RNA–Protein interactions for RNA: ENST00000523088.5

HDAC3-216, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-216ENST00000523088 ATP2B4P23634 1241 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 GMPSP49915 693 aaPredicted RBP8.48□□□□□ -1.05
HDAC3-216ENST00000523088 G3BP1Q13283 466 aaKnown RBP eCLIP8.48□□□□□ -1.05
HDAC3-216ENST00000523088 FKBP5Q13451 457 aaPredicted RBP8.48□□□□□ -1.05
HDAC3-216ENST00000523088 SIM2Q14190 667 aaPredicted RBP8.48□□□□□ -1.05
HDAC3-216ENST00000523088 NEDD9Q14511 834 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 SART3Q15020 963 aaKnown RBP8.48□□□□□ -1.05
HDAC3-216ENST00000523088 TCEAL1Q15170 157 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 GNPTABQ3T906 1256 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 TEX35Q5T0J7 233 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 KANK3Q6NY19 840 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 ZCCHC8Q6NZY4 707 aaKnown RBP8.48□□□□□ -1.05
HDAC3-216ENST00000523088 SRLQ86TD4 932 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 LURAP1LQ8IV03 231 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 TEX9Q8N6V9 391 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 TSPYL6Q8N831 410 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 LINS1Q8NG48 757 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 TBC1D16Q8TBP0 767 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 WDR66Q8TBY9 1149 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 AIDAQ96BJ3 306 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 TBC1D31Q96DN5 1066 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 PLA2G12BQ9BX93 195 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 EPB41L4AQ9HCS5 686 aaPredicted RBP8.48□□□□□ -1.05
HDAC3-216ENST00000523088 KMT5AQ9NQR1 393 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 KRT82Q9NSB4 513 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 DDX56Q9NY93 547 aaKnown RBP8.48□□□□□ -1.05
HDAC3-216ENST00000523088 TTLL3Q9Y4R7 772 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 MED23Q9ULK4 1368 aa8.48□□□□□ -1.05
HDAC3-216ENST00000523088 GOLGA6L10A6NI86 522 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 A6NJY4 79 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 NEURL1BA8MQ27 555 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 CTIFO43310 598 aaKnown RBP8.47□□□□□ -1.05
HDAC3-216ENST00000523088 UFL1O94874 794 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 HSPA1AP0DMV8 641 aaKnown RBP8.47□□□□□ -1.05
HDAC3-216ENST00000523088 HSPA1BP0DMV9 641 aaKnown RBP8.47□□□□□ -1.05
HDAC3-216ENST00000523088 S100A5P33763 92 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 IGHMBP2P38935 993 aaKnown RBP8.47□□□□□ -1.05
HDAC3-216ENST00000523088 EPS15P42566 896 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 USP5P45974 858 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 TRAPPC10P48553 1259 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 CCT8P50990 548 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 MRPL12P52815 198 aaKnown RBP8.47□□□□□ -1.05
HDAC3-216ENST00000523088 HDAC4P56524 1084 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 UBXN2AP68543 259 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 GPSM2P81274 684 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 HTRA3P83110 453 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 PDE4DQ08499 809 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 ADCY1Q08828 1119 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 GPS2Q13227 327 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 PPP2R5BQ15173 497 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 SKOR2Q2VWA4 1001 aaPredicted RBP8.47□□□□□ -1.05
HDAC3-216ENST00000523088 MAP1SQ66K74 1059 aaPredicted RBP8.47□□□□□ -1.05
HDAC3-216ENST00000523088 NEK10Q6ZWH5 1172 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 BEND5Q7L4P6 421 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 TMEM110Q86TL2 294 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 DZIP1Q86YF9 867 aaKnown RBP8.47□□□□□ -1.05
HDAC3-216ENST00000523088 NPAS4Q8IUM7 802 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 SUN5Q8TC36 379 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 HELQQ8TDG4 1101 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 ANKRD49Q8WVL7 239 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 DTNBP1Q96EV8 351 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 HHIPL1Q96JK4 782 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 BRD8Q9H0E9 1235 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 TMX1Q9H3N1 280 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 CTNNA3Q9UI47 895 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 GTF3C4Q9UKN8 822 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 TPCN1Q9ULQ1 816 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 ABT1Q9ULW3 272 aaKnown RBP8.47□□□□□ -1.05
HDAC3-216ENST00000523088 RRP15Q9Y3B9 282 aaKnown RBP8.47□□□□□ -1.05
HDAC3-216ENST00000523088 SCN9AQ15858 1988 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 MYO3BQ8WXR4 1341 aa8.47□□□□□ -1.05
HDAC3-216ENST00000523088 POLR2AP24928 1970 aaKnown RBP8.46□□□□□ -1.05
HDAC3-216ENST00000523088 GOLGA8AA7E2F4 631 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 C19orf81C9J6K1 198 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 H0Y3Z8 333 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 FOXN3O00409 490 aaPredicted RBP8.46□□□□□ -1.06
HDAC3-216ENST00000523088 ERC2O15083 957 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 ECE2O60344 883 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 PRPF40AO75400 957 aaKnown RBP8.46□□□□□ -1.06
HDAC3-216ENST00000523088 RAD17O75943 681 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 SKIP12755 728 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 CD9P21926 228 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 ELF1P32519 619 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 ZBED6P86452 979 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 LMNB2Q03252 620 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 PABPC4Q13310 644 aaKnown RBP eCLIP8.46□□□□□ -1.06
HDAC3-216ENST00000523088 GCKRQ14397 625 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 RASA2Q15283 850 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 RCN1Q15293 331 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 DEFB115Q30KQ5 88 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 AKNAD1Q5T1N1 836 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 ARMC9Q7Z3E5 817 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 PODNQ7Z5L7 613 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 C10orf67Q8IYJ2 551 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 AGBL3Q8NEM8 1001 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 ACMSDQ8TDX5 336 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 SLC39A13Q96H72 371 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 IRX2Q9BZI1 471 aaPredicted RBP8.46□□□□□ -1.06
HDAC3-216ENST00000523088 ANKRD2Q9GZV1 360 aa8.46□□□□□ -1.06
HDAC3-216ENST00000523088 FAM107BQ9H098 131 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms