RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 P3H4Q92791 437 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 AGXT2Q9BYV1 514 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 NBPF3Q9H094 633 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 IRF2BPLQ9H1B7 796 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 CD209Q9NNX6 404 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 PUF60Q9UHX1 559 aaKnown RBP5.91□□□□□ -1.46
USP28-213ENST00000544967 PASKQ96RG2 1323 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 SHTN1A0MZ66 631 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 INPP5BP32019 993 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 MYL5Q02045 173 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 IFFO1Q0D2I5 559 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 WASHC4Q2M389 1173 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 FKBP1CQ5VVH2 108 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 ZNF804AQ7Z570 1209 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 MAB21L3Q8N8X9 362 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 FAM204AQ9H8W3 233 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 ACTR5Q9H9F9 607 aaPredicted RBP5.91□□□□□ -1.46
USP28-213ENST00000544967 TOMM22Q9NS69 142 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 HOMER3Q9NSC5 361 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 POLR3EQ9NVU0 708 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 KLF15Q9UIH9 416 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 FAM169AQ9Y6X4 670 aa5.91□□□□□ -1.46
USP28-213ENST00000544967 GOLGA8KD6RF30 607 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 PFKFB2O60825 505 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 UFL1O94874 794 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 CCDC175P0C221 793 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 GNG11P61952 73 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 APBA1Q02410 837 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 ITIH3Q06033 890 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 TOB2Q14106 344 aaPredicted RBP5.9□□□□□ -1.46
USP28-213ENST00000544967 SART3Q15020 963 aaKnown RBP5.9□□□□□ -1.46
USP28-213ENST00000544967 RSBN1LQ6PCB5 846 aaPredicted RBP5.9□□□□□ -1.46
USP28-213ENST00000544967 APLFQ8IW19 511 aaPredicted RBP5.9□□□□□ -1.46
USP28-213ENST00000544967 KRI1Q8N9T8 703 aaKnown RBP5.9□□□□□ -1.46
USP28-213ENST00000544967 KAT2BQ92831 832 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 FAXDC2Q96IV6 333 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 BAG1Q99933 345 aaPredicted RBP5.9□□□□□ -1.46
USP28-213ENST00000544967 PRR12Q9ULL5 1215 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 TTF2Q9UNY4 1162 aaKnown RBP5.9□□□□□ -1.46
USP28-213ENST00000544967 HMGB1P1B2RPK0 211 aaPredicted RBP5.9□□□□□ -1.46
USP28-213ENST00000544967 STK25O00506 426 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 SLC27A2O14975 620 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 EIF3HO15372 352 aaKnown RBP eCLIP5.9□□□□□ -1.46
USP28-213ENST00000544967 TOP1P11387 765 aaKnown RBP5.9□□□□□ -1.46
USP28-213ENST00000544967 SLC5A1P13866 664 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 ATP5JP18859 108 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 RDXP35241 583 aaKnown RBP5.9□□□□□ -1.46
USP28-213ENST00000544967 TFCP2Q12800 502 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 GRIK3Q13003 919 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 TNIP1Q15025 636 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 AOC3Q16853 763 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 SH3GL2Q99962 352 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 GOLPH3LQ9H4A5 285 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 GPRC5DQ9NZD1 345 aa5.9□□□□□ -1.46
USP28-213ENST00000544967 DBNLQ9UJU6 430 aaKnown RBP5.9□□□□□ -1.46
USP28-213ENST00000544967 A0A1B0GUA9 196 aa5.9□□□□□ -1.47
USP28-213ENST00000544967 PES1O00541 588 aaKnown RBP5.9□□□□□ -1.47
USP28-213ENST00000544967 RNF40O75150 1001 aa5.9□□□□□ -1.47
USP28-213ENST00000544967 SYF2O95926 243 aaKnown RBP5.9□□□□□ -1.47
USP28-213ENST00000544967 UQCRFS1P1P0C7P4 283 aa5.9□□□□□ -1.47
USP28-213ENST00000544967 MAP3K10Q02779 954 aa5.9□□□□□ -1.47
USP28-213ENST00000544967 CXCL9Q07325 125 aa5.9□□□□□ -1.47
USP28-213ENST00000544967 EGFLAMQ63HQ2 1017 aa5.9□□□□□ -1.47
USP28-213ENST00000544967 USP50Q70EL3 339 aaPredicted RBP5.9□□□□□ -1.47
USP28-213ENST00000544967 METTL16Q86W50 562 aaKnown RBP5.9□□□□□ -1.47
USP28-213ENST00000544967 CERS5Q8N5B7 392 aa5.9□□□□□ -1.47
USP28-213ENST00000544967 ZBTB9Q96C00 473 aa5.9□□□□□ -1.47
USP28-213ENST00000544967 DHX58Q96C10 678 aa5.9□□□□□ -1.47
USP28-213ENST00000544967 HSD3B7Q9H2F3 369 aa5.9□□□□□ -1.47
USP28-213ENST00000544967 ATP6V0A4Q9HBG4 840 aa5.9□□□□□ -1.47
USP28-213ENST00000544967 ABCB6Q9NP58 842 aa5.9□□□□□ -1.47
USP28-213ENST00000544967 ZNF277Q9NRM2 450 aaPredicted RBP5.9□□□□□ -1.47
USP28-213ENST00000544967 RBM8AQ9Y5S9 174 aaKnown RBP5.9□□□□□ -1.47
USP28-213ENST00000544967 POLR2AP24928 1970 aaKnown RBP5.9□□□□□ -1.47
USP28-213ENST00000544967 ZMYM6O95789 1325 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 ITIH6Q6UXX5 1313 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 hCG_2014768A0A024R1R8 64 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 CTAGE15A4D2H0 777 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 USP17L3A6NCW0 530 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 USP17L4A6NCW7 530 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 WTIPA6NIX2 430 aaPredicted RBP5.89□□□□□ -1.47
USP28-213ENST00000544967 LIN7AO14910 233 aaPredicted RBP5.89□□□□□ -1.47
USP28-213ENST00000544967 NPHP1O15259 732 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 KIF5CO60282 957 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 RTN2O75298 545 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 PRR29P0C7W0 189 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 CTAGE8P0CG41 777 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 TNFRSF8P28908 595 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 GNL2Q13823 731 aaKnown RBP5.89□□□□□ -1.47
USP28-213ENST00000544967 ADCK5Q3MIX3 580 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 FOXR1Q6PIV2 292 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 HHIPL2Q6UWX4 724 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 USP17L1Q7RTZ2 530 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 CTAGE6Q86UF2 777 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 CTAGE4Q8IX94 777 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 NIM1KQ8IY84 436 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 FAM76AQ8TAV0 307 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 ITFG2Q969R8 447 aa5.89□□□□□ -1.47
USP28-213ENST00000544967 EAF2Q96CJ1 260 aaPredicted RBP5.89□□□□□ -1.47
USP28-213ENST00000544967 DACH1Q9UI36 760 aa5.89□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms