RNA–Protein interactions for RNA: YKR036C

CAF4, Transcript of WD40 repeat-containing protein associated with the CCR4-NOT complex, yeast

Gene CAF4, Length 1,932 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CAF4	YKR036C	STB4	P50104	949 aa		4.82	□□□□□ -1.64
CAF4	YKR036C	PEX8	P53248	589 aa		4.82	□□□□□ -1.64
CAF4	YKR036C	GPI1	P53306	609 aa		4.82	□□□□□ -1.64
CAF4	YKR036C	YNL034W	P53963	612 aa		4.82	□□□□□ -1.64
CAF4	YKR036C	YNL018C	P53976	612 aa		4.82	□□□□□ -1.64
CAF4	YKR036C	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.82	□□□□□ -1.64	not detected
CAF4	YKR036C	MEH1	Q02205	184 aa		4.82	□□□□□ -1.64
CAF4	YKR036C	INA17	Q02888	182 aa		4.82	□□□□□ -1.64
CAF4	YKR036C	CSM3	Q04659	317 aa		4.82	□□□□□ -1.64
CAF4	YKR036C	NBA1	Q08229	501 aa	Known RBP	4.82	□□□□□ -1.64
CAF4	YKR036C	SAM4	Q08985	325 aa	Known RBP	4.82	□□□□□ -1.64
CAF4	YKR036C	YDR018C	Q12185	396 aa		4.82	□□□□□ -1.64
CAF4	YKR036C	GAL10	P04397	699 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	CDC33	P07260	213 aa	Known RBP	4.81	□□□□□ -1.64
CAF4	YKR036C	BCY1	P07278	416 aa	Known RBP	4.81	□□□□□ -1.64
CAF4	YKR036C	SPE1	P08432	466 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	DSF1	P0CX08	502 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	YNR073C	P0CX09	502 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	TIF1	P10081	395 aa	Known RBP	4.81	□□□□□ -1.64
CAF4	YKR036C	ESS1	P22696	170 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	DBP2	P24783	546 aa	Known RBP	4.81	□□□□□ -1.64
CAF4	YKR036C	CNB1	P25296	175 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	PMT2	P31382	759 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	NGG1	P32494	702 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	SEC61	P32915	480 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	TOM20	P35180	183 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	YBR137W	P38276	179 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	PHO89	P38361	574 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	RRF1	P38771	230 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	BZZ1	P38822	633 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	ORC6	P38826	435 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	SEC31	P38968	1273 aa	Known RBP	4.81	□□□□□ -1.64
CAF4	YKR036C	MSS4	P38994	779 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	SWD1	P39706	426 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	PHM8	P40025	321 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	RPT2	P40327	437 aa	Known RBP	4.81	□□□□□ -1.64
CAF4	YKR036C	YIL077C	P40508	320 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	LCB2	P40970	561 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	REF2	P42073	533 aa	Predicted RBP	4.81	□□□□□ -1.64
CAF4	YKR036C	RGD2	P43556	714 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	IRC18	P47056	224 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	ATH1	P48016	1211 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	SAP4	P53036	818 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	SLD3	P53135	668 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	CLD1	P53264	445 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	YGR273C	P53329	174 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	ARE2	P53629	642 aa	Known RBP	4.81	□□□□□ -1.64
CAF4	YKR036C	RCF2	P53721	224 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	NOG2	P53742	486 aa	Known RBP	4.81	□□□□□ -1.64
CAF4	YKR036C	RPL6A	Q02326	176 aa	Known RBP	4.81	□□□□□ -1.64
CAF4	YKR036C	ARP10	Q04549	284 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	PRM6	Q04705	352 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	DBP9	Q06218	594 aa	Known RBP	4.81	□□□□□ -1.64
CAF4	YKR036C	EMG1	Q06287	252 aa	Known RBP	4.81	□□□□□ -1.64
CAF4	YKR036C	DTD1	Q07648	150 aa	Known RBP	4.81	□□□□□ -1.64
CAF4	YKR036C	YOR352W	Q08816	343 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	PGC1	Q08959	321 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	APC9	Q12107	265 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	ATP14	Q12349	124 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	YDL206W	Q12424	762 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	AVL9	Q12500	764 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	YIL002W-A	Q3E7Z5	69 aa		4.81	□□□□□ -1.64
CAF4	YKR036C	PFK1	P16861	987 aa	Known RBP	4.8	□□□□□ -1.64
CAF4	YKR036C	RVS161	P25343	265 aa	Known RBP	4.8	□□□□□ -1.64
CAF4	YKR036C	CAM1	P29547	415 aa	Known RBP	4.8	□□□□□ -1.64
CAF4	YKR036C	SEC1	P30619	724 aa	Known RBP	4.8	□□□□□ -1.64
CAF4	YKR036C	PGM1	P33401	570 aa	Known RBP	4.8	□□□□□ -1.64
CAF4	YKR036C	MIA40	P36046	403 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	YBR241C	P38142	488 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	FHL1	P39521	936 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	GEM1	P39722	662 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	ZRG8	P40021	1076 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	YIL054W	P40524	105 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	YKE4	P40544	346 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	MNN5	P46982	586 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	ALY2	P47029	1046 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	CPR8	P53728	308 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	RPN9	Q04062	393 aa	Known RBP	4.8	□□□□□ -1.64
CAF4	YKR036C	MUS81	Q04149	632 aa	Predicted RBP	4.8	□□□□□ -1.64
CAF4	YKR036C	YLR455W	Q06188	304 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	GMC2	Q06201	188 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	FEX2	Q08991	375 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	SMF3	Q12078	473 aa	Predicted RBP	4.8	□□□□□ -1.64
CAF4	YKR036C	HSH49	Q99181	213 aa	Predicted RBP	4.8	□□□□□ -1.64
CAF4	YKR036C	PHO4	P07270	312 aa	Known RBP	4.8	□□□□□ -1.64
CAF4	YKR036C	MSS18	P08593	268 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	TRM1	P15565	570 aa	Known RBP	4.8	□□□□□ -1.64
CAF4	YKR036C	EST1	P17214	699 aa	Predicted RBP	4.8	□□□□□ -1.64
CAF4	YKR036C	UGA1	P17649	471 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	ATG22	P25568	528 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	AEP1	P32493	518 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	APN2	P38207	520 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	PCA1	P38360	1216 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	CYC2	P38909	366 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	GAA1	P39012	614 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	RGA1	P39083	1007 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	SPF1	P39986	1215 aa	Known RBP	4.8	□□□□□ -1.64
CAF4	YKR036C	MIT1	P40002	666 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	SOK1	P40317	901 aa		4.8	□□□□□ -1.64
CAF4	YKR036C	TPN1	P53099	579 aa		4.8	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 16.8 ms