RNA–Protein interactions for RNA: ENST00000263630.12

CCDC88A-201, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,667 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-201ENST00000263630 PIK3AP1Q6ZUJ8 805 aa15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 RYBPQ8N488 228 aaPredicted RBP15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 U2AF1L4Q8WU68 220 aaKnown RBP15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 WARS2Q9UGM6 360 aaKnown RBP15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 TRIM33Q9UPN9 1127 aa15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 SESTD1Q86VW0 696 aa15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 MAPK8IP1Q9UQF2 711 aa15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 XPOTO43592 962 aaKnown RBP15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 IFT88Q13099 833 aa15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 GNPTABQ3T906 1256 aa15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 PAMP19021 973 aa15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 PSMA3P25788 255 aa15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 MRPS26Q9BYN8 205 aaKnown RBP15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 POC1B-GALNT4F8VUJ3 575 aa15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 LIG4P49917 911 aa15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 BPIFB4P59827 614 aa15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 KAZNQ674X7 775 aa15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 N4BP2L2Q92802 583 aaPredicted RBP15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 JRKLQ9Y4A0 524 aa15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 RALGAPBQ86X10 1494 aa15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 ABCD1P33897 745 aa15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 POLKQ9UBT6 870 aa15.13■□□□□ 0.01
CCDC88A-201ENST00000263630 SPAG7O75391 227 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 ABCB4P21439 1286 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 CAPRIN1Q14444 709 aaKnown RBP15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 AOC3Q16853 763 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 SLF1Q9BQI6 1058 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 SLC9A1P19634 815 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 KIF19Q2TAC6 998 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 MAPK13O15264 365 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 PYGMP11217 842 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 TMOD1P28289 359 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 ELMSAN1Q6PJG2 1045 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 ACRBPQ8NEB7 543 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 NCLNQ969V3 563 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 DONSONQ9NYP3 566 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 NCAPD3P42695 1498 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 KDM2BQ8NHM5 1336 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 ARHGEF37A1IGU5 675 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 ALDH1L1O75891 902 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 RBM17Q96I25 401 aaKnown RBP15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 NIP7Q9Y221 180 aaKnown RBP eCLIP15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 L3MBTL1Q9Y468 752 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 ATP8B3O60423 1300 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 FRA10AC1Q70Z53 315 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 SESN1Q9Y6P5 492 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 ARHGAP10A1A4S6 786 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 DCTN3O75935 186 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 HIF1AQ16665 826 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 ZNF280CQ8ND82 737 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 TCP11Q8WWU5 503 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 STRIP2Q9ULQ0 834 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 IBTKQ9P2D0 1353 aaPredicted RBP15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 SRGAP2CP0DJJ0 459 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 PPARDQ03181 441 aa15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 YWHAHQ04917 246 aaPredicted RBP15.12■□□□□ 0.01
CCDC88A-201ENST00000263630 MEIS1O00470 390 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 ORC4O43929 436 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 SLC4A1P02730 911 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 TAC1P20366 129 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 USHBP1Q8N6Y0 703 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 KIF2CQ99661 725 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 TRIM67Q6ZTA4 783 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 CHST3Q7LGC8 479 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 TEX11Q8IYF3 940 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 OR8K1Q8NGG5 319 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 MTX1Q13505 466 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 SLFN12Q8IYM2 578 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 HSPA1AP0DMV8 641 aaKnown RBP15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 HSPA1BP0DMV9 641 aaKnown RBP15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 RNF169Q8NCN4 708 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 LRWD1Q9UFC0 647 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 ATP11BQ9Y2G3 1177 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 DDX39AO00148 427 aaKnown RBP15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 NCF2P19878 526 aaPredicted RBP15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 GRAMD1BQ3KR37 738 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 DNAAF3Q8N9W5 541 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 H0Y626 953 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 TRIM16O95361 564 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 PIK3CAP42336 1068 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 TRPC1P48995 793 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 SUGT1Q9Y2Z0 365 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 ATP5HO75947 161 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 IGBP1P78318 339 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 MIGA1Q8NAN2 632 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 KLC2Q9H0B6 622 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 DDX28Q9NUL7 540 aaKnown RBP15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 ANGEL1Q9UNK9 670 aaKnown RBP15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 WDR64B1ANS9 1081 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 TCF3P15923 654 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 CEP85Q6P2H3 762 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 TCEANC2Q96MN5 208 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 TBC1D7Q9P0N9 293 aa15.11■□□□□ 0.01
CCDC88A-201ENST00000263630 TLR3O15455 904 aaKnown RBP15.1■□□□□ 0.01
CCDC88A-201ENST00000263630 DAB1O75553 588 aa15.1■□□□□ 0.01
CCDC88A-201ENST00000263630 FBXO2Q9UK22 296 aaPredicted RBP15.1■□□□□ 0.01
CCDC88A-201ENST00000263630 IQSEC3Q9UPP2 1182 aaPredicted RBP15.1■□□□□ 0.01
CCDC88A-201ENST00000263630 FAM207AQ9NSI2 230 aaPredicted RBP15.1■□□□□ 0.01
CCDC88A-201ENST00000263630 CAPN12Q6ZSI9 719 aa15.1■□□□□ 0.01
CCDC88A-201ENST00000263630 CASKIN1Q8WXD9 1431 aa15.1■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms