RNA–Protein interactions for RNA: YDR177W

UBC1, Transcript of Ubiquitin-conjugating enzyme, yeast

Gene UBC1, Length 648 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBC1	YDR177W	PLM2	Q04383	521 aa		4.81	□□□□□ -1.64
UBC1	YDR177W	YML053C	Q04978	212 aa		4.81	□□□□□ -1.64
UBC1	YDR177W	HEL2	Q05580	639 aa	Known RBP	4.81	□□□□□ -1.64
UBC1	YDR177W	FRE3	Q08905	711 aa		4.81	□□□□□ -1.64
UBC1	YDR177W	KEL3	Q08979	651 aa	Predicted RBP	4.81	□□□□□ -1.64
UBC1	YDR177W	LCB4	Q12246	624 aa		4.81	□□□□□ -1.64
UBC1	YDR177W	LAS17	Q12446	633 aa		4.81	□□□□□ -1.64
UBC1	YDR177W	ZPS1	Q12512	249 aa		4.81	□□□□□ -1.64
UBC1	YDR177W	LAM4	P38800	1345 aa		4.8	□□□□□ -1.64
UBC1	YDR177W	TY1B-A	O13527	1196 aa	Known RBP	4.8	□□□□□ -1.64
UBC1	YDR177W	TPK2	P06245	380 aa		4.8	□□□□□ -1.64
UBC1	YDR177W	HIP1	P06775	603 aa		4.8	□□□□□ -1.64
UBC1	YDR177W	PPR1	P07272	904 aa	Predicted RBP	4.8	□□□□□ -1.64
UBC1	YDR177W	YSP3	P25036	478 aa		4.8	□□□□□ -1.64
UBC1	YDR177W	PUP3	P25451	205 aa	Known RBP	4.8	□□□□□ -1.64
UBC1	YDR177W	POT1	P27796	417 aa	Known RBP RIP-Chip data	4.8	□□□□□ -1.64	not detected
UBC1	YDR177W	HXT3	P32466	567 aa	Known RBP	4.8	□□□□□ -1.64
UBC1	YDR177W	SNU114	P36048	1008 aa	Known RBP	4.8	□□□□□ -1.64
UBC1	YDR177W	EBP2	P36049	427 aa	Known RBP	4.8	□□□□□ -1.64
UBC1	YDR177W	TUL1	P36096	758 aa		4.8	□□□□□ -1.64
UBC1	YDR177W	SLM4	P38247	162 aa		4.8	□□□□□ -1.64
UBC1	YDR177W	MLC1	P53141	149 aa		4.8	□□□□□ -1.64
UBC1	YDR177W	VPS73	P53142	486 aa	Known RBP	4.8	□□□□□ -1.64
UBC1	YDR177W	AEP3	Q12089	606 aa		4.8	□□□□□ -1.64
UBC1	YDR177W	YDR061W	Q12298	539 aa		4.8	□□□□□ -1.64
UBC1	YDR177W	MDM20	Q12387	796 aa	Known RBP	4.8	□□□□□ -1.64
UBC1	YDR177W	YDL007C-A	Q2V2Q0	85 aa		4.8	□□□□□ -1.64
UBC1	YDR177W	SPT6	P23615	1451 aa	Known RBP	4.8	□□□□□ -1.64
UBC1	YDR177W	SPS4	P09937	338 aa		4.79	□□□□□ -1.64
UBC1	YDR177W	RPL1A	P0CX43	217 aa	Known RBP	4.79	□□□□□ -1.64
UBC1	YDR177W	RPL1B	P0CX44	217 aa	Known RBP	4.79	□□□□□ -1.64
UBC1	YDR177W	STE4	P18851	423 aa		4.79	□□□□□ -1.64
UBC1	YDR177W	SRP54	P20424	541 aa	Known RBP	4.79	□□□□□ -1.64
UBC1	YDR177W	RNR3	P21672	869 aa	Known RBP	4.79	□□□□□ -1.64
UBC1	YDR177W	DAL80	P26343	269 aa		4.79	□□□□□ -1.64
UBC1	YDR177W	SSE1	P32589	693 aa	Known RBP	4.79	□□□□□ -1.64
UBC1	YDR177W	RML2	P32611	393 aa		4.79	□□□□□ -1.64
UBC1	YDR177W	GDA1	P32621	518 aa		4.79	□□□□□ -1.64
UBC1	YDR177W	TOD6	P34219	525 aa		4.79	□□□□□ -1.64
UBC1	YDR177W	PIM1	P36775	1133 aa		4.79	□□□□□ -1.64
UBC1	YDR177W	SIF2	P38262	535 aa		4.79	□□□□□ -1.64
UBC1	YDR177W	CBR1	P38626	284 aa	Known RBP	4.79	□□□□□ -1.64
UBC1	YDR177W	MSR1	P38714	643 aa		4.79	□□□□□ -1.64
UBC1	YDR177W	CIN4	P39110	191 aa		4.79	□□□□□ -1.64
UBC1	YDR177W	NDC80	P40460	691 aa		4.79	□□□□□ -1.64
UBC1	YDR177W	APT1	P49435	187 aa	Known RBP	4.79	□□□□□ -1.64
UBC1	YDR177W	PPM1	Q04081	328 aa		4.79	□□□□□ -1.64
UBC1	YDR177W	MMR1	Q06324	491 aa		4.79	□□□□□ -1.64
UBC1	YDR177W	SLK19	Q08581	821 aa	Known RBP	4.79	□□□□□ -1.64
UBC1	YDR177W	RTC5	Q12108	567 aa	Known RBP	4.79	□□□□□ -1.64
UBC1	YDR177W	HER1	Q12276	1246 aa		4.79	□□□□□ -1.64
UBC1	YDR177W	TFB5	Q3E7C1	72 aa	Predicted RBP	4.79	□□□□□ -1.64
UBC1	YDR177W	NBL1	Q3E7Y6	73 aa		4.79	□□□□□ -1.64
UBC1	YDR177W	ISN1	Q99312	450 aa		4.79	□□□□□ -1.64
UBC1	YDR177W	MRP2	P10663	115 aa	Predicted RBP	4.78	□□□□□ -1.64
UBC1	YDR177W	IDH2	P28241	369 aa	Known RBP	4.78	□□□□□ -1.64
UBC1	YDR177W	YBL055C	P34220	418 aa	Predicted RBP	4.78	□□□□□ -1.64
UBC1	YDR177W	GLG1	P36143	616 aa		4.78	□□□□□ -1.64
UBC1	YDR177W	OMA1	P36163	345 aa		4.78	□□□□□ -1.64
UBC1	YDR177W	MNN2	P38069	597 aa		4.78	□□□□□ -1.64
UBC1	YDR177W	ARA1	P38115	344 aa		4.78	□□□□□ -1.64
UBC1	YDR177W	YPT10	P38146	199 aa		4.78	□□□□□ -1.64
UBC1	YDR177W	MMS4	P38257	691 aa		4.78	□□□□□ -1.64
UBC1	YDR177W	DBP8	P38719	431 aa		4.78	□□□□□ -1.64
UBC1	YDR177W	ELO1	P39540	310 aa		4.78	□□□□□ -1.64
UBC1	YDR177W	YIL089W	P40500	205 aa		4.78	□□□□□ -1.64
UBC1	YDR177W	MDE1	P47095	244 aa		4.78	□□□□□ -1.64
UBC1	YDR177W	COS5	P47187	383 aa		4.78	□□□□□ -1.64
UBC1	YDR177W	ARP5	P53946	755 aa		4.78	□□□□□ -1.64
UBC1	YDR177W	WAR1	Q03631	944 aa		4.78	□□□□□ -1.64
UBC1	YDR177W	COS7	Q07788	383 aa		4.78	□□□□□ -1.64
UBC1	YDR177W	AHA1	Q12449	350 aa	Known RBP	4.78	□□□□□ -1.64
UBC1	YDR177W	PMA1	P05030	918 aa	Known RBP	4.77	□□□□□ -1.65
UBC1	YDR177W	SPO7	P18410	259 aa		4.77	□□□□□ -1.65
UBC1	YDR177W	PRP6	P19735	899 aa	Predicted RBP	4.77	□□□□□ -1.65
UBC1	YDR177W	URA4	P20051	364 aa		4.77	□□□□□ -1.65
UBC1	YDR177W	GAS1	P22146	559 aa	Known RBP	4.77	□□□□□ -1.65
UBC1	YDR177W	RAD14	P28519	371 aa		4.77	□□□□□ -1.65
UBC1	YDR177W	HRR25	P29295	494 aa	Known RBP	4.77	□□□□□ -1.65
UBC1	YDR177W	TIF3	P34167	436 aa	Known RBP	4.77	□□□□□ -1.65
UBC1	YDR177W	GND1	P38720	489 aa	Known RBP	4.77	□□□□□ -1.65
UBC1	YDR177W	SAP1	P39955	897 aa	Known RBP	4.77	□□□□□ -1.65
UBC1	YDR177W	YJL107C	P42947	387 aa		4.77	□□□□□ -1.65
UBC1	YDR177W	EPL1	P43572	832 aa		4.77	□□□□□ -1.65
UBC1	YDR177W	NET1	P47035	1189 aa		4.77	□□□□□ -1.65
UBC1	YDR177W	CAF130	P53280	1122 aa	Predicted RBP	4.77	□□□□□ -1.65
UBC1	YDR177W	YNL092W	P53934	400 aa		4.77	□□□□□ -1.65
UBC1	YDR177W	YMR178W	Q03219	274 aa	Known RBP	4.77	□□□□□ -1.65
UBC1	YDR177W	YMR130W	Q04223	302 aa		4.77	□□□□□ -1.65
UBC1	YDR177W	SPH1	Q06160	661 aa		4.77	□□□□□ -1.65
UBC1	YDR177W	HBT1	Q07653	1046 aa	Known RBP	4.77	□□□□□ -1.65
UBC1	YDR177W	LEA1	Q08963	238 aa	Predicted RBP	4.77	□□□□□ -1.65
UBC1	YDR177W	BRR1	Q99177	341 aa	Predicted RBP	4.77	□□□□□ -1.65
UBC1	YDR177W	SPA2	P23201	1466 aa	Known RBP	4.76	□□□□□ -1.65
UBC1	YDR177W	YMR084W	A2P2R3	262 aa		4.76	□□□□□ -1.65
UBC1	YDR177W	PDE2	P06776	526 aa		4.76	□□□□□ -1.65
UBC1	YDR177W	MRP13	P12686	339 aa		4.76	□□□□□ -1.65
UBC1	YDR177W	PCT1	P13259	424 aa		4.76	□□□□□ -1.65
UBC1	YDR177W	PTC6	P25646	442 aa		4.76	□□□□□ -1.65
UBC1	YDR177W	NUP133	P36161	1157 aa		4.76	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 13.8 ms