RNA–Protein interactions for RNA: YML040W

YML040W, Transcript of Retrotransposon TYA Gag gene co-transcribed with TYB Pol, yeast

Gene YML040W, Length 1,323 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
YML040W	YML040W	BNI5	P53890	448 aa	Known RBP	4.65	□□□□□ -1.67
YML040W	YML040W	RMT2	Q03305	412 aa		4.65	□□□□□ -1.67
YML040W	YML040W	RBS1	Q05672	457 aa	Known RBP	4.65	□□□□□ -1.67
YML040W	YML040W	TEN1	Q07921	160 aa		4.65	□□□□□ -1.67
YML040W	YML040W	MCH4	Q08268	501 aa		4.65	□□□□□ -1.67
YML040W	YML040W	APL4	Q12028	832 aa		4.65	□□□□□ -1.67
YML040W	YML040W	APE1	P14904	514 aa		4.64	□□□□□ -1.67
YML040W	YML040W	CLB3	P24870	427 aa		4.64	□□□□□ -1.67
YML040W	YML040W	YCR006C	P25350	157 aa		4.64	□□□□□ -1.67
YML040W	YML040W	BOS1	P25385	244 aa		4.64	□□□□□ -1.67
YML040W	YML040W	URA7	P28274	579 aa	Known RBP	4.64	□□□□□ -1.67
YML040W	YML040W	MTR2	P34232	184 aa	Known RBP	4.64	□□□□□ -1.67
YML040W	YML040W	GCS1	P35197	352 aa		4.64	□□□□□ -1.67
YML040W	YML040W	STB6	P36085	766 aa		4.64	□□□□□ -1.67
YML040W	YML040W	FLO10	P36170	1169 aa		4.64	□□□□□ -1.67
YML040W	YML040W	HXT14	P42833	540 aa		4.64	□□□□□ -1.67
YML040W	YML040W	BPL1	P48445	690 aa	Predicted RBP	4.64	□□□□□ -1.67
YML040W	YML040W	YNL144C	P53907	740 aa		4.64	□□□□□ -1.67
YML040W	YML040W	SNU56	Q03782	492 aa	Known RBP	4.64	□□□□□ -1.67
YML040W	YML040W	ARX1	Q03862	593 aa	Known RBP	4.64	□□□□□ -1.67
YML040W	YML040W	TAP42	Q04372	366 aa		4.64	□□□□□ -1.67
YML040W	YML040W	ERB1	Q04660	807 aa	Known RBP	4.64	□□□□□ -1.67
YML040W	YML040W	SLK19	Q08581	821 aa	Known RBP	4.64	□□□□□ -1.67
YML040W	YML040W	SPE2	P21182	396 aa		4.63	□□□□□ -1.67
YML040W	YML040W	MSS51	P32335	436 aa		4.63	□□□□□ -1.67
YML040W	YML040W	MIA40	P36046	403 aa		4.63	□□□□□ -1.67
YML040W	YML040W	ANS1	P38832	159 aa		4.63	□□□□□ -1.67
YML040W	YML040W	EMI2	Q04409	500 aa	Known RBP	4.63	□□□□□ -1.67
YML040W	YML040W	COQ9	Q05779	260 aa		4.63	□□□□□ -1.67
YML040W	YML040W	OSW1	Q08692	278 aa		4.63	□□□□□ -1.67
YML040W	YML040W	FRE3	Q08905	711 aa		4.63	□□□□□ -1.67
YML040W	YML040W	YLR049C	Q12110	428 aa		4.63	□□□□□ -1.67
YML040W	YML040W	FRE7	Q12333	620 aa		4.63	□□□□□ -1.67
YML040W	YML040W	NUP1	P20676	1076 aa		4.62	□□□□□ -1.67
YML040W	YML040W	MBR1	P23493	339 aa		4.62	□□□□□ -1.67
YML040W	YML040W	YCR051W	P25631	222 aa		4.62	□□□□□ -1.67
YML040W	YML040W	GAC1	P28006	793 aa		4.62	□□□□□ -1.67
YML040W	YML040W	OTU2	P38747	307 aa	Known RBP	4.62	□□□□□ -1.67
YML040W	YML040W	STB2	P46679	850 aa		4.62	□□□□□ -1.67
YML040W	YML040W	DLD2	P46681	530 aa	Known RBP	4.62	□□□□□ -1.67
YML040W	YML040W	TPO3	Q06451	622 aa		4.62	□□□□□ -1.67
YML040W	YML040W	NCE102	Q12207	173 aa	RIP-Chip data	4.62	□□□□□ -1.67	not detected
YML040W	YML040W	YDL007C-A	Q2V2Q0	85 aa		4.62	□□□□□ -1.67
YML040W	YML040W	BNR1	P40450	1375 aa		4.61	□□□□□ -1.67
YML040W	YML040W	PUT2	P07275	575 aa		4.61	□□□□□ -1.67
YML040W	YML040W	APN1	P22936	367 aa		4.61	□□□□□ -1.67
YML040W	YML040W	ILV6	P25605	309 aa	Known RBP	4.61	□□□□□ -1.67
YML040W	YML040W	HXT3	P32466	567 aa	Known RBP	4.61	□□□□□ -1.67
YML040W	YML040W	SWI3	P32591	825 aa		4.61	□□□□□ -1.67
YML040W	YML040W	RPL32	P38061	130 aa	Known RBP	4.61	□□□□□ -1.67
YML040W	YML040W	ICS2	P38284	255 aa		4.61	□□□□□ -1.67
YML040W	YML040W	MSR1	P38714	643 aa		4.61	□□□□□ -1.67
YML040W	YML040W	DBP8	P38719	431 aa		4.61	□□□□□ -1.67
YML040W	YML040W	PTR3	P43606	678 aa		4.61	□□□□□ -1.67
YML040W	YML040W	AIM22	P47051	409 aa		4.61	□□□□□ -1.67
YML040W	YML040W	PYK2	P52489	506 aa	Known RBP	4.61	□□□□□ -1.67
YML040W	YML040W	RCF1	Q03713	159 aa		4.61	□□□□□ -1.67
YML040W	YML040W	ATG26	Q06321	1198 aa		4.61	□□□□□ -1.67
YML040W	YML040W	PFA4	Q12006	378 aa		4.61	□□□□□ -1.67
YML040W	YML040W	ISA2	Q12425	185 aa		4.61	□□□□□ -1.67
YML040W	YML040W	YRF1-4	O13559	1382 aa		4.6	□□□□□ -1.67
YML040W	YML040W	GAL4	P04386	881 aa		4.6	□□□□□ -1.67
YML040W	YML040W	TUB1	P09733	447 aa	Known RBP	4.6	□□□□□ -1.67
YML040W	YML040W	CLB1	P24868	471 aa		4.6	□□□□□ -1.67
YML040W	YML040W	YKL100C	P34248	587 aa		4.6	□□□□□ -1.67
YML040W	YML040W	UBA4	P38820	440 aa		4.6	□□□□□ -1.67
YML040W	YML040W	APE4	P38821	490 aa		4.6	□□□□□ -1.67
YML040W	YML040W	RIX1	P38883	763 aa	Predicted RBP	4.6	□□□□□ -1.67
YML040W	YML040W	CIN4	P39110	191 aa		4.6	□□□□□ -1.67
YML040W	YML040W	HXT9	P40885	567 aa		4.6	□□□□□ -1.67
YML040W	YML040W	SSU1	P41930	458 aa		4.6	□□□□□ -1.67
YML040W	YML040W	IRC7	P43623	340 aa		4.6	□□□□□ -1.67
YML040W	YML040W	RSM23	Q01163	450 aa		4.6	□□□□□ -1.67
YML040W	YML040W	SWF1	Q04629	336 aa		4.6	□□□□□ -1.67
YML040W	YML040W	AIM32	Q04689	311 aa		4.6	□□□□□ -1.67
YML040W	YML040W	SOV1	Q04748	898 aa		4.6	□□□□□ -1.67
YML040W	YML040W	ROY1	Q04847	553 aa		4.6	□□□□□ -1.67
YML040W	YML040W	ARG81	P05085	880 aa		4.59	□□□□□ -1.67
YML040W	YML040W	PEP4	P07267	405 aa	Known RBP	4.59	□□□□□ -1.67
YML040W	YML040W	PRP2	P20095	876 aa	Predicted RBP	4.59	□□□□□ -1.67
YML040W	YML040W	CDC60	P26637	1090 aa	Known RBP	4.59	□□□□□ -1.67
YML040W	YML040W	RML2	P32611	393 aa		4.59	□□□□□ -1.67
YML040W	YML040W	PPZ2	P33329	710 aa		4.59	□□□□□ -1.67
YML040W	YML040W	LEU5	P38702	357 aa		4.59	□□□□□ -1.67
YML040W	YML040W	TCB2	P48231	1178 aa		4.59	□□□□□ -1.67
YML040W	YML040W	VPS9	P54787	451 aa		4.59	□□□□□ -1.67
YML040W	YML040W	SLG1	P54867	378 aa		4.59	□□□□□ -1.67
YML040W	YML040W	YMR160W	Q03823	816 aa		4.59	□□□□□ -1.67
YML040W	YML040W	PDS5	Q04264	1277 aa		4.59	□□□□□ -1.67
YML040W	YML040W	VTA1	Q06263	330 aa		4.59	□□□□□ -1.67
YML040W	YML040W	ECM30	Q06673	1274 aa		4.59	□□□□□ -1.67
YML040W	YML040W	CBP1	P07252	654 aa		4.58	□□□□□ -1.68
YML040W	YML040W	CLC1	P17891	233 aa		4.58	□□□□□ -1.68
YML040W	YML040W	ERV1	P27882	189 aa		4.58	□□□□□ -1.68
YML040W	YML040W	PAP1	P29468	568 aa	Known RBP	4.58	□□□□□ -1.68
YML040W	YML040W	YME1	P32795	747 aa		4.58	□□□□□ -1.68
YML040W	YML040W	YIL060W	P40519	144 aa		4.58	□□□□□ -1.68
YML040W	YML040W	ULP2	P40537	1034 aa	Predicted RBP	4.58	□□□□□ -1.68
YML040W	YML040W	NMD5	P46970	1048 aa		4.58	□□□□□ -1.68
YML040W	YML040W	DRN1	P53255	507 aa	Known RBP	4.58	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 12.8 ms