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 ZMYM1Q5SVZ6 1142 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 GALNT12Q8IXK2 581 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 ZBTB38Q8NAP3 1195 aaPredicted RBP2.81□□□□□ -1.96
VPS54-202ENST00000354504 CCDC191Q8NCU4 936 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 KIF1BPQ96EK5 621 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 TMX3Q96JJ7 454 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 MYD88Q99836 296 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 TANGO6Q9C0B7 1094 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 EPB41L4AQ9HCS5 686 aaPredicted RBP2.81□□□□□ -1.96
VPS54-202ENST00000354504 PPT2Q9UMR5 302 aa2.81□□□□□ -1.96
VPS54-202ENST00000354504 MAST3O60307 1309 aa2.81□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 214.4 ms